genome.fa.s3.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  161  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47844252--47844297	24	2.0	23	82	4	56	8	19	2	69	1.25
47845379--47845463	6	15.0	6	72	20	76	51	1	2	44	1.21
47845379--47845457	17	4.7	16	84	10	104	51	1	2	44	1.23
47845379--47845463	11	7.5	11	71	10	64	51	1	2	44	1.21
47845720--47846724	92	11.0	92	94	0	1746	32	18	16	32	1.93
47863461--47863491	15	2.1	15	93	0	53	25	22	25	25	2.00
47872170--47872211	19	2.2	20	83	12	52	26	2	2	69	1.13
47874011--47874051	18	2.2	20	86	8	59	26	4	0	68	1.10
47875733--47875758	6	4.3	6	100	0	52	50	0	0	50	1.00
47883828--47883885	23	2.5	23	88	5	82	29	25	22	22	1.99
47887916--47887961	22	2.1	21	84	4	56	47	2	2	47	1.26
47912366--47912723	84	4.3	84	78	5	284	46	10	12	30	1.75
47912928--47913037	50	2.2	49	79	7	116	55	11	1	30	1.46
47916973--47917025	26	2.0	26	100	0	106	24	11	22	41	1.86
47919893--47920437	59	9.2	59	87	3	776	35	3	28	32	1.73
47919893--47920437	117	4.6	117	90	2	824	35	3	28	32	1.73
47921065--47921094	11	2.7	11	94	0	51	23	53	13	10	1.69
47922286--47922338	11	5.0	11	72	9	56	58	0	3	37	1.16
47929350--47929408	28	2.1	28	81	12	68	45	6	8	38	1.61
47930365--47930400	16	2.2	17	90	5	56	61	5	0	33	1.19
47934304--47934427	49	2.5	49	92	0	176	29	13	14	42	1.84
47936219--47936248	15	2.0	15	100	0	60	33	13	20	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47939655--47939722	23	3.0	23	91	0	118	44	22	19	14	1.86
47941879--47942087	33	6.2	33	69	9	125	28	24	15	31	1.96
47948318--47948376	18	3.3	18	67	11	50	47	1	13	37	1.53
47948429--47948469	16	2.5	16	84	4	55	34	0	2	63	1.08
47948524--47948554	16	2.0	16	93	6	55	67	0	0	32	0.91
47949000--47949031	2	16.0	2	100	0	64	50	0	0	50	1.00
47958831--47958958	56	2.3	56	82	4	152	26	26	20	26	1.99
47959172--47959791	198	3.1	197	86	2	868	33	14	10	40	1.81
47960563--47960609	24	2.0	24	83	8	60	51	6	6	36	1.53
47960658--47960704	24	2.0	24	83	8	60	51	6	6	36	1.53
47960548--47960742	95	2.1	95	99	0	381	39	8	10	42	1.69
47960977--47961007	16	1.9	16	100	0	62	58	3	6	32	1.40
47961346--47961426	20	4.3	18	71	20	60	66	2	0	30	1.05
47961346--47961427	18	4.4	19	71	14	55	65	2	0	31	1.05
47961322--47961410	38	2.3	39	84	7	121	61	4	1	32	1.23
47961322--47961426	37	2.8	37	81	11	92	63	3	0	31	1.18
47961357--47961435	10	8.2	10	68	14	51	64	2	0	32	1.07
47962689--47962736	19	2.6	17	75	18	51	43	4	0	52	1.20
47965798--47965857	25	2.5	24	83	5	77	16	8	13	61	1.55
47995219--47995263	24	1.9	23	90	4	72	46	4	0	48	1.22
48004468--48004506	20	2.0	19	90	5	60	38	0	5	56	1.22
48004728--48004770	20	2.1	21	87	12	63	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48006263--48006319	24	2.4	24	87	0	87	24	10	10	54	1.66
48008071--48008121	24	2.1	24	85	0	66	25	7	7	58	1.53
48008087--48008133	24	2.0	24	86	0	67	23	12	10	53	1.70
48010192--48010216	7	3.6	7	100	0	50	28	16	24	32	1.96
48013868--48013919	25	2.1	25	82	7	61	51	1	5	40	1.37
48014886--48016393	228	6.6	227	86	1	959	30	21	26	22	1.99
48014885--48016465	456	3.5	451	81	3	1515	30	21	26	22	1.99
48015063--48016411	228	5.9	227	85	2	1294	29	20	27	21	1.98
48017710--48017759	19	2.7	18	88	11	75	68	0	6	26	1.13
48017698--48017759	9	7.1	9	70	26	53	64	0	4	30	1.14
48022135--48022211	32	2.3	32	78	10	84	29	5	5	59	1.41
48024869--48025917	228	4.6	228	83	2	984	31	23	23	22	1.99
48024868--48025917	455	2.3	457	80	3	1150	31	23	23	22	1.99
48034790--48034894	37	2.8	38	81	8	133	34	25	22	17	1.96
48052378--48052409	6	5.3	6	92	0	55	53	12	15	18	1.73
48059053--48059079	9	3.0	9	100	0	54	33	22	11	33	1.89
