genome.fa.s3.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  107  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34428552--34428919	200	1.8	200	88	2	569	39	19	19	21	1.92
34428896--34428988	48	1.9	48	82	0	114	41	13	21	22	1.88
34429777--34429967	30	6.4	30	72	8	138	32	19	5	41	1.74
34429768--34429926	61	2.6	60	83	3	176	34	16	6	42	1.75
34429768--34429926	30	5.3	30	77	3	140	34	16	6	42	1.75
34434365--34434466	40	2.5	40	85	3	134	32	22	22	22	1.98
34438715--34438753	19	2.1	19	85	9	53	53	0	0	46	1.00
34438937--34438978	20	2.0	21	90	4	68	52	4	7	35	1.50
34441190--34441216	8	3.4	8	100	0	54	37	0	62	0	0.95
34442972--34443044	31	2.4	31	82	13	80	31	8	2	57	1.42
34444969--34445027	31	1.9	31	92	0	100	28	10	10	50	1.68
34452828--34452867	18	2.2	18	86	8	55	30	0	0	70	0.88
34454308--34454341	15	2.2	16	89	5	52	47	2	0	50	1.16
34455189--34455236	22	2.2	22	84	0	60	66	16	6	10	1.41
34455154--34455281	34	3.8	33	82	4	121	65	21	6	7	1.39
34455200--34455293	11	8.5	11	72	9	66	63	25	6	4	1.36
34455623--34455688	31	2.1	31	85	0	87	33	10	12	43	1.76
34458159--34458201	22	2.0	22	86	9	61	23	2	2	72	1.08
34458332--34458395	21	3.2	20	77	18	71	70	4	1	23	1.15
34458335--34458386	17	3.1	17	83	8	61	71	1	1	25	1.07
34459414--34459503	30	3.0	29	82	6	108	38	24	5	31	1.78
34459662--34459730	37	1.9	35	82	5	84	28	4	7	59	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34462588--34462617	15	1.9	16	93	6	53	40	6	26	26	1.81
34473025--34473235	79	2.8	72	80	9	251	33	26	18	21	1.96
34473096--34473246	39	3.8	39	76	6	142	32	26	17	23	1.96
34473349--34473462	51	2.3	50	82	10	126	35	14	23	26	1.94
34474320--34474362	5	8.8	5	82	5	52	74	4	20	0	1.00
34480999--34481223	112	2.0	111	88	0	333	29	18	12	39	1.88
34481613--34481939	98	3.4	97	82	2	370	37	15	24	22	1.93
34481650--34481889	49	4.9	49	70	5	162	38	14	25	22	1.92
34481782--34481938	49	3.2	48	75	11	133	36	15	24	22	1.94
34482130--34482554	40	10.9	38	70	13	202	31	25	18	24	1.98
34482114--34482571	78	5.9	78	87	2	598	31	24	18	25	1.98
34482538--34482795	138	1.9	135	85	5	358	34	25	15	25	1.94
34482460--34482814	46	8.1	46	80	8	316	33	25	16	24	1.95
34483541--34483594	27	2.0	27	81	0	63	77	11	11	0	0.99
34484876--34484929	21	2.5	21	82	11	56	18	7	14	59	1.58
34486937--34487014	30	2.6	30	83	0	102	38	19	6	35	1.77
34488618--34488671	27	2.0	27	85	0	72	51	1	0	46	1.11
34488633--34488665	17	2.1	17	88	11	52	51	3	0	45	1.16
34508054--34508174	46	2.6	47	80	4	118	24	21	22	31	1.98
34510518--34510774	135	1.9	135	91	3	419	31	11	12	44	1.78
34512956--34513125	58	3.0	55	77	13	141	40	0	2	56	1.16
34512981--34513133	58	2.7	55	75	12	157	40	1	2	55	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34520527--34520556	2	15.0	2	92	0	51	53	46	0	0	1.00
34526895--34526947	15	3.4	15	75	10	52	32	0	5	62	1.19
34526896--34526946	16	3.2	16	75	8	50	29	0	5	64	1.17
34531989--34532026	19	2.0	19	85	10	51	47	2	0	50	1.15
34533261--34533307	24	2.0	23	84	12	60	40	10	4	44	1.59
34533342--34533396	25	2.2	25	83	3	76	58	0	3	38	1.16
34538170--34538201	16	2.0	16	100	0	64	25	31	6	37	1.81
34538686--34538740	21	2.6	21	75	16	60	41	0	3	54	1.18
34539956--34540000	21	2.1	22	83	4	56	62	4	0	33	1.15
34544963--34545060	31	3.2	30	67	25	80	20	15	15	48	1.80
34544931--34545089	60	2.7	60	80	6	198	24	13	11	49	1.76
34545281--34545359	30	2.6	31	89	2	115	49	8	11	30	1.69
34545859--34545896	20	1.9	20	88	0	58	34	0	5	60	1.19
34555160--34555208	22	2.1	22	81	7	53	51	18	0	30	1.47
34555394--34555520	50	2.6	49	85	1	155	30	22	12	34	1.91
34557103--34557149	20	2.3	20	81	0	58	29	8	31	29	1.87
