genome.fa.s3.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  142  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43459966--43460055	24	3.7	24	78	11	110	40	1	0	58	1.05
43459969--43460064	50	1.9	50	95	0	174	42	1	0	56	1.06
43459969--43460065	24	3.9	25	76	14	94	42	1	0	56	1.06
43459969--43460078	50	2.2	50	90	3	168	41	2	0	55	1.14
43460130--43460181	25	2.0	26	96	3	97	15	9	11	63	1.52
43460268--43460321	16	3.4	16	77	10	65	29	22	3	44	1.70
43460278--43460330	16	3.3	16	81	5	63	28	26	1	43	1.65
43460268--43460339	32	2.2	32	85	4	92	29	23	4	43	1.72
43463658--43463949	138	2.1	138	88	3	428	49	15	16	18	1.80
43463671--43464035	138	2.7	135	81	5	414	49	15	15	19	1.80
43464244--43464271	14	2.0	14	100	0	56	42	0	0	57	0.99
43464384--43464421	20	1.9	20	89	10	60	57	13	10	18	1.63
43465865--43466182	29	11.0	28	70	16	145	32	5	28	33	1.81
43465865--43466087	58	3.8	58	74	10	211	31	6	28	33	1.83
43465865--43466138	87	3.1	86	72	12	200	32	6	28	32	1.83
43466103--43466218	58	2.0	58	81	6	137	36	1	25	36	1.67
43466133--43466218	30	3.0	28	80	9	93	36	0	27	36	1.58
43465930--43466217	29	9.9	29	71	13	116	34	4	27	34	1.76
43468092--43469388	39	33.3	39	76	8	870	23	19	31	24	1.98
43468055--43469349	117	11.1	117	78	7	1126	23	19	31	24	1.98
43469689--43470227	50	10.9	50	76	5	425	18	32	16	32	1.93
43469689--43470173	197	2.5	197	82	6	556	18	32	16	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43469816--43470237	99	4.3	97	74	11	322	19	32	14	32	1.93
43469802--43470237	197	2.2	196	81	6	488	19	32	15	32	1.93
43471198--43471261	24	2.7	22	79	13	74	3	18	0	78	0.89
43471198--43471248	4	13.0	4	76	19	54	0	21	0	78	0.75
43471193--43471251	20	3.0	20	85	9	77	0	20	0	79	0.73
43471194--43471244	15	3.5	15	82	15	63	0	21	0	78	0.75
43477046--43477102	29	2.0	28	86	3	78	40	7	17	35	1.77
43477110--43477171	29	2.1	29	81	0	70	32	6	30	30	1.83
43480623--43480681	27	2.1	28	84	9	77	62	3	13	20	1.45
43482920--43483270	49	7.2	49	71	11	256	19	23	17	38	1.93
43482925--43483289	97	3.8	97	85	3	459	19	23	17	38	1.93
43482929--43483289	194	1.9	195	87	4	541	19	23	18	38	1.93
43495795--43495853	26	2.2	27	85	8	77	37	16	0	45	1.48
43495795--43495853	27	2.2	26	84	3	73	37	16	0	45	1.48
43498888--43499156	29	9.2	29	71	15	130	35	3	23	37	1.73
43498910--43499149	117	2.1	117	80	6	263	35	4	24	35	1.75
43498921--43499235	58	5.4	59	73	10	211	35	3	24	36	1.72
43498940--43499333	88	4.5	86	74	14	288	35	4	24	36	1.75
43499027--43499332	29	10.4	29	72	12	189	36	4	23	34	1.77
43498921--43499312	59	6.7	60	73	11	253	35	4	24	35	1.75
43498934--43499341	29	13.9	30	71	16	173	35	4	24	35	1.76
43501038--43501138	30	3.3	30	86	4	132	33	2	29	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43503100--43503138	17	2.4	17	82	4	53	66	5	2	25	1.25
43503567--43503607	18	2.3	18	91	4	66	36	2	0	60	1.10
43503575--43503615	18	2.3	18	86	0	55	36	2	0	60	1.10
43503930--43504010	2	40.5	2	100	0	162	50	0	0	49	1.00
43504771--43504829	29	2.0	31	83	6	77	33	11	11	42	1.78
43504806--43504864	31	1.9	31	89	0	91	35	5	10	49	1.59
43507727--43507770	18	2.3	19	84	7	54	59	2	9	29	1.41
43512315--43512460	48	3.1	49	76	18	157	10	24	22	41	1.86
43512315--43512460	71	2.1	71	94	2	258	10	24	22	41	1.86
43512315--43512460	23	6.2	23	79	13	138	10	24	22	41	1.86
43512425--43512538	39	2.9	39	94	0	192	12	21	20	45	1.83
43512464--43512544	23	3.8	23	70	21	86	11	20	18	49	1.78
43518504--43518649	48	3.1	47	81	13	167	10	25	22	41	1.86
43518504--43518649	71	2.1	71	96	2	267	10	25	22	41	1.86
43518504--43518649	23	6.2	23	81	13	147	10	25	22	41	1.86
