genome.fa.s3.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  144  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43729691--43730073	147	2.6	144	83	9	445	36	4	22	36	1.75
43729662--43730078	59	7.1	59	77	12	238	36	5	23	35	1.77
43731840--43731869	16	1.9	15	93	6	51	46	6	6	40	1.56
43735684--43735717	12	2.8	12	91	8	52	55	11	14	17	1.68
43738213--43738240	3	9.3	3	100	0	56	67	32	0	0	0.91
43738239--43738302	3	22.0	3	82	6	69	64	3	3	29	1.24
43743957--43744009	21	2.5	21	82	17	65	66	3	9	20	1.37
43744820--43744876	20	2.8	19	75	15	51	43	12	0	43	1.41
43744592--43744876	143	2.0	140	86	8	373	41	10	2	45	1.54
43745224--43745267	3	14.7	3	100	0	88	65	0	0	34	0.93
43745269--43745297	3	9.7	3	100	0	58	34	0	31	34	1.58
43746207--43746259	15	3.6	14	82	7	61	43	0	5	50	1.25
43747499--43747557	29	2.0	30	90	3	93	50	13	5	30	1.63
43751491--43751530	3	13.3	3	100	0	80	32	0	35	32	1.58
43758862--43759044	20	9.1	20	88	0	267	19	19	28	32	1.96
43758862--43759044	60	3.0	60	91	0	294	19	19	28	32	1.96
43764558--43764776	79	2.8	79	87	1	305	31	24	19	25	1.98
43767306--43767336	13	2.5	13	94	5	55	58	12	0	29	1.35
43773938--43774145	53	4.2	53	74	14	163	27	37	16	19	1.93
43774002--43774201	41	4.6	42	77	15	147	28	37	16	18	1.92
43773964--43774188	94	2.4	94	85	1	299	28	37	16	17	1.91
43774046--43774146	53	1.9	53	95	0	184	25	38	17	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43774099--43774208	41	2.7	41	87	5	168	31	38	14	15	1.88
43775615--43775749	42	3.2	42	90	2	209	37	21	18	22	1.94
43777879--43777927	22	2.2	22	85	0	62	42	14	12	30	1.82
43778911--43779068	80	2.0	80	88	2	237	34	14	23	27	1.94
43779561--43779606	25	1.9	23	86	8	65	34	4	4	56	1.39
43781293--43781554	60	4.4	60	84	5	318	34	3	23	38	1.72
43781293--43781556	119	2.2	119	87	5	383	34	3	23	38	1.72
43781293--43781558	30	8.9	31	82	7	286	34	3	23	38	1.72
43782468--43782499	16	2.0	16	93	0	55	40	0	0	59	0.97
43782457--43782520	25	2.6	25	71	11	60	35	0	3	60	1.12
43782469--43782513	9	5.2	9	81	10	58	40	0	0	60	0.97
43782469--43782520	3	17.0	3	80	4	50	38	0	1	59	1.08
43783296--43783357	23	2.7	23	82	0	79	50	6	3	40	1.44
43783324--43783372	17	2.9	16	81	6	53	57	6	0	36	1.24
43783362--43783395	17	2.0	17	88	0	50	52	11	0	35	1.38
43783657--43784197	91	5.9	91	94	1	895	30	18	18	31	1.95
43783844--43784089	41	5.5	41	66	24	133	28	20	19	30	1.97
43783657--43784197	183	3.0	183	93	1	899	30	18	18	31	1.95
43783657--43784197	274	2.0	274	92	1	897	30	18	18	31	1.95
43784119--43784265	76	1.9	77	88	2	224	34	17	15	32	1.91
43795898--43796215	30	10.6	30	78	9	267	35	2	22	39	1.67
43795906--43796211	60	5.1	60	85	3	377	35	2	21	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43795890--43796215	90	3.6	89	83	6	390	34	2	23	39	1.68
43797120--43797151	16	2.0	16	93	0	55	40	0	0	59	0.97
43797121--43797165	9	5.2	9	81	10	58	40	0	0	60	0.97
43797121--43797172	3	17.0	3	80	4	50	38	0	1	59	1.08
43798025--43798058	17	2.0	17	88	0	50	52	11	0	35	1.38
43801254--43801353	7	14.7	7	89	6	143	14	17	1	68	1.28
43801874--43802721	209	4.1	209	84	4	1006	37	18	21	22	1.94
43802295--43802405	37	3.0	37	93	0	177	36	18	17	27	1.93
43802174--43802546	197	1.9	197	89	1	586	37	19	20	23	1.94
43804844--43805215	30	12.6	30	77	9	245	34	28	3	33	1.74
43804838--43805173	89	3.8	88	76	7	261	34	27	2	34	1.72
43805055--43805212	29	5.5	28	81	8	174	34	31	4	29	1.77
43804932--43805173	59	4.1	59	79	10	219	35	28	2	33	1.69
43805071--43805212	57	2.5	56	84	10	180	35	30	4	28	1.78
43806618--43806642	7	3.6	7	100	0	50	48	0	0	52	1.00
43806755--43806924	30	5.8	29	80	9	141	38	3	23	34	1.72