48060932--48060983	18	2.9	18	91	0	77	44	15	15	25	1.85
48063112--48063177	30	2.2	30	91	0	105	59	6	16	18	1.57
48063112--48063187	30	2.5	30	87	4	91	60	5	17	17	1.53
48064790--48064876	19	4.4	18	71	24	68	41	2	2	54	1.26
48064801--48064876	6	12.3	6	72	14	57	42	1	2	53	1.23
48064809--48064856	25	1.9	25	91	0	78	45	0	2	52	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48066861--48067174	59	5.3	58	82	3	326	32	28	3	35	1.75
48066919--48067014	29	3.3	29	69	13	88	34	31	2	32	1.70
48066872--48067177	118	2.6	117	82	5	366	31	28	3	35	1.75
48066950--48067052	30	3.4	30	67	23	81	34	26	1	36	1.68
48067075--48067175	30	3.4	29	65	18	73	29	26	5	37	1.80
48076412--48076454	22	2.0	22	90	4	70	39	4	23	32	1.75
48077516--48077551	18	1.9	19	88	5	56	55	5	0	38	1.23
48091553--48091617	30	2.2	30	83	5	78	43	0	7	49	1.31
48092967--48093021	27	2.1	26	93	3	92	41	0	38	20	1.52
48093901--48093951	27	1.9	26	84	4	66	27	1	1	68	1.11
48094809--48095016	54	3.8	54	80	5	249	30	13	27	27	1.95
48094809--48095018	109	1.9	109	87	3	307	30	13	27	28	1.94
48100652--48100697	21	2.1	23	84	8	60	39	2	6	52	1.40
48105269--48105303	18	1.9	18	88	0	52	22	0	8	68	1.16
48106048--48106072	6	4.2	6	100	0	50	32	0	0	68	0.90
48107493--48107519	2	13.5	2	100	0	54	51	0	0	48	1.00
48110432--48111299	181	4.7	183	95	1	1512	47	10	17	24	1.78
48114178--48114231	25	2.2	25	83	6	65	55	1	1	40	1.21
48115426--48115470	25	1.9	24	82	13	58	24	11	15	48	1.77
48117202--48117244	18	2.4	18	80	7	52	46	2	0	51	1.13
48118797--48120649	462	4.0	462	99	0	3688	36	9	16	37	1.82
48122934--48122979	20	2.2	21	88	3	67	8	15	19	56	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48128924--48128982	30	1.9	31	86	3	84	55	8	8	27	1.58
48130730--48130789	22	2.7	22	82	12	70	61	3	1	33	1.22
48130731--48130823	11	8.4	10	68	16	51	60	6	1	32	1.29
48130730--48130789	21	2.8	21	82	9	68	61	3	1	33	1.22
48133230--48133283	12	5.0	10	76	14	54	62	3	0	33	1.12
48133225--48133283	23	2.6	23	84	7	77	62	3	0	33	1.12
48133881--48133945	10	6.8	9	70	19	51	33	0	6	60	1.22
48133878--48133930	19	2.8	18	80	5	61	33	0	5	60	1.20
48133874--48133943	29	2.4	29	83	9	97	34	0	7	58	1.25
48138777--48138844	30	2.2	31	85	12	88	19	20	19	41	1.91
48141382--48141408	12	2.2	12	100	0	54	40	18	14	25	1.89
48141588--48141631	18	2.5	17	82	10	52	34	0	6	59	1.24
48141593--48141642	18	2.5	20	81	12	59	28	0	8	64	1.22
48141601--48141647	18	2.4	19	86	10	60	27	0	4	68	1.08
48143392--48143457	33	2.0	32	85	2	87	72	1	1	24	1.01
48150512--48150542	15	2.1	15	93	0	53	29	0	0	70	0.87
48155922--48155991	13	5.2	13	69	6	50	38	2	1	57	1.23
48162020--48162050	2	16.0	2	93	6	55	51	0	0	48	1.00
48163003--48163038	13	2.9	12	88	8	54	66	0	0	33	0.92
48166679--48166704	2	13.0	2	100	0	52	50	0	0	50	1.00
48169612--48169804	29	6.7	29	82	4	228	34	2	25	37	1.70
48169601--48169722	59	2.1	59	88	0	181	33	1	25	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48169613--48169804	57	3.3	56	83	3	213	34	2	25	36	1.70
48170939--48170991	19	2.9	19	86	5	74	45	3	0	50	1.19
48171743--48171803	27	2.3	27	85	0	77	52	3	1	42	1.27
48171763--48171802	16	2.4	17	91	4	64	57	2	0	40	1.12
48173716--48173740	13	1.9	13	100	0	50	64	0	4	32	1.12
48176842--48176881	21	1.9	21	100	0	80	50	10	5	35	1.58
48178568--48178689	22	5.4	22	89	5	181	41	23	22	11	1.86
48178568--48178689	47	2.7	44	86	7	181	41	23	22	11	1.86
48178543--48178689	69	2.1	69	89	2	224	40	22	25	11	1.87
48181363--48181445	10	8.4	10	74	17	68	33	1	0	65	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171