genome.fa.s3.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  110  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35336809--35336867	14	4.4	14	85	6	68	25	0	30	44	1.55
35339119--35339167	16	3.2	16	72	21	59	30	0	8	61	1.25
35339796--35339824	12	2.3	13	88	11	51	65	0	0	34	0.93
35339834--35339917	20	4.1	21	76	18	79	0	30	0	69	0.89
35339857--35339918	4	15.5	4	82	12	74	0	27	0	72	0.85
35339845--35339918	17	4.3	18	77	13	75	0	29	0	70	0.88
35339834--35339905	20	3.7	20	83	14	80	0	31	0	68	0.90
35339839--35339921	35	2.3	35	85	8	114	0	28	0	71	0.87
35341056--35341163	54	2.0	54	100	0	216	31	29	12	25	1.93
35341308--35341336	10	2.7	11	94	5	51	10	10	48	31	1.71
35341714--35341779	23	2.8	23	78	15	73	69	19	7	3	1.26
35341747--35341791	23	2.0	23	86	0	63	71	17	4	6	1.25
35341796--35341836	21	2.0	21	90	4	66	75	17	0	7	1.02
35341800--35341858	21	2.8	21	81	2	55	79	10	3	6	1.03
35343214--35343398	86	2.2	81	84	6	228	42	15	6	36	1.72
35343834--35343867	17	2.0	17	88	11	52	23	5	5	64	1.38
35343921--35344008	9	9.7	9	68	16	56	28	1	1	69	1.03
35343909--35343959	27	1.9	26	84	4	66	37	0	0	62	0.95
35343973--35344008	17	2.1	17	94	0	63	22	0	0	77	0.76
35344017--35344190	89	2.0	90	83	4	228	33	8	20	38	1.82
35346604--35346643	20	2.0	20	85	0	53	62	7	2	27	1.35
35351308--35351342	17	2.1	17	88	0	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35351340--35351398	30	2.0	29	83	9	75	45	3	0	50	1.18
35353513--35353547	5	7.0	5	93	0	61	37	0	62	0	0.95
35355852--35355901	25	2.2	24	82	13	61	34	0	4	62	1.14
35356433--35356627	103	1.9	104	94	1	347	40	2	23	33	1.66
35360224--35360396	87	2.0	87	86	0	238	31	15	32	21	1.94
35364228--35364288	30	2.0	30	96	0	113	49	8	24	18	1.74
35364789--35364877	24	3.7	24	79	5	99	29	16	22	31	1.96
35369211--35369246	10	3.6	10	88	11	56	30	38	0	30	1.58
35379069--35379105	14	2.6	14	91	0	56	59	27	0	13	1.35
35379069--35379112	14	3.1	14	83	6	54	56	29	0	13	1.38
35379103--35379153	20	2.5	20	87	6	66	45	25	1	27	1.64
35380701--35380905	109	1.9	108	86	4	297	54	15	12	17	1.71
35381223--35381268	22	2.1	22	83	0	56	21	19	6	52	1.69
35382445--35382483	15	2.7	15	88	4	53	48	25	2	23	1.63
35383984--35384254	109	2.5	106	86	6	361	57	12	12	17	1.66
35386758--35386789	16	2.0	16	100	0	64	18	18	25	37	1.94
35388722--35389021	52	5.8	52	88	2	460	27	14	22	35	1.93
35388722--35389021	103	2.9	104	88	3	478	27	14	22	35	1.93
35389002--35389040	19	2.1	19	100	0	78	25	15	20	38	1.92
35388950--35389089	71	2.0	71	89	0	217	27	13	21	37	1.91
35389021--35389238	52	4.2	52	86	1	294	25	14	22	37	1.92
35388898--35389144	123	2.0	123	93	0	422	27	14	21	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35388847--35389196	175	2.0	174	91	1	567	27	13	22	36	1.92
35393766--35394103	52	6.5	52	88	1	455	26	14	22	36	1.93
35393765--35394103	155	2.2	156	84	3	468	26	14	22	36	1.93
35395936--35395962	14	1.9	14	100	0	54	37	7	11	44	1.68
35401057--35401125	30	2.3	30	82	2	77	43	4	7	44	1.51
35425977--35426016	17	2.4	17	82	0	53	22	15	12	50	1.77
35431085--35431116	15	2.1	16	88	11	50	56	0	0	43	0.99
35438211--35438243	12	2.8	12	100	0	66	15	6	0	78	0.93
35445772--35445806	12	2.9	12	91	0	52	22	2	0	74	0.95
35450559--35450598	15	2.7	14	88	7	53	20	0	7	72	1.08
35456394--35456432	15	2.6	14	92	8	60	25	0	5	69	1.09
35470446--35470491	17	2.6	18	86	3	58	47	13	17	21	1.81
35479594--35479740	73	2.0	73	100	0	294	27	19	21	31	1.97
35505286--35505559	48	5.7	48	79	5	318	38	19	25	16	1.92
35505289--35505569	97	2.9	97	93	0	472	38	19	25	17	1.93
35505289--35505618	97	3.4	97	87	2	432	37	20	25	16	1.93