43806751--43806923	29	6.0	28	80	9	150	36	3	23	35	1.72
43806868--43806960	29	3.0	30	81	9	91	38	4	22	34	1.74
43806903--43806964	32	1.9	31	84	12	81	38	4	24	32	1.76
43808737--43808797	30	2.0	30	87	0	86	26	31	6	36	1.82
43812131--43812169	13	2.9	13	85	7	51	33	5	12	48	1.63
43813635--43813719	6	15.0	6	75	11	81	43	0	1	55	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43813642--43813719	17	4.6	17	88	4	106	42	0	1	56	1.07
43813630--43813719	11	8.0	11	74	14	76	42	0	1	56	1.06
43813659--43813736	34	2.3	34	82	4	86	47	0	2	50	1.15
43814438--43814508	33	2.2	33	79	5	81	49	5	7	38	1.54
43814773--43814797	11	2.3	11	100	0	50	84	8	8	0	0.79
43815689--43815794	29	3.6	29	71	22	87	33	30	4	32	1.78
43815715--43815810	29	3.3	29	70	8	86	34	29	5	31	1.79
43827953--43828544	76	7.9	76	85	7	743	32	15	20	31	1.94
43827964--43828531	38	15.3	37	65	15	224	32	15	20	31	1.93
43827958--43828541	145	4.0	146	86	5	777	33	15	20	31	1.93
43828465--43828636	92	1.9	91	92	1	290	33	18	18	30	1.94
43828969--43829057	6	16.0	6	72	15	75	42	0	1	56	1.06
43828981--43829054	11	6.8	11	75	20	59	39	0	1	59	1.06
43828976--43829034	17	3.6	16	86	6	82	38	0	1	59	1.08
43828973--43829057	27	3.1	27	81	8	109	43	0	1	55	1.07
43828982--43829056	10	7.0	10	76	13	60	41	0	1	57	1.07
43830128--43830163	18	2.1	17	89	5	54	86	2	8	2	0.77
43830727--43831046	164	2.0	163	91	3	529	25	16	13	45	1.83
43831180--43831334	59	2.6	59	82	4	170	30	32	4	32	1.78
43835078--43835166	23	4.0	22	81	7	99	38	26	22	12	1.90
43835075--43835173	23	4.3	23	78	5	94	41	25	21	12	1.87
43837450--43837503	24	2.3	24	84	6	67	59	7	7	25	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43837789--43837814	13	2.0	13	100	0	52	69	23	0	7	1.14
43841903--43841934	16	2.0	16	93	0	55	34	0	6	59	1.23
43843378--43843436	31	1.9	31	82	6	75	33	8	11	45	1.71
43848888--43849000	53	2.1	53	79	12	126	63	6	1	28	1.28
43848981--43849023	23	1.9	23	90	4	70	74	6	0	18	1.04
43851669--43851707	17	2.4	17	82	4	53	66	5	2	25	1.25
43861747--43861888	59	2.4	59	93	0	239	29	20	17	32	1.96
43863465--43863829	200	1.8	200	92	2	617	20	21	23	35	1.96
43870385--43870547	30	5.6	29	69	20	90	39	3	25	31	1.71
43870380--43870564	29	6.3	28	71	20	121	39	3	27	29	1.72
43870439--43870596	29	5.4	29	71	22	109	37	2	29	31	1.71
43870386--43870594	59	3.6	57	83	8	262	38	2	26	31	1.71
43870386--43870603	58	3.8	56	79	10	219	37	2	26	33	1.71
43870380--43870633	59	4.3	56	79	10	228	37	3	27	32	1.74
43870585--43870663	30	2.6	30	89	0	122	35	3	22	37	1.73
43870380--43870633	117	2.2	117	83	8	329	37	3	27	32	1.74
43872531--43872597	27	2.5	27	85	0	80	50	2	2	43	1.32
43872557--43872596	16	2.4	17	91	4	64	57	2	0	40	1.12
43872560--43872612	27	2.0	27	85	7	72	56	7	0	35	1.28
43875839--43876034	45	4.3	45	76	11	116	35	4	20	40	1.71
43875872--43876062	45	4.2	45	81	4	224	36	4	20	38	1.74
43875896--43876093	45	4.4	44	78	3	189	36	5	18	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43875896--43876093	90	2.2	90	90	0	315	36	5	18	39	1.74
43875896--43876119	90	2.5	90	87	1	297	35	5	18	40	1.75
43876285--43876318	7	5.0	7	92	3	52	41	0	11	47	1.40
43881503--43881548	24	1.9	23	86	8	65	56	8	4	30	1.49
43882601--43882638	18	2.2	17	86	13	51	2	13	2	81	0.90
43889294--43889366	37	1.9	38	94	2	130	30	9	15	45	1.78
43889294--43889376	37	2.2	38	89	4	123	30	12	15	42	1.83
43891148--43891210	21	3.1	20	75	4	63	19	9	14	57	1.64
43891371--43891441	16	4.4	16	84	5	99	30	22	2	43	1.68
43892073--43892123	20	2.5	20	83	0	66	31	35	5	27	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171