genome.fa.s3.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  98  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31858341--31858467	62	2.1	62	92	1	211	30	8	11	48	1.70
31861793--31861878	28	3.0	28	68	3	73	36	23	3	37	1.72
31861974--31862037	21	3.0	21	90	4	94	45	20	1	32	1.61
31862833--31862857	11	2.3	11	100	0	50	0	8	0	92	0.40
31865271--31865329	24	2.5	22	74	15	55	50	5	1	42	1.34
31867345--31867401	30	1.9	30	85	3	80	22	5	17	54	1.63
31874492--31874571	32	2.3	35	87	10	112	68	3	3	23	1.22
31880098--31880197	26	3.9	25	76	8	87	27	16	30	27	1.96
31883293--31883335	19	2.3	19	100	0	86	46	44	0	9	1.35
31886147--31886216	30	2.3	30	82	7	79	20	14	18	47	1.83
31895394--31895722	156	2.1	154	80	9	346	41	1	31	26	1.64
31895555--31895606	26	2.0	25	85	3	68	50	0	13	36	1.42
31895985--31896049	29	2.3	28	83	2	76	53	12	6	27	1.61
31899648--31899689	7	5.7	7	86	8	57	0	11	0	88	0.53
31899647--31899689	8	5.6	8	83	10	63	0	11	0	88	0.52
31899647--31899689	15	2.9	14	90	10	68	0	11	0	88	0.52
31899647--31899689	22	1.9	23	90	4	70	0	11	0	88	0.52
31899649--31899702	22	2.4	23	78	3	56	3	16	0	79	0.87
31900259--31900316	17	3.4	17	78	4	55	50	10	17	22	1.76
31904259--31904305	12	3.5	13	85	14	60	2	21	0	76	0.89
31904259--31904305	21	2.3	21	85	10	62	2	21	0	76	0.89
31913935--31914009	30	2.5	30	86	4	98	40	41	9	9	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31914133--31914184	24	2.2	24	89	0	77	34	48	0	17	1.48
31914141--31914186	24	1.9	24	95	0	83	34	45	0	19	1.51
31916560--31916600	21	2.0	21	95	0	73	51	24	0	24	1.49
31925616--31925642	2	13.5	2	100	0	54	48	0	0	51	1.00
31933590--31933835	30	8.3	29	78	8	165	35	2	26	34	1.70
31933603--31933835	60	3.9	58	78	6	207	35	2	27	34	1.71
31934754--31934803	26	2.0	25	84	11	66	24	2	0	74	0.93
31934763--31934794	16	1.9	17	93	6	57	21	3	0	75	0.95
31937216--31937267	26	2.0	26	92	0	86	21	13	21	44	1.86
31939134--31939213	39	2.0	40	87	2	117	28	18	18	33	1.95
31944087--31944166	39	2.0	40	87	2	117	28	18	18	33	1.95
31944803--31944929	42	3.0	42	97	0	236	26	31	2	39	1.69
31944846--31944916	25	3.2	25	59	29	59	26	35	1	36	1.66
31947269--31947363	29	3.3	29	75	5	102	37	24	13	24	1.91
31947252--31947394	58	2.5	59	81	4	175	33	23	13	29	1.93
31947353--31947604	28	8.7	27	70	14	148	25	23	18	32	1.97
31947351--31947604	57	4.4	57	83	8	316	24	24	18	32	1.97
31947351--31947604	118	2.2	118	85	4	338	24	24	18	32	1.97
31947868--31947924	15	3.8	15	76	13	55	38	29	5	26	1.78
31950136--31950284	52	2.9	52	84	0	199	23	14	25	36	1.92
31957367--31957551	52	3.6	52	81	3	212	26	16	24	32	1.96
31958644--31958671	7	4.0	7	100	0	56	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31960732--31960768	18	2.1	18	94	0	65	43	2	13	40	1.58
31960745--31960850	33	3.2	33	77	5	124	48	0	7	44	1.31
31960746--31960874	66	2.0	66	83	6	163	51	0	6	42	1.27
31960801--31960892	45	2.1	45	84	10	118	54	2	3	40	1.29
31961339--31961436	51	1.9	51	81	4	117	63	1	2	33	1.13
31967220--31967252	15	2.1	17	88	11	52	51	0	0	48	1.00
31969969--31970004	17	2.1	17	100	0	72	33	0	38	27	1.57
31970650--31970729	38	2.1	38	83	0	97	21	22	23	32	1.98
31986141--31986182	23	1.9	23	85	9	61	50	2	4	42	1.36
31986895--31986987	12	7.8	12	69	6	64	66	18	6	8	1.40
31986897--31986990	23	4.0	24	72	4	75	64	18	7	9	1.45
31986972--31987016	20	2.3	19	84	7	54	73	13	4	8	1.23
31989654--31989696	21	2.0	22	90	4	70	20	0	6	72	1.08
31989654--31989696	22	2.0	21	86	4	59	20	0	6	72	1.08
31990624--31990665	20	2.2	20	86	4	59	71	9	7	11	1.31
32007171--32007344	43	4.1	43	82	3	174	29	24	18	27	1.98
