genome.fa.s3.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  166  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49149726--49149752	6	4.5	6	100	0	54	14	0	0	85	0.61
49160399--49160457	31	1.9	30	83	10	75	52	10	8	28	1.64
49162407--49162437	15	2.0	16	93	6	55	51	0	0	48	1.00
49162501--49162586	39	2.2	40	85	8	115	53	6	2	37	1.41
49163198--49163236	15	2.6	15	84	12	53	69	0	2	28	1.02
49168230--49168710	209	2.3	210	81	3	540	30	13	22	33	1.92
49173633--49174130	210	2.4	210	85	1	658	30	13	22	33	1.92
49176680--49177142	210	2.2	210	84	2	581	31	13	21	33	1.92
49179396--49179892	210	2.4	209	83	3	597	29	14	22	33	1.93
49182524--49182933	210	2.0	210	83	1	527	30	14	21	32	1.94
49196409--49196530	61	2.0	61	85	1	163	27	4	18	50	1.64
49200812--49200881	12	5.8	12	72	11	54	37	18	17	27	1.93
49200808--49200876	23	2.9	24	79	10	88	39	18	15	26	1.91
49203800--49203858	31	1.9	30	86	3	82	52	11	8	27	1.66
49204186--49204241	22	2.7	21	80	5	69	39	0	0	60	0.97
49205071--49205095	8	3.1	8	100	0	50	88	0	0	12	0.53
49220576--49220661	43	2.0	43	95	0	154	34	12	3	48	1.58
49223579--49223620	15	2.7	16	82	13	52	35	0	0	64	0.94
49223580--49223611	17	1.9	17	93	6	57	40	0	0	59	0.97
49226635--49226726	41	2.2	41	90	0	139	52	9	1	36	1.42
49229278--49229670	197	2.0	197	94	0	687	35	11	11	41	1.78
49229625--49229785	81	2.0	82	92	1	270	43	3	17	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49233338--49233392	16	3.4	16	90	5	83	40	0	3	56	1.17
49233317--49233373	27	2.1	27	87	6	80	29	0	7	63	1.21
49233338--49233418	33	2.4	34	83	4	92	38	1	6	54	1.33
49235258--49235410	29	5.2	29	77	2	108	35	24	3	36	1.72
49235473--49235573	28	3.6	27	70	15	78	32	19	6	40	1.78
49240603--49240674	12	5.8	12	76	15	67	80	1	12	5	0.94
49240620--49240650	14	2.1	15	94	5	55	83	0	3	12	0.75
49240605--49240651	15	2.9	16	81	15	53	82	0	8	8	0.83
49241741--49241915	50	3.5	49	68	11	129	38	20	26	14	1.91
49241773--49242069	50	6.0	50	74	5	167	39	20	25	14	1.90
49241769--49241962	101	1.9	101	87	2	282	40	20	24	13	1.89
49241772--49242004	101	2.3	101	82	4	258	41	19	24	13	1.88
49241933--49242130	48	4.1	48	82	1	189	39	20	25	14	1.90
49241892--49242160	49	5.5	48	80	1	196	37	19	26	15	1.92
49242387--49242459	38	1.9	37	81	10	85	27	23	24	24	2.00
49242618--49243216	206	3.0	205	87	2	827	35	20	23	21	1.96
49243560--49243615	26	2.1	27	83	9	71	33	0	7	58	1.25
49243589--49243655	17	3.9	18	74	18	54	41	1	5	50	1.36
49243581--49243634	17	3.4	15	80	12	63	42	0	3	53	1.18
49245426--49245658	58	3.9	59	76	9	185	36	23	2	36	1.69
49250468--49250495	13	2.2	13	100	0	56	46	0	14	39	1.44
49253780--49253823	5	8.6	5	97	2	79	38	2	0	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49260614--49260681	33	2.1	33	97	0	127	42	20	1	35	1.61
49260983--49261034	24	2.2	23	80	10	61	25	1	5	67	1.23
49261549--49261638	9	10.3	9	69	20	50	31	1	2	65	1.12
49262289--49262363	31	2.4	31	77	4	80	29	10	16	44	1.81
49262484--49262554	31	2.3	31	90	0	115	26	9	19	43	1.82
49262222--49262602	187	2.0	187	91	0	609	35	14	16	33	1.89
49262732--49262839	31	3.6	30	76	9	121	45	18	14	21	1.85
49276670--49276701	16	1.9	17	93	6	57	62	3	0	34	1.11
49277139--49277209	32	2.3	31	80	7	81	46	4	1	47	1.30
49279789--49279828	21	1.9	21	100	0	80	37	15	7	40	1.75
49281991--49282054	18	3.4	19	78	8	76	28	1	0	70	0.97
49282130--49282240	54	2.1	54	98	0	213	52	5	6	36	1.50
49283239--49283303	22	2.8	23	74	9	60	36	3	3	56	1.30
49284857--49284902	24	1.9	24	86	0	65	60	6	0	32	1.22
49285199--49285247	21	2.6	18	81	15	55	42	0	0	57	0.99
49292704--49292772	14	4.9	14	78	0	75	52	24	1	21	1.55
