genome.fa.s3.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  62  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23665876--23666214	40	7.6	41	65	25	136	34	17	15	32	1.91
23659406--23667127	92	83.8	92	89	1	11586	32	16	16	33	1.92
23666982--23667260	132	2.1	132	94	1	488	32	16	17	34	1.92
23667390--23667545	40	3.6	40	68	24	118	34	16	16	33	1.90
23667114--23687575	92	223.3	92	82	8	17861	32	16	16	33	1.92
23668679--23668833	40	3.6	40	70	23	116	36	17	14	32	1.90
23669877--23670031	40	3.6	41	68	23	111	35	16	15	32	1.90
23670612--23670766	40	3.6	40	70	23	116	36	15	16	32	1.90
23674744--23677269	40	55.6	41	62	25	195	33	16	16	34	1.91
23674744--23675214	224	2.1	223	90	0	735	32	17	16	33	1.92
23678307--23684121	40	127.6	41	62	25	312	32	16	16	34	1.91
23679814--23680284	224	2.1	223	90	0	726	32	17	16	33	1.92
23682003--23682157	39	3.6	39	71	24	134	34	14	14	36	1.88
23683011--23683571	132	4.2	131	72	19	454	33	17	15	33	1.92
23686303--23687199	40	19.4	50	60	28	172	32	16	16	33	1.92
23686995--23687241	40	5.6	41	66	24	128	34	16	15	33	1.90
23687721--23687918	102	2.0	100	85	2	270	12	24	21	41	1.87
23687718--23687946	51	4.5	51	82	5	234	14	24	20	41	1.89
23690921--23690956	17	2.0	19	89	10	58	52	16	13	16	1.74
23694689--23694949	58	4.3	60	80	12	268	35	1	28	34	1.68
23694819--23694921	28	3.5	30	75	11	113	35	0	24	38	1.62
23694695--23694945	125	2.0	124	86	5	346	37	1	27	33	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23694842--23695089	30	8.4	29	70	17	138	37	1	23	37	1.63
23694902--23695089	59	3.2	58	81	9	195	39	1	22	37	1.61
23696967--23697047	28	2.9	27	83	9	99	55	4	1	38	1.29
23696966--23697018	6	9.0	6	78	12	56	52	3	1	41	1.30
23696950--23697014	17	3.8	17	80	8	69	50	3	1	44	1.26
23697004--23697046	17	2.5	18	85	11	63	58	4	0	37	1.19
23696980--23697028	23	2.1	23	84	0	62	55	6	0	38	1.25
23699366--23699457	45	2.1	44	86	6	125	32	34	16	16	1.91
23707788--23707833	24	1.9	24	90	0	74	21	30	17	30	1.96
23709383--23709432	12	4.2	12	79	5	57	20	2	4	74	1.08
23712592--23712666	30	2.5	30	78	8	89	29	20	24	26	1.99
23712646--23712767	36	3.6	35	74	17	103	28	17	23	30	1.97
23712632--23712731	30	3.1	30	73	20	85	29	19	23	29	1.98
23712598--23712781	66	2.8	66	83	5	212	30	17	24	27	1.97
23713797--23713840	18	2.4	19	77	18	56	45	0	0	54	0.99
23715405--23715452	24	2.0	25	87	4	71	54	0	0	45	0.99
23715428--23715485	20	3.0	20	80	14	68	43	0	0	56	0.99
23715429--23715484	18	3.1	18	82	7	60	42	0	0	57	0.99
23715434--23715497	19	3.3	19	80	8	67	39	0	3	57	1.14
23721277--23721351	24	3.1	24	92	0	123	56	9	10	24	1.63
23723584--23723688	42	2.4	43	76	6	106	24	22	31	20	1.98
23723609--23723704	42	2.3	42	80	7	106	25	23	32	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23724693--23724717	10	2.5	10	100	0	50	64	0	0	36	0.94
23725401--23725463	28	2.3	28	86	2	83	61	7	6	23	1.46
23727249--23727327	32	2.5	32	91	0	131	32	7	7	51	1.58
23727703--23727742	11	3.6	11	82	0	53	60	7	12	20	1.56
23730112--23730181	31	2.2	32	75	12	74	57	4	7	31	1.45
23741132--23741648	29	17.5	29	68	14	220	38	2	24	33	1.69
23741102--23741262	59	2.8	57	85	8	200	34	4	26	35	1.76
23741162--23741499	59	5.7	58	80	12	327	37	3	25	33	1.72
23741457--23741617	58	2.7	59	87	3	245	42	0	20	36	1.52
23741598--23741682	30	2.8	31	81	13	88	37	5	24	31	1.79
23743308--23743338	14	2.2	14	94	0	53	16	6	19	58	1.59
23743340--23743425	17	5.3	18	72	22	57	52	4	0	43	1.22
23743341--23743427	29	3.0	28	83	8	88	52	4	0	42	1.21
23744100--23744139	11	3.6	11	82	0	53	60	7	12	20	1.56
23745220--23745443	43	5.3	42	86	2	286	29	25	19	25	1.98
