genome.fa.s3.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  114  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36368219--36368293	38	2.0	38	89	2	116	32	28	5	34	1.80
36380500--36381334	76	11.0	76	92	0	1370	35	15	17	32	1.91
36380500--36381334	227	3.7	228	93	0	1370	35	15	17	32	1.91
36381593--36381682	17	5.4	16	81	10	74	38	1	4	55	1.27
36381600--36381683	11	7.5	11	73	18	66	39	1	4	54	1.29
36381593--36381683	33	2.7	32	83	8	101	39	1	4	54	1.27
36381593--36381683	6	16.4	5	74	18	58	39	1	4	54	1.27
36382312--36382356	20	2.3	19	92	3	72	51	4	0	44	1.21
36382316--36382383	29	2.3	29	76	16	68	51	7	1	39	1.39
36382704--36382757	20	2.7	20	82	2	63	25	16	48	9	1.76
36383085--36383421	162	2.1	161	96	0	620	25	17	13	43	1.86
36383495--36384023	59	8.7	59	74	16	299	31	27	3	37	1.75
36383554--36383866	30	10.5	28	67	19	134	31	27	3	36	1.74
36383739--36383885	57	2.5	59	86	3	208	32	28	3	35	1.74
36383849--36383923	38	2.0	38	86	0	105	30	26	4	38	1.75
36383892--36383993	30	3.4	30	70	21	88	34	26	0	38	1.63
36383797--36383981	96	1.9	96	89	4	284	32	28	3	35	1.73
36383892--36384023	58	2.3	59	89	1	203	33	26	1	38	1.66
36383914--36383998	28	2.9	29	69	22	79	32	30	1	35	1.66
36383577--36384090	154	3.3	155	89	3	811	31	27	3	36	1.75
36384004--36384078	38	2.0	38	91	0	123	30	26	6	36	1.82
36383577--36384126	155	3.5	152	87	5	707	30	28	4	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36388218--36388263	21	2.2	21	88	0	65	19	13	19	47	1.81
36388248--36388273	10	2.6	10	100	0	52	7	11	23	57	1.59
36390668--36391194	50	10.6	50	80	2	535	25	22	16	36	1.94
36390668--36391194	150	3.5	149	83	4	629	25	22	16	36	1.94
36395194--36395336	67	2.1	69	83	6	177	39	6	18	34	1.77
36395313--36395521	94	2.2	92	81	8	253	39	4	17	38	1.70
36397408--36397446	19	2.1	19	86	13	55	38	2	2	56	1.27
36400482--36400520	19	2.1	19	86	13	55	35	2	5	56	1.35
36403332--36403377	24	1.9	23	86	8	65	56	6	4	32	1.45
36409262--36409321	23	2.6	23	81	5	77	30	11	20	38	1.88
36409286--36409331	23	2.0	23	83	8	58	39	10	17	32	1.84
36421213--36421248	18	1.9	19	94	5	65	27	0	0	72	0.85
36421214--36421255	10	4.6	9	77	16	50	30	0	0	69	0.89
36421832--36421890	23	2.4	25	86	5	86	40	1	1	55	1.20
36428665--36428814	55	2.7	55	83	4	160	30	25	15	28	1.96
36432228--36432265	18	2.1	18	90	0	58	2	13	13	71	1.26
36432625--36432664	16	2.4	17	87	4	55	0	30	0	70	0.88
36437916--36437941	11	2.4	11	100	0	52	84	0	15	0	0.62
36448437--36448477	15	2.8	15	85	3	57	0	29	0	70	0.87
36454363--36454467	37	2.8	37	83	1	138	27	29	18	24	1.98
36455459--36455491	17	1.9	17	93	0	57	51	9	18	21	1.73
36466988--36467103	37	3.1	37	87	1	151	26	29	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36470281--36470325	17	2.6	17	89	0	63	15	17	17	48	1.81
36471471--36471548	37	2.1	37	90	4	122	25	26	20	26	1.99
36479829--36479865	12	3.1	12	92	0	56	10	0	24	64	1.25
36479961--36479994	14	2.5	13	86	13	50	76	0	0	23	0.79
36480311--36480523	101	2.1	101	83	5	261	25	17	21	35	1.95
36480587--36480848	50	5.2	50	74	4	188	24	25	16	34	1.95
36480645--36480848	51	4.0	50	76	2	183	24	25	17	32	1.97
36481340--36481406	29	2.5	26	77	15	66	52	13	10	23	1.71
36489638--36489689	11	4.9	11	79	11	56	1	17	0	80	0.80
36489644--36489687	20	2.1	21	91	4	72	2	18	0	79	0.83
36490247--36490294	19	2.5	19	86	6	62	64	8	10	16	1.48
36490263--36490307	19	2.5	18	89	7	65	60	11	13	15	1.60
36492610--36492641	15	2.2	14	94	5	55	78	6	6	9	1.10
36498159--36498185	3	9.0	3	100	0	54	0	0	33	66	0.92
36498175--36498236	26	2.4	26	97	0	115	9	17	16	56	1.66
36498331--36498355	13	1.9	13	100	0	50	76	0	8	16	1.02
