genome.fa.s3.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  130  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40759876--40759961	30	2.9	30	94	3	147	47	8	23	20	1.77
40760426--40760477	25	2.2	23	82	6	59	5	15	3	75	1.14
40768166--40768343	52	3.4	52	92	0	284	26	14	24	34	1.94
40768315--40768364	26	1.9	26	87	0	73	20	18	30	32	1.96
40769011--40769051	21	2.0	21	85	0	55	29	7	29	34	1.84
40777365--40777557	52	3.7	52	88	0	278	25	13	25	34	1.93
40780624--40780685	30	2.1	30	87	0	88	58	12	3	25	1.50
40783387--40783447	17	3.6	17	80	6	79	37	1	1	59	1.17
40783390--40783447	16	3.4	17	78	7	64	39	1	1	56	1.19
40783389--40783464	34	2.2	34	81	6	100	40	2	1	55	1.22
40784163--40784199	3	12.3	3	100	0	74	67	0	0	32	0.91
40785319--40785634	29	10.7	29	73	16	192	37	26	3	32	1.75
40785351--40785631	29	9.6	29	74	11	225	38	25	3	32	1.73
40785351--40785811	59	7.9	59	80	7	410	36	27	4	32	1.76
40785351--40785838	88	5.6	86	71	15	288	36	26	4	32	1.77
40785351--40785838	29	16.7	28	70	18	195	36	26	4	32	1.77
40785362--40785834	117	4.0	116	77	9	451	35	26	4	32	1.78
40791339--40791397	2	30.0	2	93	3	102	49	1	0	49	1.11
40795369--40795648	58	4.8	59	83	7	333	33	1	29	35	1.68
40795444--40795648	28	7.0	29	68	23	128	32	1	29	36	1.67
40795453--40795705	29	8.7	29	67	22	113	31	1	28	39	1.65
40797637--40797696	17	3.5	17	79	0	57	51	5	3	40	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40809705--40809767	24	2.6	24	82	0	81	11	33	23	31	1.90
40809757--40809974	30	7.4	30	90	3	334	13	30	24	31	1.94
40809757--40810037	60	5.0	57	85	6	310	14	29	24	32	1.94
40809942--40810031	24	3.6	24	78	4	90	11	32	22	34	1.89
40819102--40819137	4	8.8	4	87	6	54	72	0	0	27	0.85
40819182--40819248	26	2.5	27	79	13	77	32	5	1	59	1.31
40819829--40819859	2	15.0	2	93	6	53	48	0	3	48	1.17
40822386--40822631	122	2.0	118	87	3	348	34	3	15	47	1.63
40824412--40824450	21	1.9	21	89	5	62	28	0	25	46	1.53
40825460--40825576	24	4.9	24	81	0	144	34	16	25	23	1.95
40825459--40825576	48	2.5	48	85	0	164	33	16	25	24	1.95
40828467--40828504	19	2.0	19	100	0	76	26	10	21	42	1.85
40829706--40829891	93	2.0	92	89	1	282	41	10	10	37	1.74
40832147--40832203	21	2.7	21	83	0	69	35	24	15	24	1.95
40832875--40833116	52	4.7	51	86	4	315	31	23	17	27	1.97
40836220--40836340	23	5.2	23	81	11	147	12	25	22	39	1.89
40836244--40836329	25	3.6	24	73	17	74	12	27	20	38	1.90
40836220--40836340	48	2.6	46	85	7	163	12	25	22	39	1.89
40837568--40837608	17	2.4	17	95	0	73	31	17	17	34	1.93
40840766--40840823	4	13.8	4	82	13	64	44	0	1	53	1.10
40846522--40846554	8	4.1	8	92	0	57	51	0	36	12	1.39
40846821--40846868	26	1.9	26	87	8	73	54	4	2	39	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40848744--40848780	18	2.1	18	85	14	51	64	0	0	35	0.94
40848741--40848780	16	2.5	17	84	12	57	67	0	0	32	0.91
40849810--40849876	30	2.2	32	86	10	95	43	0	4	52	1.21
40849807--40849882	30	2.6	29	78	17	84	42	0	3	53	1.19
40854984--40855011	12	2.3	12	100	0	56	21	0	7	71	1.09
40855965--40856013	20	2.5	19	74	9	53	44	8	10	36	1.68
40858501--40858548	24	2.0	24	87	4	69	45	2	2	50	1.25
40869162--40869365	10	20.3	10	67	17	66	33	0	4	60	1.24
40869275--40869351	30	2.6	30	83	8	86	32	0	1	66	1.00
40869262--40869351	38	2.3	40	84	11	123	35	0	1	63	1.02
40869163--40869365	20	10.6	19	70	15	100	33	0	4	60	1.25
40869263--40869351	40	2.3	38	86	9	117	34	0	1	64	1.01
40869287--40869373	38	2.3	38	84	7	106	31	1	2	65	1.12
40870064--40870115	26	2.0	26	81	7	61	42	3	7	46	1.51
40875568--40875612	24	1.9	23	86	13	65	64	20	15	0	1.29
40876515--40876681	30	5.6	30	88	4	239	40	19	1	38	1.59
