genome.fa.s3.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  77  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26458067--26458168	29	3.4	28	77	12	80	64	1	12	20	1.37
26458068--26458137	29	2.4	30	83	4	81	65	2	11	20	1.37
26463312--26463359	20	2.4	20	80	13	55	33	0	6	60	1.22
26467081--26467183	54	1.9	54	86	4	145	25	19	16	38	1.92
26470874--26470941	6	11.3	6	77	12	68	42	2	1	52	1.25
26470865--26470938	17	4.6	16	80	11	80	39	2	1	56	1.22
26472656--26472963	30	10.3	30	91	1	444	38	24	2	34	1.68
26472791--26472845	15	3.3	19	63	36	54	40	27	3	29	1.73
26472999--26473093	30	3.2	30	65	19	72	34	26	3	35	1.72
26472971--26473196	59	3.9	58	84	5	294	30	28	5	34	1.81
26472939--26473163	118	1.9	115	83	9	271	32	28	4	35	1.76
26477858--26478005	54	2.7	54	96	0	269	24	26	14	34	1.94
26487637--26487697	26	2.4	25	92	7	106	44	11	11	32	1.76
26489526--26489556	3	10.3	3	100	0	62	67	0	0	32	0.91
26489801--26489852	22	2.4	22	96	0	95	30	23	7	38	1.83
26489863--26489894	16	2.0	17	88	11	50	68	0	9	21	1.17
26490338--26490667	43	7.7	43	74	6	231	29	25	16	29	1.97
26490342--26490667	129	2.5	132	79	9	334	28	25	16	29	1.97
26490338--26490730	43	9.1	42	74	9	215	29	25	15	29	1.96
26490954--26491002	26	1.9	25	83	4	62	42	20	8	28	1.80
26494394--26494435	18	2.3	18	95	0	75	35	0	2	61	1.09
26494545--26494762	41	5.3	41	79	0	229	20	27	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26494527--26494760	82	2.9	81	84	3	308	21	26	18	33	1.96
26496958--26497280	41	7.9	41	80	1	306	20	27	17	34	1.95
26496943--26497282	82	4.1	82	81	1	358	20	27	17	34	1.95
26496931--26497282	123	2.9	123	77	5	361	19	27	17	34	1.95
26497149--26497327	82	2.2	83	89	2	270	17	23	18	40	1.91
26497311--26497383	36	2.0	37	91	2	121	21	21	21	34	1.97
26497663--26497745	41	2.0	41	95	0	148	32	13	22	31	1.92
26498650--26498706	22	2.6	21	78	13	53	35	17	7	40	1.77
26499037--26499092	25	2.2	26	80	3	69	67	0	1	30	1.01
26499598--26499674	21	3.5	21	69	22	59	44	5	2	48	1.39
26500656--26500711	19	2.8	21	76	13	64	37	0	1	60	1.07
26501887--26501964	39	2.0	39	85	5	104	25	15	17	41	1.89
26502079--26502124	24	1.9	24	86	0	65	39	4	45	10	1.59
26507220--26507276	2	28.5	2	96	0	105	49	49	1	0	1.11
26513009--26513189	95	1.9	96	86	5	260	38	13	17	30	1.88
26513405--26513466	28	2.2	28	80	5	72	30	14	25	29	1.95
26513568--26513768	30	6.8	29	78	8	183	34	4	25	35	1.76
26513538--26513767	60	3.9	58	80	10	234	33	5	24	36	1.78
26514619--26514666	23	2.1	23	84	0	60	18	20	6	54	1.65
26515726--26515797	17	4.2	17	76	3	72	54	4	4	37	1.39
26520090--26520194	28	3.6	30	73	20	89	35	2	28	33	1.72
26520062--26520288	59	3.9	57	77	10	176	35	2	25	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26520062--26520249	29	6.4	29	74	11	152	35	1	26	36	1.66
26520061--26520292	88	2.6	86	76	14	224	35	2	26	35	1.70
26521462--26521504	15	2.8	15	85	3	59	37	6	2	53	1.41
26527516--26527707	103	1.9	103	82	2	242	28	13	26	31	1.94
26528541--26528983	50	9.0	49	70	8	175	34	18	28	18	1.94
26528556--26528983	147	2.9	147	77	4	366	34	18	28	18	1.94
26529252--26529899	39	16.7	39	71	14	378	22	32	20	24	1.98
26529250--26529821	78	7.4	78	85	2	733	22	32	20	23	1.98
26529251--26529821	310	1.8	310	86	3	835	22	32	20	23	1.98
26529939--26530062	39	3.2	38	70	6	106	23	30	20	25	1.99
26529937--26530101	78	2.1	78	83	3	208	23	28	20	27	1.99
26530510--26530558	17	2.9	16	81	6	53	34	2	2	61	1.19
26530999--26531078	34	2.4	34	95	0	151	30	12	15	42	1.83
26532503--26532715	30	7.2	30	76	11	142	38	24	2	35	1.68
26532520--26532848	29	11.3	29	79	8	246	35	26	3	34	1.72