35506012--35506036	13	1.9	13	100	0	50	48	0	0	52	1.00
35509017--35509544	166	3.1	167	77	14	517	44	7	10	37	1.67
35509859--35509933	27	2.6	29	78	16	84	26	10	10	52	1.69
35509859--35510030	58	2.9	59	85	4	204	24	13	11	50	1.75
35510217--35510384	89	1.9	89	80	4	196	47	11	15	25	1.80
35510255--35510384	31	4.4	31	74	15	103	46	10	15	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35514032--35514079	12	3.9	12	83	2	60	2	20	0	77	0.88
35523029--35523072	22	2.0	23	90	4	72	45	9	13	31	1.75
35525245--35525324	35	2.3	35	86	0	106	35	22	10	32	1.87
35525328--35525385	19	3.2	19	90	4	84	24	31	17	27	1.97
35530186--35530232	20	2.3	21	85	3	60	42	2	17	38	1.61
35530206--35530327	48	2.5	48	92	2	192	36	5	21	36	1.77
35530082--35530280	69	2.9	68	82	2	281	37	5	18	38	1.73
35530137--35530347	117	1.8	117	87	2	316	37	4	18	38	1.72
35530206--35530325	23	5.0	25	68	20	94	35	5	20	37	1.77
35530303--35530347	10	4.5	10	86	5	56	33	2	22	42	1.66
35530263--35530392	68	1.9	67	85	4	181	33	5	20	40	1.76
35530137--35530390	116	2.2	117	83	2	305	36	5	18	38	1.75
35531111--35531293	23	8.0	23	90	2	289	33	4	13	48	1.62
35531111--35531293	91	2.0	91	90	3	287	33	4	13	48	1.62
35531286--35531333	10	4.7	10	89	2	69	35	4	20	39	1.72
35532983--35533023	21	2.0	21	100	0	82	24	21	14	39	1.91
35535132--35535270	21	6.1	21	71	20	84	46	19	21	12	1.83
35535153--35535232	25	3.4	25	73	19	98	43	18	26	11	1.84
35535132--35535269	46	2.9	46	94	3	231	45	19	21	13	1.84
35535234--35535294	23	2.7	23	89	0	86	44	22	18	14	1.86
35536970--35537172	58	3.5	58	86	2	282	36	7	19	35	1.80
35537078--35537115	10	3.7	10	89	3	58	36	2	21	39	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35537032--35537219	68	3.0	63	82	10	199	38	5	19	36	1.74
35537145--35537247	10	9.5	10	69	21	57	39	2	19	37	1.67
35537145--35537247	20	4.8	20	68	25	66	39	2	19	37	1.67
35536968--35537230	117	2.3	116	83	7	313	37	6	19	36	1.77
35537078--35537247	68	2.5	68	87	4	245	38	4	20	37	1.71
35538036--35538197	23	7.0	23	86	2	218	37	4	11	47	1.59
35538040--35538202	70	2.3	69	88	3	229	38	4	11	46	1.59
35538190--35538237	10	4.7	10	92	2	78	37	2	20	39	1.65
35539421--35539458	12	3.3	12	78	14	53	57	5	18	18	1.58
35539421--35539466	22	2.1	22	92	8	76	58	4	19	17	1.55
35542968--35543061	41	2.2	41	88	3	134	24	1	30	43	1.61
35546826--35546888	31	2.0	31	93	0	108	31	26	6	34	1.82
35547870--35547906	17	2.2	17	100	0	74	35	21	5	37	1.77
35557872--35557924	26	2.0	26	100	0	106	24	11	30	33	1.90
35563242--35563285	3	15.0	3	95	4	81	68	0	0	31	0.90
35567101--35567148	21	2.3	21	85	0	60	33	27	12	27	1.92
35568311--35568363	21	2.7	20	74	8	54	5	24	1	67	1.22
35569790--35569865	39	1.9	39	83	0	98	15	22	21	40	1.90
35570197--35570222	2	13.0	2	100	0	52	0	0	50	50	1.00
35571089--35571369	52	5.4	52	82	2	359	35	22	14	27	1.93
35571086--35571370	103	2.7	103	89	2	419	36	22	14	27	1.92
35575537--35575585	21	2.3	21	82	0	53	32	26	12	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35575688--35575766	6	13.5	6	70	15	58	44	0	5	50	1.24
35575691--35575731	17	2.4	17	87	0	64	41	0	2	56	1.13
35575688--35575776	17	5.5	17	72	11	62	44	0	4	50	1.22
35577624--35577850	29	7.8	28	71	16	115	33	24	1	40	1.66
35577601--35577905	58	5.2	58	81	7	307	34	24	1	39	1.67
35577771--35577865	29	3.3	29	74	12	106	38	25	1	34	1.63
35588879--35589117	52	4.6	52	90	0	343	35	25	13	25	1.92
35591111--35591154	23	1.9	23	90	0	70	61	4	2	31	1.28
35591115--35591157	11	3.8	11	80	17	52	65	2	2	30	1.18
35591112--35591189	27	2.9	27	75	16	74	58	5	1	34	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171