genome.fa.s3.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  91  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29685265--29686025	338	2.2	328	87	5	876	33	18	20	27	1.96
29686438--29686492	23	2.4	22	82	8	65	43	3	1	50	1.30
29686421--29686493	6	12.7	6	72	18	57	42	4	1	52	1.29
29686441--29686508	17	3.9	17	80	16	61	44	2	1	51	1.25
29686421--29686493	11	6.3	12	74	16	57	42	4	1	52	1.29
29686418--29686494	12	6.8	11	76	10	75	44	3	1	50	1.28
29686585--29686628	14	3.3	14	84	12	65	38	27	15	18	1.91
29688338--29688580	30	8.1	30	89	0	360	39	24	1	33	1.65
29688593--29688688	30	3.2	30	72	7	97	33	29	3	34	1.73
29688597--29688689	29	3.2	29	71	7	89	34	27	3	34	1.73
29692122--29692167	24	1.9	24	91	8	76	39	0	6	54	1.26
29697341--29697377	16	2.3	17	81	13	51	62	0	0	37	0.96
29699392--29699490	21	4.5	21	72	22	69	67	17	4	11	1.36
29699436--29699508	12	6.4	12	75	9	64	71	15	2	10	1.25
29699392--29699508	44	2.6	44	87	5	155	69	15	3	11	1.32
29699469--29699538	12	5.9	12	74	14	56	62	14	8	14	1.53
29699544--29699617	22	3.5	22	76	8	75	68	16	4	10	1.33
29702446--29702489	22	2.0	22	86	0	61	50	0	4	45	1.22
29702476--29702511	18	2.1	17	89	5	54	61	2	5	30	1.33
29704046--29704113	2	34.0	2	100	0	136	50	0	0	50	1.00
29705670--29705717	15	2.9	15	77	17	51	54	2	0	43	1.12
29707500--29707544	23	1.9	24	82	13	58	40	15	4	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29719246--29719294	21	2.3	21	82	10	55	0	24	10	65	1.23
29727340--29727377	2	19.0	2	100	0	76	50	0	0	50	1.00
29727849--29727894	2	23.0	2	100	0	92	50	0	0	50	1.00
29732925--29732967	20	2.3	18	84	8	50	53	2	2	41	1.26
29733016--29733041	2	13.0	2	100	0	52	50	0	0	50	1.00
29734516--29734596	23	3.5	22	86	6	108	48	3	2	45	1.33
29734623--29734679	15	4.1	14	80	17	57	29	8	0	61	1.26
29734633--29734680	18	2.6	18	83	6	60	29	8	0	62	1.24
29739473--29739506	15	2.4	14	85	9	50	50	8	23	17	1.74
29745239--29745278	5	8.6	5	83	10	50	0	15	0	85	0.61
29756189--29756236	20	2.4	20	82	6	53	16	25	4	54	1.60
29770816--29770856	11	3.8	11	75	18	50	80	0	17	2	0.82
29777075--29777110	18	2.1	17	89	5	54	0	27	0	72	0.85
29777075--29777113	15	2.6	16	84	12	55	0	25	0	74	0.82
29780781--29780827	24	2.0	24	84	12	62	51	8	12	27	1.69
29782986--29783028	17	2.5	17	88	0	59	55	16	11	16	1.68
29787719--29787793	27	2.7	27	87	2	105	25	18	24	32	1.97
29787775--29787833	24	2.5	24	88	0	100	22	22	25	30	1.99
29791673--29791701	8	3.6	8	100	0	58	0	24	0	75	0.80
29792401--29792470	27	2.6	27	86	2	95	24	17	20	38	1.93
29792459--29792511	24	2.2	24	89	0	88	26	22	22	28	1.99
29808400--29808446	25	2.0	23	87	8	67	63	4	2	29	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29811055--29811114	17	3.4	18	84	8	63	16	21	30	31	1.96
29813183--29813208	2	13.0	2	100	0	52	50	0	0	50	1.00
29818685--29818723	17	2.3	17	90	0	69	74	2	10	12	1.17
29820211--29820254	5	8.8	5	85	9	54	20	4	2	72	1.13
29821494--29821519	12	2.2	12	100	0	52	7	0	15	76	0.99
29822056--29822100	21	2.1	21	83	0	54	28	24	17	28	1.97
29832958--29833014	28	2.0	27	80	12	62	14	8	8	68	1.39
29838870--29838927	7	8.0	7	84	7	53	62	0	0	37	0.96
29838870--29838935	14	4.6	14	83	10	80	60	1	0	37	1.06
29838870--29838935	21	3.0	21	85	10	80	60	1	0	37	1.06
29838858--29838935	37	2.1	37	83	9	97	62	1	0	35	1.03
29863751--29863839	44	2.0	44	100	0	178	44	22	2	30	1.65
29866902--29866969	10	6.8	10	81	0	73	30	2	20	45	1.66
29866902--29866978	20	3.8	20	77	1	73	31	3	20	44	1.70
29869592--29869702	37	3.0	37	84	2	125	33	33	19	13	1.91
29878475--29878571	25	3.8	25	73	4	88	34	24	18	22	1.96
