genome.fa.s3.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  106  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34241680--34241704	13	1.9	13	100	0	50	56	0	8	36	1.29
34242496--34242547	24	2.2	24	89	0	77	57	7	1	32	1.38
34243533--34243695	23	7.3	23	74	14	135	41	22	25	11	1.87
34243536--34243610	39	1.9	39	88	0	114	42	21	24	12	1.86
34243575--34243695	48	2.6	46	85	7	163	38	23	26	11	1.89
34247097--34247136	16	2.5	16	91	0	62	15	15	30	40	1.87
34248574--34248691	58	2.0	58	96	0	218	25	20	19	34	1.96
34252397--34252605	50	4.1	50	84	2	265	21	25	15	37	1.93
34252531--34252629	26	3.9	25	76	10	94	20	24	16	39	1.92
34252532--34252646	26	4.8	22	70	20	63	19	24	15	40	1.90
34252532--34252676	71	2.0	74	86	6	206	22	24	14	38	1.91
34257947--34258138	50	3.9	50	77	10	180	21	28	15	34	1.94
34258016--34258106	46	2.0	44	87	4	128	20	25	14	39	1.90
34258098--34258156	24	2.5	24	88	0	82	18	32	16	32	1.94
34260023--34260062	20	1.9	22	90	10	66	50	0	2	47	1.14
34260026--34260098	29	2.4	31	90	4	114	52	0	2	45	1.15
34260026--34260105	30	2.7	29	81	12	92	50	0	2	47	1.14
34261066--34261106	6	6.8	6	97	0	64	43	0	56	0	0.99
34261160--34261207	13	3.5	13	81	10	60	56	0	0	43	0.99
34264985--34265028	21	2.2	20	84	12	54	43	11	20	25	1.85
34265108--34265137	16	1.9	16	93	6	53	46	10	6	36	1.64
34265231--34265294	10	6.8	9	76	11	58	31	3	1	64	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34265231--34265294	29	2.2	28	82	15	78	31	3	1	64	1.19
34267422--34267486	10	6.4	10	70	8	51	24	3	3	69	1.17
34271340--34271415	20	3.8	20	74	6	73	39	21	28	10	1.86
34278927--34279060	40	3.5	40	74	12	145	33	21	21	23	1.97
34278967--34279089	35	3.4	35	76	10	138	31	25	20	22	1.98
34278927--34279252	75	4.4	75	80	5	360	33	22	21	22	1.97
34279073--34279174	35	3.0	33	74	14	98	30	24	24	20	1.99
34285114--34285323	25	8.3	25	85	4	219	35	25	16	22	1.95
34285113--34285347	25	9.2	27	78	11	118	34	25	17	22	1.96
34285820--34285847	13	2.2	13	100	0	56	57	14	0	28	1.38
34288695--34288770	37	2.1	35	83	16	93	42	1	1	55	1.16
34288695--34288770	12	6.8	11	72	19	52	42	1	1	55	1.16
34288696--34288802	20	5.8	18	70	20	69	42	1	2	53	1.26
34293007--34293051	22	2.0	23	82	4	56	28	8	6	55	1.56
34293800--34293848	25	1.9	26	91	4	82	32	0	2	65	1.04
34293931--34293968	20	1.9	19	85	15	51	34	0	0	65	0.93
34295330--34295369	20	2.0	21	95	5	73	52	5	0	42	1.23
34302039--34302080	22	2.0	22	90	4	68	38	0	0	61	0.96
34306942--34307019	39	2.0	39	97	0	147	11	12	28	47	1.76
34306943--34307031	39	2.3	39	92	3	144	11	13	26	48	1.76
34315277--34315496	105	2.1	105	82	5	257	26	21	31	19	1.97
34322562--34322623	29	2.1	29	84	0	79	35	6	19	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34322576--34322632	29	2.0	29	93	6	100	38	7	15	38	1.75
34325931--34325961	16	1.9	16	93	0	53	58	0	3	38	1.15
34328911--34328945	18	1.9	18	94	0	61	45	20	25	8	1.79
34333820--34334169	175	2.0	175	88	1	513	25	19	16	39	1.92
34336992--34337107	43	2.7	42	80	6	144	18	30	26	24	1.98
34337419--34337460	21	2.0	21	95	0	75	2	47	21	28	1.63
34337456--34337603	66	2.2	66	87	2	217	16	23	15	44	1.85
34343020--34343773	49	14.6	49	76	13	640	46	5	2	46	1.39
34343020--34343475	97	4.5	98	80	9	524	45	5	2	47	1.38
34343068--34345042	18	113.3	18	63	21	343	46	4	2	45	1.38
34343370--34345044	160	10.3	161	76	14	1135	46	5	2	45	1.39
34343713--34343820	31	3.3	31	74	12	108	46	3	0	50	1.19
34343695--34343840	67	2.2	67	93	0	247	44	4	0	50	1.26
34343756--34344023	49	5.2	49	75	14	234	46	5	1	46	1.37
34343535--34344000	228	2.1	226	92	0	770	46	4	2	46	1.36
