genome.fa.s3.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  39  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17405447--17405617	23	7.3	23	79	6	191	39	23	25	11	1.89
17405447--17405617	46	3.6	47	85	7	249	39	23	25	11	1.89
17405447--17405638	94	2.0	94	97	0	366	39	22	26	11	1.88
17405447--17405638	71	2.7	71	77	13	209	39	22	26	11	1.88
17405458--17405638	23	7.7	22	77	11	155	38	22	27	12	1.90
17411918--17411994	23	3.3	23	87	3	109	40	23	24	11	1.88
17411918--17412015	46	2.1	47	83	11	121	39	22	26	11	1.87
17411918--17412015	48	2.1	46	84	7	126	39	22	26	11	1.87
17411929--17412015	23	3.7	22	79	11	84	37	21	27	12	1.90
17413898--17413931	17	2.1	16	88	5	50	52	0	2	44	1.16
17414122--17414150	3	9.7	3	100	0	58	65	0	0	34	0.93
17424729--17424762	16	2.1	17	88	5	52	41	2	0	55	1.15
17428744--17428774	15	2.1	15	100	0	62	45	6	12	35	1.68
17428968--17429030	23	2.7	23	82	9	74	52	1	1	44	1.20
17431070--17431163	49	1.9	49	82	8	120	46	8	13	30	1.73
17433452--17433496	19	2.4	19	100	0	90	57	4	17	20	1.56
17437830--17437873	23	1.9	23	86	9	63	13	36	13	36	1.85
17440906--17440964	31	2.0	29	83	6	73	30	5	16	47	1.69
17441150--17441208	31	2.0	30	83	6	75	49	13	3	33	1.59
17443856--17443889	16	2.1	16	100	0	68	44	5	0	50	1.26
17445892--17445920	15	1.9	15	100	0	58	79	0	0	20	0.74
17447108--17447154	3	15.7	3	100	0	94	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17449102--17449141	16	2.5	17	84	12	57	60	0	0	40	0.97
17472103--17472160	29	2.0	29	93	0	98	43	1	1	53	1.21
17473630--17473917	30	9.8	29	77	6	233	36	23	2	37	1.67
17473630--17473836	89	2.3	90	89	3	303	37	25	1	35	1.65
17473630--17473883	59	4.3	60	79	4	246	37	24	1	37	1.65
17473630--17473883	89	2.9	87	82	4	301	37	24	1	37	1.65
17479049--17479100	6	8.7	6	100	0	104	0	67	0	32	0.91
17485877--17485909	17	1.9	17	93	0	57	39	21	18	21	1.93
17490420--17490467	19	2.6	18	81	12	53	77	4	6	12	1.11
17502835--17502866	5	6.8	5	92	7	50	0	0	15	84	0.63
17504676--17504745	27	2.7	24	71	23	68	32	0	2	64	1.08
17504676--17504749	30	2.7	27	73	16	73	33	0	2	63	1.09
17504866--17505047	98	1.9	98	85	2	258	34	16	13	35	1.87
17509844--17509909	28	2.5	24	81	13	69	57	0	1	40	1.08
17510339--17510377	19	2.0	20	85	14	55	33	5	20	41	1.74
17511439--17511484	17	2.8	16	83	6	56	50	15	6	28	1.69
17511439--17511484	16	2.8	17	83	6	58	50	15	6	28	1.69
17512593--17512661	27	2.6	27	93	2	113	50	4	4	40	1.42
17513505--17513529	3	8.3	3	100	0	50	36	64	0	0	0.94
17515507--17515550	23	1.9	23	90	0	70	75	0	2	22	0.92
17515829--17515877	20	2.5	20	96	3	91	44	6	4	44	1.47
17522039--17522093	27	2.0	27	100	0	110	18	21	18	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17530478--17530517	20	2.0	20	85	5	53	72	0	22	5	1.04
17545985--17546105	61	2.0	61	85	6	165	38	7	4	50	1.50
17548301--17548365	22	2.8	22	80	13	69	30	1	1	66	1.10
17548313--17548354	17	2.4	18	76	11	52	33	2	2	61	1.21
17548304--17548365	25	2.7	22	78	16	72	32	1	1	64	1.13
17548428--17548472	23	2.0	23	82	8	56	60	4	2	33	1.29
17559202--17559252	20	2.7	18	75	19	50	23	1	0	74	0.92
17560287--17560321	14	2.5	14	90	0	52	65	0	2	31	1.07
17568342--17568378	17	2.2	17	90	9	58	64	5	0	29	1.15
17575555--17575583	6	4.8	6	100	0	58	34	0	17	48	1.47
17577372--17577410	16	2.4	16	91	0	69	43	0	0	56	0.99
17577358--17577410	17	2.9	19	75	18	58	47	0	0	52	1.00
17577360--17577410	16	2.8	18	80	17	61	45	0	0	54	0.99
17580236--17580279	2	22.0	2	100	0	88	50	0	50	0	1.00
17582772--17582810	14	2.8	13	88	7	51	71	2	0	25	0.98
17583137--17583175	20	2.0	19	85	5	51	38	10	2	48	1.51