32007374--32007403	14	2.1	14	93	0	51	50	26	16	6	1.70
32007291--32007479	97	1.9	99	81	4	231	32	25	17	24	1.97
32007388--32007485	43	2.3	43	85	1	135	29	23	20	26	1.99
32007758--32007895	66	2.1	66	82	5	163	15	24	18	41	1.89
32013590--32013835	70	3.7	70	67	23	213	42	0	8	48	1.37
32013717--32013754	14	2.7	14	100	0	76	42	0	5	52	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32013729--32013791	22	2.9	22	67	32	62	49	1	3	46	1.27
32014571--32014595	13	1.9	13	100	0	50	32	24	4	40	1.73
32016127--32016193	34	2.0	34	81	0	80	38	10	38	11	1.77
32016347--32016435	42	2.1	41	85	2	115	19	17	17	44	1.86
32017076--32017117	22	1.9	22	100	0	84	54	14	7	23	1.64
32017940--32018163	41	5.6	39	75	10	170	22	25	15	36	1.93
32018009--32018158	77	1.9	78	82	6	189	23	24	16	36	1.94
32030908--32030999	30	3.1	30	95	0	157	21	8	38	31	1.84
32032063--32032100	14	2.7	14	84	11	51	10	18	2	68	1.30
32032859--32032911	21	2.5	21	82	11	65	33	26	11	28	1.91
32039993--32040035	21	2.0	22	82	13	54	32	16	2	48	1.58
32041304--32041963	335	2.0	335	92	0	1104	27	24	21	25	1.99
32042023--32042061	16	2.4	17	91	4	62	53	5	35	5	1.45
32042365--32042405	21	2.0	21	85	9	57	60	9	26	2	1.40
32042520--32042558	17	2.2	18	90	4	62	15	17	12	53	1.72
32055630--32055699	24	2.9	23	76	14	61	54	1	1	42	1.18
32058060--32058097	18	2.1	19	85	5	51	39	0	13	47	1.42
32058337--32058379	22	1.9	23	90	4	70	18	2	6	72	1.19
32068275--32068363	21	4.2	21	69	11	56	60	8	16	13	1.57
32068296--32068383	41	2.1	41	79	4	97	56	10	20	12	1.64
32068255--32068484	61	3.8	61	77	9	175	55	10	17	16	1.69
32068229--32068463	20	11.6	20	68	8	107	54	11	17	16	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32068447--32068502	21	2.8	21	81	5	62	58	8	16	16	1.61
32068889--32069056	40	4.2	40	73	11	123	55	7	14	22	1.64
32068916--32069062	40	3.7	40	74	13	124	54	6	15	23	1.65
32069025--32069076	18	2.8	18	79	5	50	53	7	13	25	1.65
32068931--32069167	78	3.0	76	76	9	194	56	5	14	22	1.59
32069008--32069167	19	8.3	19	71	15	98	57	6	15	21	1.59
32068987--32069167	39	4.6	39	70	16	117	57	6	14	22	1.59
32068987--32069168	20	9.3	20	70	12	78	57	6	14	21	1.58
32071356--32071430	24	3.1	24	92	0	114	26	13	6	53	1.64
32071364--32071442	24	3.3	24	89	0	95	29	15	7	48	1.72
32071988--32072160	20	8.8	20	66	16	65	55	9	12	21	1.66
32072120--32072208	39	2.3	38	81	9	99	53	15	11	19	1.71
32072505--32072618	40	2.7	42	84	8	135	54	8	14	21	1.68
32072511--32072720	20	10.3	20	71	12	115	58	9	13	18	1.61
32072695--32072742	24	2.0	24	88	8	71	64	10	10	14	1.49
32074244--32074323	31	2.6	31	83	0	88	22	37	15	25	1.93
32076471--32076663	102	1.9	102	95	0	350	31	8	23	35	1.86
32080336--32080380	21	2.0	23	87	8	67	26	4	6	62	1.39
32091005--32091097	41	2.3	41	94	0	159	38	27	5	27	1.78
32091089--32091128	17	2.4	17	86	0	53	47	22	12	17	1.81
32096209--32096234	4	6.5	4	100	0	52	50	26	0	23	1.50
32105183--32105217	18	1.9	18	94	0	61	37	20	11	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32106375--32106423	25	2.0	24	84	7	64	28	0	8	63	1.23
32109146--32109231	43	2.0	44	88	2	129	34	6	6	51	1.56
32109283--32109322	14	2.9	14	80	0	53	45	45	0	10	1.37
32111104--32111497	150	2.7	144	82	8	456	49	15	1	33	1.54
32111658--32111692	15	2.3	15	95	0	61	71	0	0	28	0.86
32119674--32119795	28	4.3	29	70	10	92	27	19	16	36	1.93
32119674--32119887	57	3.8	58	83	5	267	25	20	17	36	1.94
32122710--32122754	23	2.0	23	87	8	67	57	6	8	26	1.54
32124134--32124161	9	3.1	9	100	0	56	67	0	0	32	0.91
32124273--32124317	13	3.4	14	79	11	51	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171