genome.fa.s3.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  164  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48653797--48654445	321	2.0	322	87	4	943	36	13	14	34	1.87
48655251--48655285	16	2.2	16	89	0	52	42	0	0	57	0.99
48656231--48656424	96	2.0	96	100	0	388	32	8	19	39	1.81
48657091--48657229	69	2.0	69	100	0	278	36	18	7	37	1.79
48657801--48657881	43	1.9	42	89	2	126	38	20	7	33	1.81
48659377--48659450	28	2.6	28	82	2	94	29	25	22	21	1.99
48660239--48660426	95	2.0	92	90	5	297	31	10	17	40	1.83
48660332--48660484	83	1.8	83	94	0	270	30	11	19	38	1.87
48661721--48661763	21	2.0	21	100	0	86	13	23	18	44	1.86
48665134--48665180	23	2.1	21	84	7	58	29	0	2	68	1.02
48666969--48667023	21	2.5	23	73	5	60	43	0	0	56	0.99
48669390--48669639	84	3.0	79	79	12	272	30	11	11	46	1.75
48669390--48669694	82	3.7	82	79	8	307	29	11	11	46	1.76
48669390--48669694	81	3.7	83	78	10	286	29	11	11	46	1.76
48669826--48669850	11	2.3	11	100	0	50	24	0	8	68	1.16
48676393--48676417	11	2.3	11	100	0	50	48	0	32	20	1.50
48687081--48687664	301	1.9	300	94	1	1017	34	16	17	31	1.92
48689405--48689455	21	2.4	21	76	0	57	43	21	35	0	1.53
48689757--48690179	43	10.1	43	77	7	366	30	17	25	27	1.97
48690622--48690998	41	9.2	41	75	7	302	35	19	27	17	1.95
48690622--48690998	82	4.6	82	81	3	368	35	19	27	17	1.95
48690622--48690975	123	2.9	121	81	4	390	34	19	27	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48695263--48695313	19	2.7	20	79	11	54	70	5	0	23	1.09
48696905--48697132	43	5.3	43	86	3	325	25	17	26	30	1.97
48703800--48703895	11	8.8	11	70	14	65	43	2	1	53	1.19
48703799--48703904	17	6.5	17	75	14	80	42	1	1	53	1.22
48703797--48703875	29	2.8	28	80	17	99	43	1	1	54	1.16
48703799--48703904	6	18.3	6	70	18	82	42	1	1	53	1.22
48703841--48703895	24	2.3	24	93	3	94	45	1	0	52	1.11
48703811--48703904	35	2.7	35	75	15	88	42	2	2	53	1.25
48703982--48704012	15	2.1	15	100	0	62	45	19	6	29	1.75
48704675--48704734	24	2.6	22	84	7	66	51	1	6	40	1.38
48705858--48706256	29	13.7	29	74	10	278	36	23	4	35	1.75
48705858--48706316	59	7.8	59	76	8	325	36	22	5	35	1.76
48712039--48712122	12	6.8	12	75	16	66	16	14	40	28	1.88
48712912--48713080	48	3.6	47	74	16	159	14	26	21	36	1.93
48722001--48722043	23	1.9	22	85	4	59	39	0	9	51	1.34
48724018--48724191	30	5.7	29	73	11	120	36	26	3	33	1.73
48724018--48724196	60	3.0	59	77	8	157	36	27	3	32	1.74
48724022--48724220	90	2.2	89	78	12	203	35	27	4	33	1.76
48724292--48724354	28	2.2	28	88	0	99	34	28	9	26	1.88
48729278--48729320	18	2.4	19	76	11	54	34	0	0	65	0.93
48729923--48729966	19	2.2	20	84	4	63	47	0	0	52	1.00
48730907--48731088	96	1.9	96	80	6	217	37	14	18	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48731300--48731400	31	3.4	29	71	14	80	38	1	24	34	1.67
48731296--48731381	28	2.9	30	75	15	81	37	0	25	37	1.56
48731296--48731629	59	5.6	57	72	13	198	37	2	23	35	1.70
48731468--48731650	30	6.1	29	82	6	179	36	2	21	40	1.65
48731483--48731631	30	5.0	30	85	4	203	38	0	19	41	1.56
48733491--48733550	17	3.3	16	75	24	57	53	1	0	45	1.10
48733503--48733550	11	4.4	11	84	7	62	54	0	0	45	0.99
48733506--48733548	21	2.0	21	95	0	77	51	0	0	48	1.00
48739798--48739841	17	2.7	16	82	6	52	52	0	2	45	1.13
48740796--48740837	22	2.0	21	85	4	57	33	9	23	33	1.87
48744499--48744545	22	2.2	21	81	11	51	63	2	0	34	1.06
48754425--48754466	13	3.3	13	83	6	50	69	2	2	26	1.13
48755187--48755215	10	2.9	10	100	0	58	62	0	6	31	1.22
48757484--48757523	21	1.9	21	84	0	53	25	17	20	37	1.94
48758620--48758730	56	2.0	56	83	0	141	27	30	22	19	1.98