34344101--34344208	31	3.3	31	74	12	108	46	3	0	50	1.19
34344083--34344228	67	2.2	67	93	0	247	44	4	0	50	1.26
34344144--34344239	49	2.0	49	95	0	174	45	5	0	48	1.24
34344217--34344247	8	3.8	8	95	4	53	58	0	0	41	0.98
34343353--34344918	388	4.1	388	93	4	2704	46	4	2	45	1.39
34344320--34344391	30	2.4	30	83	6	83	50	1	1	47	1.18
34344319--34344769	210	2.2	208	92	0	740	47	4	2	46	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34344654--34344882	66	3.2	66	66	22	163	48	4	3	43	1.38
34344690--34344761	30	2.4	30	83	6	83	50	1	1	47	1.18
34344610--34345038	152	2.8	153	95	3	770	47	4	3	44	1.40
34344842--34344913	30	2.4	30	83	6	83	50	1	1	47	1.18
34344127--34344986	370	2.3	365	87	6	1266	46	4	2	45	1.38
34348422--34348465	20	2.1	21	83	4	54	31	13	2	52	1.53
34349829--34349877	20	2.5	20	86	0	62	32	8	14	44	1.74
34352062--34352092	16	1.9	16	93	0	53	29	9	12	48	1.73
34356559--34356591	17	1.9	17	88	11	50	33	6	0	60	1.21
34356542--34356610	37	1.9	35	85	11	95	36	4	2	56	1.34
34360719--34360759	17	2.4	17	87	0	55	14	14	12	58	1.63
34364050--34364089	20	2.0	20	100	0	80	20	10	10	60	1.57
34364052--34364100	20	2.5	19	90	9	73	20	8	8	63	1.48
34365477--34365534	27	2.1	27	90	0	89	17	22	24	36	1.95
34366490--34366589	40	2.5	41	78	6	114	35	7	13	45	1.70
34366521--34366580	20	3.0	20	80	0	66	31	8	15	45	1.75
34366671--34366714	22	1.9	24	86	9	65	40	6	2	50	1.42
34367418--34367575	43	3.7	43	75	0	154	23	16	21	38	1.93
34367414--34367604	86	2.2	86	80	0	220	24	16	19	39	1.91
34379273--34379325	25	2.1	25	100	0	106	37	22	16	22	1.94
34380029--34380070	19	2.3	18	84	8	57	23	4	0	71	1.05
34382489--34382572	21	4.0	21	81	1	89	25	27	30	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34386053--34386093	20	2.0	20	90	0	64	48	2	36	12	1.54
34386378--34386405	7	4.0	7	100	0	56	14	0	0	85	0.59
34387435--34387518	5	16.8	5	80	9	100	39	19	5	35	1.76
34387426--34387518	25	3.7	25	89	0	132	39	19	6	34	1.77
34394125--34394149	12	2.1	12	100	0	50	24	8	0	68	1.16
34394551--34394590	5	8.4	5	82	17	50	17	2	0	80	0.83
34394508--34394586	19	4.2	18	70	19	63	25	2	1	70	1.07
34394533--34394633	42	2.4	42	80	11	109	25	1	1	70	1.09
34407202--34407265	26	2.5	26	78	0	74	43	20	14	21	1.87
34407379--34407435	21	2.7	21	81	8	62	10	19	38	31	1.86
34414338--34414386	2	24.5	2	100	0	98	51	0	0	48	1.00
34414703--34414771	33	2.1	33	83	5	86	44	15	4	34	1.67
34416068--34416138	33	2.2	33	89	2	108	40	14	2	42	1.60
34416205--34416230	2	13.0	2	100	0	52	0	50	0	50	1.00
34416230--34416268	2	19.5	2	100	0	78	48	0	0	51	1.00
34416579--34416678	29	3.7	27	84	9	132	24	15	10	51	1.73
34416577--34416678	53	1.9	53	90	6	161	24	14	10	50	1.75
34420837--34420981	30	4.9	30	74	3	123	35	22	4	37	1.73
34420839--34420981	58	2.4	59	82	4	164	36	22	4	37	1.74
34425467--34425511	23	1.9	24	86	4	65	75	2	20	2	1.01
34425466--34425517	24	2.2	22	80	12	59	71	5	19	3	1.22
34426330--34426411	14	5.7	14	70	18	53	71	2	25	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34426350--34426383	13	2.8	12	82	8	50	79	0	20	0	0.73
34427262--34427543	49	5.8	48	75	8	187	36	15	26	21	1.93
34427251--34427543	98	3.0	97	77	5	254	36	14	26	21	1.92
34427799--34427975	46	4.0	43	83	7	176	32	25	16	25	1.97
34427828--34427975	46	3.2	46	90	0	235	33	22	18	25	1.97
34427998--34428155	73	2.2	72	84	6	203	37	18	24	20	1.94
34428123--34428212	48	1.9	46	88	4	135	41	16	21	21	1.91
34428103--34428719	220	2.8	223	85	4	825	40	18	19	21	1.91
34428619--34428806	76	2.5	76	90	0	286	40	20	19	19	1.91
34428695--34429085	124	3.2	124	85	0	523	40	18	19	21	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171