genome.fa.s3.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  122  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38845208--38845300	39	2.3	42	83	5	111	29	31	12	26	1.93
38845916--38845975	29	2.1	29	87	0	84	25	51	10	13	1.71
38847317--38847364	17	2.9	16	78	9	60	10	8	6	75	1.20
38854870--38854913	12	3.7	12	79	11	54	22	2	0	75	0.92
38854884--38855063	63	2.8	61	84	14	238	43	0	3	53	1.17
38854884--38855058	67	2.7	65	86	11	245	42	0	3	54	1.17
38858763--38859523	49	15.6	49	72	6	481	38	16	24	20	1.93
38858773--38859602	98	8.5	98	85	1	1006	37	17	24	20	1.94
38858773--38859556	291	2.7	289	83	3	1014	37	17	24	20	1.93
38859933--38860051	41	3.0	38	74	12	114	28	26	18	26	1.98
38859931--38860071	39	3.5	39	74	14	126	29	29	15	26	1.96
38860424--38860455	14	2.2	15	94	5	57	68	0	0	31	0.90
38865382--38865414	11	2.8	12	90	4	50	12	21	45	21	1.84
38866074--38866574	98	5.1	98	89	0	705	18	24	17	38	1.92
38866113--38866571	49	9.4	49	71	10	294	18	25	17	38	1.93
38870264--38870302	21	1.9	21	89	5	62	66	7	12	12	1.43
38876289--38876318	14	2.2	14	94	5	53	36	10	23	30	1.87
38888810--38888848	20	2.0	20	84	0	51	23	20	12	43	1.86
38891604--38891635	15	2.1	15	94	0	55	25	0	3	71	1.00
38891564--38891659	11	9.0	11	71	23	64	23	3	2	70	1.12
38891606--38891698	36	2.5	39	77	12	95	19	5	4	70	1.23
38895940--38896025	30	2.9	30	83	10	104	37	4	16	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38895946--38896041	30	3.2	30	82	8	99	39	5	18	36	1.73
38897257--38897322	30	2.2	30	86	5	89	9	18	25	46	1.78
38898705--38898791	30	2.9	31	81	6	99	40	4	14	40	1.67
38902879--38902920	18	2.3	18	87	0	57	0	28	2	69	1.01
38926905--38927101	43	4.6	43	82	3	245	26	26	12	34	1.92
38928982--38929037	18	3.1	18	92	0	85	33	28	17	19	1.95
38935097--38935148	12	4.1	12	76	13	50	61	0	38	0	0.96
38935098--38935143	15	2.9	15	87	6	56	65	0	34	0	0.93
38935573--38935611	17	2.3	17	86	0	51	20	17	10	51	1.74
38936025--38936100	38	2.0	38	97	0	143	46	15	18	19	1.85
38938922--38939057	41	3.4	41	67	13	104	23	22	22	32	1.98
38938922--38939084	77	2.1	77	89	0	245	26	22	19	31	1.98
38939036--38939120	36	2.4	36	85	0	107	32	21	17	28	1.96
38939073--38939219	77	1.9	77	87	2	215	30	17	19	33	1.94
38938983--38939197	113	1.9	113	83	1	279	30	18	18	33	1.95
38941567--38941703	55	2.5	55	84	2	159	29	26	13	29	1.94
38946650--38946683	14	2.4	14	95	0	59	41	0	0	58	0.98
38946963--38947004	22	1.9	22	100	0	84	21	23	19	35	1.96
38947820--38947855	11	3.4	11	84	7	56	52	0	0	47	1.00
38947815--38947856	10	4.2	10	82	8	50	47	0	0	52	1.00
38952893--38952938	24	1.9	24	86	0	65	17	47	2	32	1.60
38957219--38957252	18	1.9	18	94	5	61	44	11	8	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38957220--38957258	17	2.3	17	86	8	53	48	12	10	28	1.74
38957364--38957398	18	1.9	18	88	0	52	37	5	5	51	1.50
38958961--38959033	31	2.4	31	81	6	94	27	8	2	61	1.38
38959379--38959585	106	1.9	107	87	4	301	29	13	16	40	1.87
38972719--38972760	21	2.0	22	85	4	59	64	4	19	11	1.44
38976365--38976397	16	2.1	16	88	5	50	0	18	0	81	0.68
38990946--38990982	16	2.2	17	90	4	58	37	13	5	43	1.67
38992870--38992916	18	2.6	18	82	3	58	21	31	17	29	1.96
38998155--38998219	22	3.0	22	90	4	96	12	30	23	33	1.91
39001514--39001548	16	2.1	18	89	10	56	34	20	11	34	1.88
39016953--39017000	18	2.7	17	76	20	53	12	18	0	68	1.20
39017003--39017062	29	2.1	28	82	11	70	8	31	1	58	1.38
39018028--39018081	21	2.5	22	78	6	65	25	11	5	57	1.55
39021552--39021615	24	2.7	24	83	9	85	26	21	25	26	2.00
39022868--39022997	65	2.0	65	90	0	206	26	10	17	45	1.80
39025615--39025722	24	4.5	24	75	9	85	22	21	23	33	1.97