17583729--17583787	21	3.1	19	77	18	52	38	1	1	57	1.19
17584850--17584935	33	2.6	33	83	3	93	65	9	8	17	1.46
17584886--17584933	22	2.2	22	84	0	60	72	8	6	12	1.26
17586772--17586800	14	2.1	14	100	0	58	24	27	34	13	1.93
17587381--17587603	29	7.7	29	78	6	200	34	28	5	31	1.80
17587412--17587603	58	3.3	58	78	5	226	33	29	5	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17587441--17587600	88	1.8	87	86	1	230	34	26	5	33	1.80
17587582--17587649	29	2.3	30	87	7	95	35	26	5	32	1.81
17596451--17596497	16	2.9	16	72	15	51	29	0	2	68	1.02
17609817--17609850	3	11.3	3	100	0	68	0	32	0	67	0.91
17610422--17610472	22	2.3	20	78	18	57	76	9	7	5	1.15
17612352--17612377	2	13.0	2	100	0	52	50	0	0	50	1.00
17619383--17619423	13	3.2	13	86	6	57	56	7	0	36	1.27
17625500--17625532	17	2.0	16	94	5	57	69	0	30	0	0.88
17629893--17629968	35	2.2	34	80	2	80	31	0	6	61	1.21
17631559--17631592	18	1.9	17	88	5	50	32	29	8	29	1.87
17637491--17637548	3	19.3	3	85	0	53	8	37	0	53	1.32
17637493--17637568	15	4.8	15	71	14	55	10	38	0	51	1.37
17637493--17637551	21	2.8	21	86	0	82	10	37	0	52	1.35
17648023--17648070	17	2.9	16	78	6	51	64	0	0	35	0.94
17654681--17654710	6	5.2	6	92	8	53	0	70	0	30	0.88
17655895--17655982	32	2.8	31	71	25	76	43	5	2	48	1.39
17665299--17665360	16	3.6	16	75	21	63	50	9	0	40	1.35
17667248--17667278	4	7.8	4	92	0	53	54	25	0	19	1.44
17667248--17667278	16	1.9	16	100	0	62	54	25	0	19	1.44
17673809--17673834	3	8.7	3	100	0	52	0	69	0	30	0.89
17675899--17676098	101	2.0	101	82	2	240	29	13	21	36	1.91
17681054--17681094	20	2.0	20	90	0	64	46	2	0	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17682251--17682285	6	5.8	6	100	0	70	0	65	0	34	0.93
17684527--17684564	18	2.2	17	90	4	58	31	13	5	50	1.63
17684557--17684590	17	2.0	17	100	0	68	29	35	11	23	1.90
17688443--17688491	16	3.1	15	77	13	53	30	0	2	67	1.02
17693382--17693412	2	15.5	2	93	0	53	48	0	3	48	1.17
17694572--17694805	81	2.9	80	83	6	278	23	21	24	29	1.99
17700877--17700985	29	3.7	29	81	6	130	32	3	25	38	1.74
17700982--17701167	29	6.4	29	68	14	116	30	26	6	36	1.83
17700982--17701167	58	3.2	57	74	8	153	30	26	6	36	1.83
17706138--17706172	15	2.3	15	95	0	61	85	0	14	0	0.59
17707058--17707174	39	2.9	38	86	6	153	78	0	17	4	0.90
17707060--17707174	44	2.6	44	81	11	155	79	0	17	3	0.87
17707060--17707175	5	22.0	5	76	20	89	78	0	18	3	0.89
17708674--17708816	39	3.7	39	71	3	135	22	27	23	26	1.99
17708652--17708833	78	2.3	78	93	0	301	24	29	20	25	1.99
17708923--17709764	209	4.0	209	87	1	1100	37	18	21	21	1.94
17710072--17710148	6	13.0	6	71	13	52	42	2	6	48	1.42
17710093--17710149	29	1.9	30	85	3	80	45	3	5	45	1.43
17710760--17710791	17	1.9	17	93	6	57	34	12	0	53	1.39
17711887--17712118	29	7.9	29	80	9	215	37	25	2	34	1.70
17711891--17712118	30	7.8	29	80	8	212	38	24	2	34	1.70
17711891--17712120	59	3.9	59	81	6	261	38	24	3	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17711989--17712272	59	4.8	59	75	10	172	34	23	5	36	1.78
17711941--17712327	117	3.3	114	76	9	264	34	23	5	36	1.78
17728290--17728421	31	4.5	28	68	23	76	34	1	27	36	1.66
17728143--17728438	118	2.6	113	83	7	364	35	3	27	33	1.73
17728308--17728401	30	3.2	31	72	18	92	38	2	25	34	1.68
17728250--17728411	30	5.5	31	65	21	78	37	3	24	33	1.73
17728143--17728424	59	4.9	58	81	6	313	35	3	28	33	1.73
17729177--17729209	15	2.2	15	94	0	57	48	18	15	18	1.81
17730485--17730547	16	3.8	17	75	6	67	53	4	1	39	1.31
17730468--17730546	33	2.5	32	79	6	79	50	5	2	41	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171