36504750--36504831	30	2.7	31	87	9	116	34	4	21	39	1.75
36504749--36504847	30	3.3	30	79	9	112	33	5	24	37	1.77
36504762--36504857	30	3.2	30	76	8	97	35	4	20	39	1.72
36514504--36514564	18	3.4	18	82	8	79	37	4	27	29	1.78
36514499--36514578	36	2.2	36	80	8	92	35	5	28	31	1.79
36516190--36516240	27	1.9	27	88	4	77	29	13	31	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36516252--36516647	28	13.6	30	65	21	148	34	2	29	32	1.72
36516222--36516650	58	7.4	59	86	5	570	34	3	29	32	1.73
36516221--36516650	117	3.7	116	88	3	600	34	3	29	32	1.74
36516222--36516650	175	2.5	176	89	3	627	34	3	29	32	1.73
36517663--36517707	14	3.1	14	81	15	56	46	2	0	51	1.13
36517663--36517711	16	3.1	16	80	14	57	44	2	0	53	1.12
36517675--36517720	16	2.8	16	83	3	56	39	2	2	56	1.24
36517751--36517793	18	2.6	16	88	7	59	41	2	0	55	1.12
36518503--36518543	17	2.4	18	84	12	59	56	4	0	39	1.21
36524390--36524432	18	2.4	18	92	7	70	55	0	0	44	0.99
36540941--36540982	15	2.8	15	78	10	50	66	0	0	33	0.92
36549020--36549065	21	2.2	21	100	0	92	32	8	30	28	1.87
36552305--36552343	17	2.3	17	90	0	60	46	25	12	15	1.81
36558890--36558942	25	2.1	25	96	0	97	26	20	13	39	1.89
36561952--36562030	38	2.0	38	82	7	95	30	0	16	53	1.44
36561991--36562065	32	2.3	32	86	4	107	30	1	17	50	1.54
36564183--36564227	24	1.9	24	86	4	65	24	20	8	46	1.78
36566326--36566355	7	4.4	7	95	4	53	76	0	10	13	1.01
36566321--36566358	13	2.9	13	85	11	51	71	0	10	18	1.14
36574040--36574226	4	45.8	4	66	22	54	22	4	4	67	1.27
36574049--36574197	10	13.8	10	65	23	54	21	4	4	69	1.26
36574076--36574202	55	2.4	51	81	9	137	22	4	5	67	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36583710--36583769	27	2.1	29	81	6	70	66	0	1	31	1.01
36583738--36583842	18	5.6	18	73	15	72	63	2	6	26	1.33
36583730--36583797	27	2.6	25	80	13	75	69	1	2	26	1.12
36583728--36583795	9	7.8	9	74	9	61	70	1	2	25	1.09
36584044--36584082	19	2.0	19	85	14	53	25	5	10	58	1.51
36584140--36584196	18	3.2	18	80	11	64	36	1	0	61	1.07
36584085--36584199	29	4.1	27	71	14	99	35	0	0	62	1.07
36592732--36592792	32	1.9	32	86	6	88	27	6	9	55	1.57
36593176--36593281	49	2.2	47	83	6	122	31	5	9	53	1.56
36593452--36594313	82	10.5	84	78	9	407	30	11	12	46	1.76
36593452--36594313	84	10.5	84	79	9	430	30	11	12	46	1.76
36593452--36594259	164	4.9	165	75	11	484	29	10	12	47	1.75
36593905--36594255	172	2.0	171	85	4	465	29	11	13	46	1.77
36596543--36596600	21	2.8	21	91	0	89	34	25	13	25	1.93
36596541--36596617	21	3.7	20	83	10	77	32	28	11	27	1.92
36603165--36603354	29	6.5	29	70	13	95	33	27	4	34	1.78
36604390--36604437	24	2.0	24	88	4	71	31	16	6	45	1.72
36615466--36616752	208	6.2	209	83	3	1413	36	18	22	22	1.95
36616596--36616886	134	2.2	134	91	1	458	34	15	27	23	1.95
36616388--36617095	343	2.1	342	85	1	943	35	16	24	23	1.95
36616730--36617316	209	2.8	209	86	1	773	35	17	23	23	1.96
36617622--36617746	17	7.4	17	74	10	96	40	4	3	52	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36617650--36617727	6	12.8	6	70	17	54	44	1	2	51	1.23
36617992--36618303	30	10.5	31	75	13	255	35	26	4	33	1.78
36617992--36618304	59	5.3	60	79	10	265	35	26	4	33	1.78
36618137--36618323	59	3.2	57	80	13	191	35	26	5	32	1.80
36628412--36628450	17	2.4	17	91	4	62	10	10	30	48	1.70
36631820--36632092	84	3.3	80	74	13	203	43	11	13	30	1.80
36643019--36643058	17	2.3	18	80	20	50	30	2	27	40	1.70
36645989--36646093	47	2.2	47	87	1	138	29	14	20	36	1.92
36646497--36646719	39	5.7	39	83	0	176	27	19	17	35	1.94
36646536--36646719	78	2.4	78	82	0	206	27	20	17	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171