39026809--39026923	51	2.3	49	87	3	167	34	14	20	30	1.92
39027903--39027941	21	1.9	21	89	5	62	30	0	23	46	1.53
39028951--39029067	24	4.9	24	88	0	171	30	17	26	24	1.97
39028950--39029067	48	2.5	48	91	0	191	30	17	26	25	1.97
39033116--39033226	57	1.9	56	83	3	141	45	9	18	27	1.80
39037538--39037603	33	2.0	33	93	0	114	33	9	15	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39042211--39042241	15	2.1	15	93	0	53	83	0	16	0	0.64
39045953--39045980	2	14.0	2	100	0	56	50	0	0	50	1.00
39047939--39048011	37	2.0	37	94	5	130	50	13	6	28	1.67
39050583--39050632	20	2.5	20	80	0	55	46	8	10	36	1.67
39053088--39053141	23	2.2	26	87	9	78	35	12	11	40	1.79
39060448--39060503	26	2.2	26	84	9	71	39	10	14	35	1.81
39060708--39060754	24	1.9	25	87	12	71	21	2	10	65	1.33
39060830--39060872	11	3.9	12	88	11	58	30	0	0	69	0.88
39063335--39063449	57	2.0	57	100	0	230	31	20	29	18	1.96
39065863--39065902	18	2.3	18	86	4	55	52	10	17	20	1.72
39081641--39081861	95	2.3	96	80	5	236	37	25	11	25	1.89
39081701--39082360	45	14.4	45	81	4	601	33	26	14	25	1.95
39081652--39082381	91	8.0	91	80	3	662	33	25	14	25	1.95
39081701--39082381	136	5.0	136	82	4	699	33	25	15	25	1.95
39083309--39083356	11	4.0	11	75	19	51	29	0	0	70	0.87
39084544--39084634	40	2.3	40	83	7	105	30	6	15	47	1.71
39084543--39084634	20	4.6	19	77	11	78	30	6	15	47	1.70
39084726--39084776	23	2.3	23	83	10	61	41	7	0	50	1.31
39087644--39087722	24	3.4	23	70	10	72	40	24	7	27	1.82
39087666--39087743	21	3.6	21	73	10	84	38	23	7	30	1.83
39087644--39087744	45	2.2	45	92	0	175	39	23	7	28	1.83
39088312--39088405	24	3.9	24	87	0	134	25	24	22	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39088399--39088463	27	2.4	27	100	0	130	35	20	18	26	1.95
39089185--39089213	8	3.6	8	100	0	58	75	0	24	0	0.80
39090899--39090969	30	2.4	30	83	6	92	14	11	23	50	1.74
39094254--39094292	3	13.3	3	94	5	71	30	0	0	69	0.89
39095606--39095661	23	2.5	22	82	11	60	37	12	1	48	1.52
39095646--39095911	145	1.8	145	88	4	412	42	10	3	43	1.55
39095801--39095957	51	3.2	49	67	16	126	47	8	3	40	1.52
39095801--39096015	98	2.1	102	88	5	330	45	7	3	43	1.51
39095981--39096031	24	2.3	22	83	12	61	43	5	0	50	1.26
39096394--39096445	3	17.3	3	79	0	59	55	0	9	34	1.32
39098852--39098879	14	2.0	14	100	0	56	28	7	21	42	1.79
39103313--39103371	27	2.2	27	81	6	66	45	1	5	47	1.34
39103321--39103391	27	2.7	27	84	6	83	45	1	1	52	1.18
39103543--39103591	24	2.1	23	84	3	62	63	4	0	32	1.13
39104540--39104603	30	2.0	33	85	8	89	51	1	1	45	1.20
39105676--39105789	59	1.9	60	82	8	144	43	0	2	53	1.14
39105706--39105789	30	2.8	29	75	18	91	44	0	1	54	1.07
39105963--39105996	18	2.0	16	88	11	50	38	20	0	41	1.53
39120969--39121018	5	9.8	5	89	6	66	80	2	18	0	0.82
39122878--39123254	49	7.6	49	77	6	305	33	14	33	19	1.91
39122878--39123301	99	4.3	99	81	5	360	33	13	32	19	1.91
39122878--39123147	148	1.8	148	87	3	400	33	12	34	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39122873--39123205	148	2.2	149	82	4	397	33	13	33	19	1.91
39122875--39123317	49	9.0	49	74	7	195	33	14	31	20	1.92
39123550--39123723	42	4.2	39	76	15	138	30	26	16	27	1.96
39123577--39123799	46	5.1	45	80	10	205	32	25	16	26	1.96
39123956--39124769	429	1.9	431	89	4	1282	41	20	13	23	1.89
39130388--39130440	5	10.8	5	82	13	58	79	1	18	0	0.83
39130394--39130454	5	10.8	6	84	8	51	75	1	22	0	0.89
39131342--39131408	13	5.3	12	78	8	71	82	0	17	0	0.68
39131342--39131408	6	10.7	6	75	15	64	82	0	17	0	0.68
39131340--39131401	9	6.9	9	78	7	63	82	0	17	0	0.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171