49296816--49297020	43	4.8	43	82	2	241	32	26	19	22	1.97
49296818--49297045	43	5.3	42	80	4	240	31	27	18	22	1.97
49297354--49297393	21	1.9	21	84	0	53	0	42	15	42	1.46
49301137--49301272	3	49.7	3	69	17	50	71	3	2	22	1.15
49301217--49301282	5	12.4	5	76	17	62	78	1	1	18	0.90
49301217--49301273	22	2.5	22	91	2	96	78	0	1	19	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49301224--49301273	17	2.9	17	88	5	75	80	0	2	18	0.82
49301217--49301287	9	7.9	9	75	21	60	78	1	2	16	0.94
49301767--49302115	118	3.0	118	81	6	325	21	26	21	30	1.98
49304044--49304204	23	6.9	23	83	5	164	10	24	23	41	1.86
49312740--49312919	20	8.9	20	72	7	141	16	33	17	32	1.93
49312739--49312919	40	4.5	40	84	4	240	16	33	18	32	1.93
49313708--49314329	319	1.9	320	92	0	1039	24	19	25	31	1.98
49321821--49321850	14	2.1	15	93	6	53	43	0	0	56	0.99
49322065--49322128	29	2.2	30	83	8	78	46	3	1	48	1.27
49328097--49328138	10	4.4	10	83	16	54	26	0	2	71	0.98
49329531--49329626	48	2.0	48	97	0	183	27	26	16	30	1.97
49334838--49334901	29	2.2	27	76	15	65	28	10	6	54	1.59
49336200--49337181	329	3.0	329	100	0	1964	25	25	14	33	1.94
49341732--49341782	2	25.5	2	91	0	84	45	0	0	54	0.99
49342325--49342406	14	6.5	13	67	23	50	32	2	1	63	1.15
49344647--49344690	22	2.0	22	95	0	79	38	4	11	45	1.61
49347714--49347906	55	3.5	53	77	14	192	32	13	15	38	1.86
49347681--49347906	114	2.0	114	85	5	305	30	15	16	37	1.90
49347927--49348098	55	3.1	54	78	14	154	28	15	18	37	1.91
49347966--49348098	60	2.3	58	82	10	157	27	18	18	36	1.94
49348937--49348982	18	2.6	18	89	0	74	60	2	4	32	1.28
49348955--49349040	30	2.9	30	89	0	136	63	5	3	26	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49352581--49352617	3	12.3	3	100	0	74	35	32	0	32	1.58
49354040--49354673	59	11.0	58	75	13	446	38	14	14	31	1.87
49354040--49354586	119	4.7	118	78	10	460	40	14	13	31	1.85
49354141--49354586	60	7.6	57	73	15	301	40	14	13	31	1.85
49354564--49354681	53	2.2	54	84	3	157	32	14	16	37	1.88
49356494--49356608	61	1.9	61	87	0	167	41	12	2	43	1.56
49362949--49362986	20	1.9	20	100	0	76	57	31	0	10	1.32
49363611--49363644	2	17.0	2	100	0	68	50	0	0	50	1.00
49366144--49366290	24	6.1	24	88	0	204	31	23	18	27	1.97
49368132--49368175	14	2.8	16	80	16	56	47	0	0	52	1.00
49385754--49385783	11	2.8	11	95	5	53	60	13	0	26	1.34
49388426--49388552	51	2.5	51	82	3	150	46	7	29	16	1.75
49390921--49390980	31	1.9	31	90	6	95	35	13	11	40	1.81
49402601--49402675	31	2.4	31	84	0	87	22	14	18	44	1.86
49406739--49406773	16	2.1	18	84	15	56	51	5	2	40	1.40
49410570--49410730	88	1.8	88	95	0	295	24	12	20	42	1.87
49410576--49410775	88	2.3	88	85	1	258	26	14	18	41	1.88
49413864--49413954	45	2.0	45	84	0	119	24	25	12	38	1.90
49418294--49418386	45	2.1	45	89	4	143	22	23	11	41	1.87
49422334--49422448	48	2.4	48	94	0	194	41	19	13	25	1.88
49423234--49423273	19	2.1	19	85	0	53	50	0	7	42	1.30
49423600--49423663	29	2.2	30	85	2	85	32	9	12	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49423849--49423907	31	2.0	29	86	6	82	40	15	10	33	1.81
49423844--49423910	31	2.3	27	80	14	80	38	13	10	37	1.79
49424389--49424428	19	2.1	19	90	0	62	47	0	10	42	1.37
49426011--49426143	45	3.0	45	85	1	178	19	23	15	41	1.90
49427601--49427674	37	2.0	37	89	0	112	29	21	12	36	1.90
49432271--49432310	19	2.1	19	85	0	53	50	0	7	42	1.30
49432507--49432540	17	2.0	17	100	0	68	64	5	0	29	1.17
49432670--49432728	31	2.0	31	83	6	77	37	3	6	52	1.45
49433886--49433974	45	2.0	45	90	0	142	17	23	16	41	1.90
49437981--49438070	45	2.0	45	88	0	135	21	23	14	41	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171