23745220--23745425	85	2.4	85	87	1	288	28	24	20	26	1.99
23749000--23749421	41	10.3	41	83	5	473	16	29	20	32	1.95
23777522--23778047	42	12.5	42	86	2	617	33	29	13	23	1.93
23777598--23778105	42	12.2	41	83	6	237	33	28	13	24	1.93
23784960--23785001	14	2.9	14	86	10	50	69	0	0	30	0.89
23785194--23785307	40	2.8	40	87	0	165	37	18	23	20	1.94
23785194--23785337	40	3.5	40	84	3	146	38	18	25	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23785315--23785479	81	2.0	81	81	2	188	42	16	21	19	1.89
23785274--23785512	41	5.8	40	75	9	173	40	17	23	19	1.91
23788197--23788231	18	1.9	18	94	0	61	40	17	14	28	1.88
23795235--23795296	19	3.5	19	77	16	62	70	0	24	4	1.06
23798389--23798437	20	2.5	20	89	0	71	30	0	6	63	1.19
23798424--23798463	19	2.0	20	85	4	55	52	0	2	45	1.14
23798541--23798592	22	2.4	22	81	12	63	30	0	5	63	1.18
23822577--23822603	4	6.8	4	100	0	54	48	25	0	25	1.52
23829341--23829374	16	2.1	16	89	10	52	70	2	0	26	1.01
23830336--23830391	25	2.2	25	78	6	60	46	3	1	48	1.30
23837800--23837952	56	2.7	57	78	3	159	28	16	11	43	1.83
23837862--23838044	91	2.0	92	89	3	280	28	16	10	44	1.81
23837918--23837987	35	2.0	35	88	0	104	22	20	14	42	1.88
23837954--23838138	57	3.3	56	82	8	223	28	15	10	44	1.80
23837808--23838108	148	2.0	147	87	3	426	27	17	10	43	1.83
23837953--23838177	113	2.0	113	84	1	299	29	19	10	40	1.85
23837953--23838177	57	4.0	56	79	6	222	29	19	10	40	1.85
23838368--23838534	57	2.9	57	83	6	189	44	5	17	31	1.73
23838633--23838672	21	1.9	21	90	10	64	47	0	5	47	1.24
23843563--23843608	20	2.3	20	85	7	58	41	4	8	45	1.55
23846901--23846950	23	2.2	23	85	7	66	2	18	4	76	1.04
23852126--23852169	23	2.0	21	83	12	54	45	4	2	47	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23852812--23852850	20	1.9	21	85	15	55	53	0	7	38	1.30
23854330--23854373	18	2.5	17	81	7	52	29	18	4	47	1.68
23867938--23868006	32	2.2	32	84	5	86	46	4	4	44	1.43
23874515--23874562	14	3.3	14	78	16	53	52	4	0	43	1.20
23874517--23874564	16	3.2	15	80	8	62	52	4	0	43	1.20
23878203--23878250	3	16.0	3	100	0	96	66	0	0	33	0.92
23893589--23893637	22	2.2	22	85	7	64	10	10	10	69	1.37
23893631--23893678	22	2.2	22	84	0	60	20	12	8	58	1.60
23894506--23894555	26	1.9	26	84	8	66	62	0	2	36	1.07
23901461--23901487	2	13.5	2	100	0	54	48	0	0	51	1.00
23901833--23901888	24	2.3	23	72	6	58	58	3	3	33	1.32
23902086--23902123	17	2.3	16	83	16	51	57	0	2	39	1.12
23902718--23902814	30	3.2	30	73	4	97	52	4	0	43	1.20
23902682--23902816	60	2.2	60	83	7	166	47	8	0	42	1.40
23909666--23909802	69	2.0	69	94	0	238	32	12	21	33	1.90
23910479--23910544	31	2.1	31	81	10	73	45	15	4	34	1.66
23910500--23910559	31	1.9	31	90	6	95	38	15	5	41	1.68
23918785--23918821	19	1.9	19	88	0	56	40	2	16	40	1.62
23939896--23939939	22	2.0	22	86	4	61	18	11	9	61	1.55
23946524--23946569	2	23.0	2	100	0	92	50	0	0	50	1.00
23961096--23961126	6	5.2	6	92	0	53	48	48	0	3	1.17
23969295--23969333	20	2.0	20	84	0	51	30	2	2	64	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23970208--23970247	21	2.0	20	85	5	53	22	22	0	55	1.44
23980663--23980692	14	2.1	14	93	0	51	50	0	3	46	1.18
23988836--23988864	7	4.1	7	100	0	58	13	0	58	27	1.36
23993157--23993194	6	6.3	6	87	0	58	34	5	18	42	1.73
23993157--23993194	12	3.2	12	96	0	67	34	5	18	42	1.73
23993195--23993233	19	2.1	19	85	0	51	23	2	23	51	1.61
24000197--24000265	31	2.2	31	82	10	88	37	15	5	40	1.72
24001303--24001382	29	2.7	29	84	5	88	31	7	12	48	1.68
24001303--24001391	29	3.0	29	81	8	81	31	8	12	47	1.72
24007872--24007913	20	2.0	21	86	4	59	35	19	0	45	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171