40876515--40876681	90	1.9	90	91	2	273	40	19	1	38	1.59
40884507--40884543	18	2.1	18	94	0	65	51	0	24	24	1.49
40884507--40884543	12	3.1	12	84	0	56	51	0	24	24	1.49
40884645--40884745	38	2.6	40	71	10	100	21	19	28	29	1.98
40885953--40886029	29	2.7	29	89	0	109	37	14	18	29	1.90
40885982--40886075	29	3.2	29	83	3	100	40	14	17	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40886059--40886103	18	2.5	18	96	0	81	55	15	4	24	1.59
40886919--40887048	31	4.3	31	84	1	156	31	32	13	23	1.92
40886919--40887052	62	2.2	62	87	0	196	31	32	12	23	1.92
40887495--40887529	11	3.2	11	87	0	52	48	0	0	51	1.00
40887475--40887518	18	2.5	18	92	3	72	43	2	2	52	1.26
40887556--40887580	13	1.9	13	100	0	50	40	24	8	28	1.83
40889457--40889807	29	11.9	30	79	7	344	35	26	3	34	1.74
40889458--40889862	59	6.9	58	81	5	399	35	26	3	34	1.74
40889453--40889811	88	4.1	88	82	7	399	35	26	3	34	1.74
40889453--40889862	58	7.0	59	80	7	403	35	26	3	34	1.74
40893378--40893408	16	1.9	16	93	0	53	51	12	6	29	1.65
40899050--40899089	12	3.4	12	79	6	55	25	5	2	67	1.23
40899049--40899096	23	2.1	23	100	0	96	27	4	4	64	1.30
40899057--40899095	12	3.3	12	78	7	53	25	5	5	64	1.35
40899453--40899536	36	2.3	36	91	0	141	59	21	5	13	1.55
40908319--40908351	2	16.5	2	100	0	66	48	0	0	51	1.00
40911714--40911747	16	2.1	16	100	0	68	44	11	23	20	1.84
40915193--40915234	17	2.4	18	80	7	52	40	0	0	59	0.97
40920271--40920462	11	18.3	10	65	21	56	19	5	5	69	1.27
40920645--40920689	19	2.3	21	78	17	53	17	4	8	68	1.32
40920636--40920698	25	2.4	27	78	13	76	25	3	6	65	1.32
40921791--40921871	29	2.9	27	71	10	81	35	3	16	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40924170--40924195	3	8.7	3	100	0	52	34	0	65	0	0.93
40925669--40925776	43	2.5	43	81	0	135	25	24	19	31	1.98
40925655--40925786	43	3.1	43	76	4	131	28	23	17	30	1.97
40931651--40931697	24	2.0	24	86	0	67	25	6	23	44	1.77
40939605--40939652	25	1.9	25	82	0	60	14	29	16	39	1.88
40944746--40945123	41	9.1	41	79	6	379	22	26	27	23	1.99
40944746--40945189	82	5.4	82	78	6	436	22	26	27	23	2.00
40944765--40945093	123	2.7	121	86	3	433	21	27	28	22	1.99
40945012--40945090	24	3.4	24	68	16	67	21	22	36	18	1.95
40947574--40948499	112	8.3	112	92	3	1462	45	2	4	47	1.38
40947574--40948499	440	2.1	446	91	2	1526	45	2	4	47	1.38
40948491--40948626	22	6.3	22	68	17	79	44	1	0	52	1.15
40948381--40948617	12	19.6	12	65	19	66	44	2	2	50	1.29
40948546--40948627	4	20.0	4	69	14	51	43	1	0	54	1.07
40947964--40948568	224	2.7	223	88	5	891	44	3	4	47	1.38
40948546--40948625	8	9.8	8	75	17	67	43	1	0	55	1.08
40948491--40948624	30	4.9	27	75	16	100	44	1	0	53	1.15
40948647--40948712	33	2.1	32	94	5	116	42	6	9	42	1.61
40954145--40954301	66	2.4	66	85	1	217	42	17	26	14	1.87
40954519--40954547	15	1.9	15	100	0	58	13	3	34	48	1.60
40960164--40960220	24	2.4	24	90	0	87	50	10	14	24	1.73
40960176--40960226	24	2.1	24	100	0	102	56	7	11	23	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40964700--40964739	20	2.0	21	85	14	57	57	0	27	15	1.38
40972851--40972888	14	2.7	14	95	0	67	47	28	5	18	1.70
40975284--40975539	58	4.4	57	79	11	218	37	3	27	31	1.74
40975331--40975548	29	7.4	29	71	19	141	38	2	27	32	1.69
40975293--40975515	118	1.9	115	83	9	283	37	3	28	30	1.73
40975521--40975743	30	7.4	30	74	10	161	36	1	23	38	1.65
40975505--40975743	60	4.0	59	77	8	223	37	1	22	38	1.64
40975505--40975760	30	8.5	29	74	9	156	35	2	22	39	1.67
40975505--40975743	90	2.7	87	81	9	282	37	1	22	38	1.64
40977973--40978930	92	10.4	92	93	0	1605	32	17	15	33	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171