34560159--34560205	20	2.3	20	88	0	67	25	8	34	31	1.86
34565735--34565771	18	2.1	18	90	5	58	13	27	13	45	1.81
34568588--34568659	29	2.5	28	84	8	99	51	25	15	8	1.71
34569222--34569298	27	2.9	27	90	5	104	20	9	28	41	1.83
34569239--34569298	27	2.2	27	100	0	120	20	10	28	41	1.84
34576604--34576652	17	3.0	16	79	5	53	24	18	8	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34576617--34576652	17	2.1	17	89	0	54	25	16	8	50	1.73
34577550--34577743	50	3.9	50	80	3	221	28	22	17	31	1.96
34579642--34579687	24	1.9	24	86	0	65	28	26	21	23	1.99
34579676--34579743	27	2.5	27	90	2	100	38	22	16	23	1.93
34584641--34584707	33	2.0	33	100	0	134	44	14	17	22	1.86
34585835--34585922	30	2.9	30	79	3	97	17	10	28	44	1.81
34587839--34587871	2	16.5	2	100	0	66	51	0	0	48	1.00
34601145--34601879	224	3.3	221	90	1	1130	35	18	7	38	1.78
34601743--34601983	95	2.6	94	77	7	240	34	17	9	38	1.82
34602462--34602514	15	3.6	14	80	14	52	69	0	1	28	0.99
34602462--34602512	18	3.1	16	76	17	52	70	0	1	27	0.98
34602907--34603019	58	1.9	58	85	3	156	41	2	13	42	1.58
34603918--34604265	169	2.0	173	91	5	569	38	7	10	43	1.67
34610649--34610690	14	3.0	14	76	10	50	66	4	9	19	1.38
34610797--34610876	39	2.1	39	92	0	133	32	1	28	37	1.65
34610859--34611128	58	4.6	57	74	11	215	35	4	25	35	1.76
34610880--34611125	88	2.8	87	78	5	246	36	4	24	34	1.77
34610837--34611200	30	12.5	30	76	9	238	35	3	26	34	1.75
34612269--34612321	3	16.7	3	84	11	70	32	0	1	66	1.03
34613012--34613083	6	12.8	6	73	14	64	55	1	1	41	1.17
34613019--34613083	16	4.0	16	86	4	78	56	1	1	40	1.18
34613019--34613085	17	4.1	17	84	5	93	56	1	1	40	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34613941--34613991	16	3.0	17	82	8	59	0	23	0	76	0.79
34613947--34613985	7	5.3	7	88	11	60	0	17	0	82	0.68
34613942--34613985	14	2.9	15	90	10	63	0	22	0	77	0.77
34618737--34618778	14	3.0	14	76	10	50	66	4	9	19	1.38
34618889--34619018	29	4.5	28	76	15	106	39	3	23	34	1.70
34618906--34619113	29	7.2	29	77	11	180	36	1	25	37	1.67
34618889--34619018	57	2.2	58	89	2	199	39	3	23	34	1.70
34618908--34619275	58	6.3	58	77	10	245	35	2	26	34	1.72
34619012--34619202	29	6.6	29	77	10	185	35	3	27	34	1.73
34619012--34619205	58	3.4	57	87	6	268	35	3	27	34	1.73
34619012--34619231	30	7.6	30	75	10	161	35	3	26	34	1.73
34618897--34619253	30	12.3	30	74	14	144	36	3	26	33	1.73
34621064--34621130	6	11.8	6	70	12	52	55	2	1	40	1.24
34621071--34621129	17	3.6	16	81	4	73	55	3	1	38	1.26
34621062--34621136	11	6.7	11	74	8	62	57	2	1	38	1.21
34621078--34621153	34	2.3	32	88	8	109	59	2	1	36	1.20
34621084--34621146	17	4.0	15	82	10	56	60	3	1	34	1.22
34622725--34622754	16	1.9	16	93	6	53	80	3	16	0	0.85
34623714--34624018	98	3.1	97	81	5	346	35	17	27	20	1.94
34623720--34624019	49	6.1	48	79	5	298	35	17	27	20	1.95
34623767--34624061	146	2.0	147	82	4	355	35	16	27	20	1.94
34624307--34624503	96	2.1	96	93	0	331	32	18	27	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34624420--34625070	114	5.7	114	87	0	888	33	17	25	22	1.96
34625506--34625539	11	3.0	11	87	8	50	50	29	0	20	1.49
34633497--34633567	22	3.0	23	76	17	74	42	0	1	56	1.08
34635624--34635692	31	2.3	31	97	2	131	44	5	14	34	1.69
34637031--34637144	42	2.7	43	90	1	167	16	14	40	28	1.88
34637145--34637279	53	2.5	53	81	2	146	21	13	37	28	1.91
34637806--34637915	40	2.8	40	87	0	166	36	20	20	23	1.95
34638000--34638143	29	5.0	29	86	3	146	22	15	18	43	1.87
34638003--34638148	58	2.5	58	83	4	170	22	15	19	42	1.89
34638125--34638158	12	2.8	12	90	0	50	17	11	23	47	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171