genome.fa.s3.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  36  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16328034--16328064	14	2.2	14	94	0	53	29	0	0	70	0.87
16328027--16328064	14	2.5	15	83	12	51	28	0	0	71	0.87
16341366--16341412	20	2.3	20	82	10	60	36	2	2	59	1.21
16348286--16348347	23	2.7	23	77	2	72	50	1	3	45	1.27
16357644--16357737	40	2.5	37	73	15	84	23	23	25	27	2.00
16361527--16361716	52	3.7	52	86	0	263	34	21	13	30	1.92
16372671--16372722	25	2.1	25	96	0	95	42	28	3	25	1.72
16372847--16372909	24	2.6	24	82	0	81	50	9	12	26	1.71
16374833--16374895	24	2.6	24	87	0	90	49	11	14	25	1.76
16384991--16385062	35	2.1	35	94	0	126	23	16	8	51	1.71
16386963--16387016	16	3.2	17	85	10	67	40	5	5	48	1.50
16387227--16387265	20	1.9	21	89	5	62	58	0	0	41	0.98
16387317--16387356	3	13.3	3	100	0	80	67	0	0	32	0.91
16391020--16391064	19	2.3	18	82	14	54	22	8	0	68	1.16
16395285--16395603	174	1.8	174	93	1	550	15	24	14	45	1.83
16395285--16395616	87	3.8	87	88	2	488	15	25	14	45	1.83
16404237--16404518	138	2.0	140	85	2	381	39	16	14	30	1.88
16408748--16408778	15	2.1	15	100	0	62	25	12	22	38	1.90
16409755--16409784	2	15.5	2	93	6	53	50	0	0	50	1.00
16409758--16409800	14	2.9	14	86	6	50	53	2	0	44	1.13
16410105--16410173	29	2.4	28	81	13	77	62	0	1	36	1.04
16410102--16410171	15	4.9	15	68	18	51	60	0	1	38	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16411424--16411476	7	7.7	7	77	12	56	30	0	26	43	1.55
16411425--16411466	20	2.1	20	90	0	66	28	0	28	42	1.56
16427408--16427449	14	3.0	14	76	10	50	33	0	0	66	0.92
16427967--16428013	12	3.8	12	80	2	58	46	2	14	36	1.57
16428743--16428775	15	2.2	15	100	0	66	12	6	18	63	1.48
16437751--16437846	47	2.0	47	95	0	174	47	10	5	36	1.60
16440046--16440084	21	1.9	20	84	5	51	25	15	7	51	1.70
16446797--16446855	24	2.5	23	81	10	66	25	1	5	67	1.20
16447945--16447985	6	6.8	6	97	0	73	53	12	34	0	1.38
16451461--16451791	71	4.6	70	75	10	258	47	12	5	34	1.65
16451460--16451793	143	2.3	145	79	7	349	47	12	5	34	1.66
16451968--16452768	71	11.2	71	76	8	599	47	13	6	32	1.69
16451968--16452768	143	5.6	142	80	7	809	47	13	6	32	1.69
16451985--16452593	213	2.8	212	88	2	853	46	13	6	32	1.69
16452668--16452869	109	1.8	109	87	5	300	44	12	7	36	1.70
16459652--16459689	2	19.0	2	100	0	76	50	0	0	50	1.00
16461387--16461462	21	3.6	21	75	17	61	35	1	2	60	1.19
16467115--16467147	15	2.2	15	89	10	50	54	0	3	42	1.15
16477532--16477577	24	1.9	24	82	8	58	23	15	19	41	1.89
16489777--16489805	13	2.1	14	93	6	51	75	0	0	24	0.80
16489925--16489968	21	2.0	23	86	8	65	38	4	11	45	1.61
16494886--16494919	17	1.9	18	88	5	52	70	14	14	0	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16497458--16497519	3	20.0	3	77	12	63	1	32	3	62	1.20
16516127--16516158	3	10.7	3	93	0	55	71	0	28	0	0.86
16520997--16521125	55	2.3	55	89	4	197	29	17	17	35	1.93
16523625--16523839	61	3.5	61	82	4	283	27	20	16	35	1.94
16524933--16524986	24	2.2	24	90	0	81	5	24	31	38	1.78
16525225--16525393	57	2.8	61	83	12	188	34	11	19	34	1.88
16526427--16526508	44	1.9	44	85	9	116	63	3	1	31	1.19
16526874--16526916	20	2.2	20	87	4	61	34	2	9	53	1.46
16536233--16536348	49	2.4	49	77	12	132	42	28	5	24	1.76
16536477--16536530	29	2.0	26	85	10	72	46	0	7	46	1.31
16540998--16541081	36	2.4	35	82	9	91	41	29	1	27	1.63
16552333--16552396	29	2.2	29	83	8	76	48	3	1	46	1.27
16553829--16553872	22	2.0	22	87	12	65	52	0	6	40	1.28
16553844--16553899	27	2.1	27	82	0	67	57	0	1	41	1.09
16555218--16555243	4	6.5	4	100	0	52	23	0	23	53	1.46
16560009--16560060	18	2.9	18	94	0	86	40	59	0	0	0.97