43518614--43518727	39	2.9	39	94	0	192	13	21	20	44	1.85
43518653--43518733	23	3.8	23	70	21	86	11	20	19	48	1.79
43523060--43523156	40	2.4	41	81	8	119	36	21	18	23	1.95
43523242--43523300	29	2.0	29	90	6	93	20	18	18	42	1.90
43523319--43523381	23	2.7	22	75	18	65	28	15	14	41	1.87
43524646--43524775	65	2.0	65	90	0	206	40	6	22	30	1.80
43525689--43525798	53	2.1	53	84	3	141	17	13	36	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43526239--43526337	40	2.5	40	80	3	101	36	16	18	29	1.92
43526401--43526460	29	2.1	29	83	0	75	21	20	16	41	1.90
43533797--43533829	2	16.5	2	100	0	66	51	0	0	48	1.00
43534291--43534334	21	2.1	21	86	0	61	75	4	0	20	0.98
43535186--43535256	29	2.4	29	85	2	97	33	0	1	64	1.02
43535202--43535257	17	3.5	17	65	25	50	28	0	1	69	0.98
43535191--43535258	15	4.5	17	66	26	55	33	0	1	64	1.02
43548081--43548119	20	2.0	20	84	0	51	33	20	7	38	1.81
43557480--43557532	22	2.3	23	83	3	72	37	18	24	18	1.94
43559030--43559172	29	4.9	28	73	19	98	39	1	26	32	1.65
43559031--43559283	59	4.3	58	80	6	233	38	2	26	32	1.69
43559035--43559201	30	5.6	30	74	14	123	40	2	25	31	1.68
43559092--43559201	30	3.7	30	82	12	138	41	2	22	32	1.68
43559027--43559283	118	2.2	118	83	4	322	38	2	26	31	1.71
43559052--43559283	30	7.9	29	67	15	77	39	2	26	31	1.70
43560307--43560391	3	28.0	3	80	7	82	38	2	0	58	1.11
43561199--43561251	6	8.8	6	85	6	72	47	3	1	47	1.31
43561209--43561281	11	6.4	11	79	7	65	54	4	2	38	1.34
43561199--43561276	35	2.2	35	84	6	95	52	3	2	41	1.33
43561775--43561976	48	4.2	48	87	0	287	9	27	24	38	1.87
43562596--43562661	34	2.0	34	84	3	89	1	18	6	74	1.10
43562617--43562660	14	3.1	14	84	12	54	0	18	4	77	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43567917--43568074	59	2.7	56	79	6	163	39	4	24	31	1.75
43569077--43569128	3	17.0	3	80	11	61	34	1	0	63	1.06
43569936--43570006	17	4.1	17	80	5	70	52	7	2	38	1.44
43580480--43580564	36	2.4	35	84	3	109	42	14	8	35	1.75
43580674--43580796	6	21.0	6	76	13	105	47	0	2	50	1.14
43580674--43580733	27	2.2	27	90	3	93	41	0	3	55	1.16
43580674--43580773	11	9.2	11	72	15	75	43	0	3	54	1.16
43580674--43580771	17	6.1	16	80	11	103	42	0	3	54	1.16
43580724--43580796	31	2.4	30	79	9	76	50	0	1	47	1.09
43580710--43580796	37	2.4	36	79	12	97	50	0	1	48	1.08
43581611--43581648	10	3.9	10	86	6	51	63	2	0	34	1.09
43581611--43581648	19	2.0	19	89	0	58	63	2	0	34	1.09
43581981--43582015	13	2.7	13	90	0	52	74	5	11	8	1.22
43582467--43582784	162	2.0	161	94	1	557	25	15	13	44	1.83
43582876--43582981	28	3.7	30	73	21	111	32	30	3	33	1.76
43582904--43583005	30	3.5	31	70	16	99	33	28	3	34	1.76
43582873--43583009	29	4.7	29	70	18	106	32	31	3	32	1.75
43582873--43583009	58	2.4	58	94	0	247	32	31	3	32	1.75
43595745--43595941	108	1.8	108	86	4	290	40	14	14	30	1.86
43600654--43600848	59	3.3	56	76	8	201	36	4	29	29	1.76
43600823--43601115	90	3.3	88	83	6	349	34	3	23	37	1.73
43600823--43601115	30	9.8	30	81	5	278	34	3	23	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43600823--43601120	60	5.0	60	80	6	320	34	4	23	37	1.74
43601214--43601521	162	1.9	162	85	4	433	43	12	18	25	1.85
43601189--43601535	162	2.1	162	82	5	425	43	12	18	26	1.84
43602331--43602360	14	2.1	14	93	0	51	23	3	0	73	0.98
43602405--43602443	21	1.9	21	89	5	62	30	0	5	64	1.15
43603183--43603266	6	13.8	6	75	12	73	50	1	1	47	1.16
43603208--43603266	31	1.9	31	92	0	100	55	1	1	40	1.20
43603215--43603268	11	5.1	11	74	17	51	57	1	1	38	1.20
43603733--43604314	38	16.6	36	65	27	210	29	19	16	34	1.94
43603768--43604381	68	8.9	68	91	3	958	29	20	16	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171