29878594--29878775	28	6.5	28	75	1	141	30	32	13	23	1.92
29878642--29878777	56	2.4	56	85	0	164	30	35	11	22	1.90
29879194--29879233	15	2.6	15	88	4	62	27	20	0	52	1.46
29879725--29879896	84	2.0	84	96	0	317	51	19	4	25	1.64
29883247--29883289	21	2.2	20	87	8	61	74	0	0	25	0.82
29883247--29883295	21	2.3	20	80	13	53	75	0	2	22	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29885455--29885498	22	2.0	22	100	0	88	40	4	31	22	1.74
29900731--29900764	17	1.9	18	88	5	52	32	0	32	35	1.58
29904783--29905207	68	6.2	68	77	8	376	34	20	21	24	1.97
29904972--29905123	76	2.0	76	89	0	232	33	23	19	23	1.97
29904905--29905165	144	1.8	144	88	0	405	33	18	22	25	1.97
29911041--29911153	57	2.0	57	87	3	165	28	19	19	32	1.96
29914417--29914446	15	2.0	15	93	0	51	13	0	23	63	1.29
29915789--29915838	23	2.1	25	81	7	59	36	12	8	44	1.71
29917591--29917624	16	2.1	16	89	10	52	67	5	2	23	1.26
29918190--29918247	27	2.2	26	81	9	64	34	1	1	62	1.16
29921813--29921877	27	2.4	27	94	2	114	47	9	1	41	1.45
29922322--29922350	2	14.5	2	100	0	58	51	0	0	48	1.00
29923000--29923145	30	4.9	30	84	3	179	34	23	1	40	1.64
29923003--29923143	61	2.4	60	83	7	180	35	22	1	40	1.63
29923100--29923203	29	3.6	28	77	5	100	34	25	4	35	1.77
29923100--29923223	28	4.3	28	80	11	117	35	27	5	31	1.80
29931902--29932156	49	5.2	49	72	11	152	36	18	27	17	1.93
29932308--29932744	235	1.9	233	81	3	529	27	29	17	26	1.98
29932308--29932802	235	2.1	233	79	3	521	26	29	18	25	1.98
29933318--29933855	78	6.9	78	80	2	517	25	28	19	26	1.98
29933280--29933775	233	2.1	234	82	2	606	25	29	18	25	1.98
29932341--29933775	39	36.8	39	68	8	537	26	29	17	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29933280--29933855	233	2.5	234	80	2	557	25	29	18	26	1.98
29935820--29935966	30	4.9	30	79	4	152	36	21	1	40	1.62
29935866--29935966	29	3.3	30	83	5	123	39	19	0	39	1.59
29935820--29935966	60	2.4	61	84	4	174	36	21	1	40	1.62
29938610--29938654	12	3.8	12	78	0	54	24	17	17	40	1.91
29938760--29938858	23	4.3	23	81	3	92	30	11	18	40	1.85
29938824--29938869	23	2.0	23	83	8	58	39	10	17	32	1.84
29946533--29947012	69	7.0	69	76	5	369	30	26	15	27	1.96
29946594--29946980	207	1.9	207	79	2	445	31	25	15	27	1.96
29955308--29955366	29	2.0	29	84	12	77	40	22	3	33	1.70
29955516--29955559	19	2.3	19	84	0	52	45	2	6	45	1.42
29955680--29955744	3	21.7	3	100	0	130	32	0	0	67	0.91
29956440--29956504	16	3.8	16	73	25	60	12	18	30	38	1.88
29956456--29956525	21	3.6	21	69	25	71	14	18	28	38	1.90
29956438--29956545	37	2.9	37	92	0	180	15	18	27	37	1.91
29957711--29957859	29	5.1	29	70	18	112	34	3	30	32	1.74
29957667--29957955	58	5.0	57	82	5	285	34	4	29	31	1.77
29957731--29957948	28	7.5	30	66	20	106	36	3	27	32	1.73
29957711--29957956	117	2.1	116	83	5	300	34	3	28	33	1.74
29957964--29958036	30	2.4	30	93	4	121	42	2	15	39	1.61
29957784--29958012	117	2.0	117	79	5	248	39	2	23	34	1.69
29958522--29958569	23	2.0	24	92	4	80	8	43	0	47	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29959908--29959948	17	2.4	17	91	0	64	53	4	0	41	1.22
29959903--29959948	6	8.0	6	78	9	51	50	4	0	45	1.21
29960212--29960480	92	2.9	92	92	2	425	32	20	14	32	1.93
29968875--29969046	81	2.1	81	84	4	222	41	12	4	41	1.61
29969138--29969213	38	1.9	38	84	10	100	57	7	1	32	1.36
29971408--29971451	16	2.9	15	80	6	52	68	0	4	27	1.09
29972650--29972688	18	2.2	18	90	0	60	69	5	2	23	1.21
29975232--29975298	23	2.9	23	100	0	134	41	4	0	53	1.21
29978825--29978878	4	13.8	4	79	11	58	74	0	24	1	0.92
29979072--29979096	12	2.1	12	100	0	50	48	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171