16560012--16560060	6	8.2	6	93	0	71	38	61	0	0	0.96
16572147--16572258	58	1.9	58	89	7	174	51	0	0	46	1.13
16572147--16572274	58	2.2	57	85	9	154	52	1	0	45	1.15
16589682--16589723	20	2.3	19	84	12	52	35	0	4	59	1.19
16590851--16590904	26	2.0	28	85	7	76	48	3	14	33	1.62
16593288--16593368	40	2.0	42	90	4	130	39	16	14	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16595217--16595247	9	3.4	9	95	0	53	0	25	9	64	1.24
16596703--16596748	2	23.0	2	100	0	92	50	0	0	50	1.00
16597984--16598028	2	23.0	2	95	4	83	51	0	0	48	1.00
16602803--16604027	86	14.3	85	76	4	890	23	18	22	35	1.95
16602815--16604027	43	28.4	42	74	6	671	23	17	22	35	1.95
16607628--16608959	43	31.2	43	72	10	358	24	18	21	34	1.96
16607627--16608959	86	15.6	87	73	7	591	24	18	21	34	1.96
16607869--16608174	126	2.4	127	79	5	309	26	20	19	32	1.97
16607627--16608959	129	10.4	129	74	7	503	24	18	21	34	1.96
16608974--16609663	43	16.4	43	73	9	291	21	19	24	34	1.96
16609106--16609392	127	2.3	125	80	5	301	19	19	24	36	1.95
16609153--16609391	82	2.8	84	81	6	238	19	19	25	35	1.95
16609355--16609557	84	2.4	81	77	6	210	20	19	26	34	1.96
16609899--16610112	41	5.2	40	76	12	139	23	20	21	35	1.96
16609972--16612511	43	60.2	42	68	13	639	23	14	21	40	1.90
16609899--16610165	125	2.1	125	80	10	289	24	18	20	36	1.95
16609972--16612526	86	30.3	86	68	11	813	23	14	21	40	1.90
16611332--16611743	206	2.0	209	82	6	505	23	14	23	38	1.92
16611629--16611745	44	2.7	45	74	5	123	22	16	24	36	1.94
16611708--16612089	174	2.2	174	88	0	559	23	14	22	39	1.91
16612549--16613099	43	12.9	43	73	6	253	23	13	22	40	1.89
16612627--16612838	88	2.4	88	79	6	216	25	14	22	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16612935--16613070	42	3.3	39	72	15	105	24	11	22	41	1.87
16613091--16613135	23	2.0	23	86	0	63	17	11	31	40	1.85
16613053--16613179	66	1.9	66	83	3	166	18	13	28	39	1.89
16613114--16614777	43	38.7	43	76	3	1236	22	13	23	40	1.90
16631858--16632036	74	2.5	70	90	4	270	35	13	12	37	1.84
16632222--16632300	31	2.5	31	91	0	131	39	24	7	29	1.82
16632641--16632695	27	2.0	27	96	0	101	45	0	23	30	1.53
16633407--16633483	36	2.1	36	87	0	109	15	7	7	68	1.36
16639911--16639945	14	2.5	14	90	0	52	85	5	8	0	0.73
16647671--16647701	14	2.2	14	94	0	53	51	0	0	48	1.00
16647828--16647878	15	3.5	15	71	15	52	54	11	7	25	1.63
16651058--16651087	15	2.0	15	93	0	51	73	10	16	0	1.09
16655603--16655677	12	6.2	12	73	6	62	70	17	4	8	1.27
16655603--16655692	24	3.7	23	75	11	74	71	15	4	8	1.28
16655656--16655704	21	2.4	20	80	6	62	69	18	4	8	1.30
16655662--16655791	21	5.8	21	68	20	75	66	20	5	7	1.36
16655703--16655735	17	1.9	17	93	0	57	72	12	3	12	1.23
16655686--16655756	29	2.5	28	79	9	72	67	19	4	8	1.34
16658182--16658226	24	1.9	23	90	4	72	37	20	2	40	1.65
16673488--16673546	21	2.7	22	80	15	61	49	6	1	42	1.39
16676474--16676535	27	2.3	27	100	0	124	9	25	41	22	1.84
16676490--16676553	27	2.4	27	83	0	74	17	32	35	14	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16677504--16677536	16	2.0	17	94	5	59	42	0	0	57	0.98
16679504--16679551	6	8.0	6	95	0	87	16	31	33	18	1.94
16679985--16680031	6	7.8	6	86	9	69	17	2	14	65	1.36
16680104--16680161	26	2.2	26	81	0	71	58	3	1	36	1.25
16683456--16683509	27	2.0	27	85	7	74	18	29	31	20	1.96
16686393--16686462	29	2.3	29	75	4	68	31	8	12	47	1.72
16686646--16686724	31	2.6	31	80	11	92	50	8	1	39	1.42
16686978--16687002	11	2.3	11	100	0	50	68	0	8	24	1.16
16687588--16687626	19	2.1	19	90	0	60	58	7	0	33	1.26
16687640--16687692	10	5.6	9	80	14	54	71	0	1	26	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171