26532960--26532999	14	2.8	15	79	20	50	22	10	5	62	1.46
26539247--26539312	30	2.2	31	81	8	73	37	4	7	50	1.52
26539677--26539746	11	6.0	11	75	15	52	37	2	1	58	1.22
26539678--26539746	6	11.7	6	72	14	54	37	2	1	57	1.22
26539711--26539738	14	2.0	14	100	0	56	35	7	0	57	1.26
26539678--26539746	17	4.2	17	83	10	90	37	2	1	57	1.22
26540469--26540507	3	12.7	3	83	5	51	28	2	2	66	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26540469--26540508	19	2.1	19	90	0	62	27	2	2	67	1.16
26540573--26540621	9	5.2	9	85	7	62	55	2	0	42	1.11
26540581--26540639	19	3.1	19	85	4	66	54	0	1	44	1.10
26540608--26540644	19	1.9	19	88	0	56	54	0	2	43	1.14
26540955--26540983	11	2.5	12	94	5	51	79	0	20	0	0.74
26541708--26541867	30	5.4	29	74	17	125	33	28	3	35	1.73
26541679--26541867	29	6.5	29	73	15	151	32	29	3	34	1.73
26541678--26541909	58	4.0	58	82	8	256	31	30	5	33	1.81
26547678--26547729	19	2.7	19	84	0	68	67	5	0	26	1.13
26547859--26547913	29	1.9	28	85	3	74	54	0	18	27	1.44
26548026--26548066	4	9.8	4	84	10	55	75	2	2	19	1.03
26548026--26548060	18	1.9	18	94	0	61	74	2	2	20	1.08
26548120--26548173	25	2.2	25	83	6	65	64	1	7	25	1.30
26548259--26548294	18	1.9	18	88	5	54	77	5	2	13	1.05
26551921--26551954	3	11.3	3	100	0	68	32	0	0	67	0.91
26553340--26553525	92	2.0	92	100	0	372	31	8	16	43	1.78
26554300--26554341	20	2.1	20	86	0	57	14	14	7	64	1.48
26555658--26555719	20	3.0	20	79	9	70	17	11	9	61	1.56
26555981--26556038	29	2.1	27	90	6	89	34	0	1	63	1.04
26559065--26559133	25	2.8	25	76	8	77	13	13	10	63	1.52
26559106--26559137	15	2.1	15	94	0	55	15	12	9	62	1.54
26561763--26561796	15	2.4	14	90	5	50	23	2	14	58	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26564720--26564815	15	6.3	15	73	14	63	62	12	14	10	1.54
26564752--26564808	25	2.2	26	87	6	80	64	12	12	10	1.49
26564791--26564926	54	2.5	53	80	9	152	62	16	12	8	1.53
26564866--26565028	22	7.8	21	79	9	147	66	14	11	7	1.44
26564888--26565097	5	41.4	5	67	14	65	61	19	12	5	1.50
26564807--26564926	27	4.4	28	82	10	133	62	15	12	9	1.54
26564881--26565010	43	3.1	41	83	8	172	63	14	13	8	1.50
26564887--26565051	63	2.6	61	85	5	204	65	15	12	6	1.44
26565033--26565097	25	2.6	25	85	0	85	52	30	13	3	1.56
26565028--26565097	30	2.3	30	82	4	79	52	30	12	4	1.58
26564910--26565097	5	37.4	5	68	14	66	61	20	13	5	1.51
26566430--26566463	3	11.3	3	100	0	68	32	0	0	67	0.91
26571834--26571879	25	1.9	25	86	8	69	34	4	6	54	1.46
26574258--26574294	3	12.3	3	94	0	65	32	2	0	64	1.07
26576824--26576879	27	2.1	27	86	6	78	35	1	0	62	1.06
26577961--26578130	30	6.0	30	70	16	130	13	12	10	64	1.51
26577961--26578085	50	2.5	50	88	0	169	14	11	10	64	1.51
26577997--26578125	20	6.9	20	74	16	125	13	13	8	63	1.51
26578002--26578115	35	3.3	34	72	8	95	14	14	7	64	1.50
26581456--26581503	5	9.2	5	77	8	51	60	18	18	2	1.46
26581461--26581503	22	2.0	22	85	0	59	60	18	18	2	1.47
26581449--26581503	27	2.0	27	85	0	74	58	18	20	3	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26583940--26584088	73	2.0	74	97	1	282	51	18	11	19	1.76
26586038--26586126	25	3.5	25	82	8	108	61	12	13	12	1.56
26586066--26586112	15	3.1	15	76	11	51	65	10	14	8	1.45
26586080--26586126	15	3.5	15	70	27	50	61	12	14	10	1.56
26586121--26586168	22	2.2	22	88	0	69	58	18	12	10	1.62
26586165--26586415	5	48.4	5	74	12	134	65	15	13	4	1.42
26586039--26586288	27	9.5	26	72	15	124	62	14	12	9	1.53
26586156--26586362	37	5.8	37	70	11	155	65	15	13	6	1.45
26586180--26586299	22	5.1	22	75	19	100	65	13	11	9	1.46
26586175--26586337	27	6.4	26	75	14	135	66	13	13	6	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171