48762615--48762659	23	1.9	24	86	13	67	6	46	0	46	1.29
48763425--48763453	6	5.0	6	91	8	51	82	0	0	17	0.66
48763426--48763451	11	2.4	11	100	0	52	84	0	0	15	0.62
48770232--48770282	22	2.3	22	82	0	66	43	23	7	25	1.81
48771763--48771816	24	2.2	24	86	0	72	38	24	16	20	1.92
48771783--48771829	24	2.0	24	91	0	76	36	23	19	21	1.95
48772652--48772690	19	2.1	19	85	9	53	38	17	7	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48774176--48774209	14	2.5	13	90	4	50	44	0	17	38	1.49
48774469--48774544	23	3.4	23	62	10	59	48	5	10	35	1.60
48774459--48774549	43	2.1	43	97	2	175	49	7	8	34	1.62
48776488--48776522	12	2.9	12	86	0	52	40	0	2	57	1.14
48776494--48776540	18	2.7	18	86	3	60	42	2	2	53	1.25
48776500--48776540	17	2.3	18	87	4	57	43	2	0	53	1.13
48776625--48776671	24	2.0	23	95	4	85	42	42	4	10	1.59
48777641--48777693	23	2.3	23	87	6	72	64	1	1	32	1.15
48778343--48778380	17	2.2	17	95	0	67	39	2	0	57	1.12
48780265--48780800	59	9.1	59	88	1	772	33	29	2	34	1.73
48780764--48780838	38	2.0	38	91	0	123	32	26	5	36	1.79
48790742--48790825	42	2.0	42	90	4	134	29	0	22	47	1.52
48792766--48792810	3	15.0	3	95	0	81	64	2	33	0	1.06
48795289--48795408	48	2.5	49	80	4	136	32	17	27	22	1.96
48795165--48795705	172	3.1	172	91	0	868	36	20	21	21	1.95
48796281--48796359	17	4.6	17	80	3	86	43	3	2	50	1.33
48796295--48796359	6	11.2	6	73	6	62	43	3	1	52	1.26
48820078--48820123	24	1.9	24	90	0	74	21	15	17	45	1.85
48822877--48823188	146	2.1	145	81	6	364	36	8	23	32	1.84
48823205--48823404	59	3.4	59	84	2	240	32	4	29	34	1.76
48823201--48823404	30	6.9	30	73	7	157	31	4	29	34	1.77
48824529--48824581	3	17.0	3	76	7	52	35	0	5	58	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48824529--48824589	22	2.8	22	85	5	79	37	0	4	57	1.20
48825300--48825386	17	5.1	17	79	9	88	55	4	2	37	1.33
48825684--48825794	39	2.8	39	72	8	100	21	16	35	27	1.94
48825976--48826035	30	2.0	30	90	0	93	41	6	23	28	1.79
48826006--48828830	92	30.7	92	94	0	4807	33	19	15	32	1.92
48828628--48828774	41	3.3	41	71	22	136	36	21	12	29	1.90
48828761--48828975	52	4.3	52	75	16	222	31	17	16	34	1.92
48828669--48828975	144	2.1	144	95	0	551	32	17	16	33	1.93
48828813--48828985	92	1.9	92	92	0	292	33	16	16	33	1.91
48830313--48830364	27	1.9	27	88	7	79	3	17	0	78	0.89
48835923--48836116	28	6.8	28	65	18	85	35	6	24	34	1.82
48836056--48836116	28	2.2	28	88	5	88	27	6	24	40	1.80
48836097--48836237	58	2.4	59	77	3	142	40	7	24	28	1.81
48835913--48836267	145	2.4	145	82	4	412	36	7	23	31	1.83
48836248--48836444	29	6.8	29	81	5	202	36	5	24	34	1.79
48836237--48836532	58	5.1	59	77	10	243	34	5	25	34	1.80
48836248--48836536	115	2.5	113	82	7	339	35	5	25	33	1.78
48838309--48838333	13	1.9	13	100	0	50	36	8	24	32	1.84
48838371--48838441	17	4.2	17	78	3	72	50	7	1	40	1.38
48838371--48838441	34	2.1	34	84	5	90	50	7	1	40	1.38
48838382--48838448	17	3.9	16	73	22	57	52	5	2	38	1.41
48841980--48842007	4	7.0	4	100	0	56	50	25	0	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48843423--48843530	27	3.9	27	70	15	62	39	14	12	32	1.85
48843932--48844022	28	3.3	28	71	19	84	39	15	15	29	1.88
48845441--48845560	53	2.2	53	86	1	159	27	17	15	39	1.90
48846251--48846289	18	2.2	18	95	0	69	23	17	10	48	1.78
48846460--48846502	19	2.3	19	88	8	61	69	4	0	25	1.07
48849043--48849141	51	1.9	51	83	4	128	40	6	18	35	1.75
48854483--48854613	53	2.5	53	84	1	163	29	14	15	40	1.87
48858559--48858589	9	3.3	9	91	8	53	41	0	0	58	0.98
48880227--48880260	16	2.1	16	88	0	50	55	0	0	44	0.99
48881950--48882057	6	18.0	6	74	17	82	48	0	1	49	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171