genome.fa.s3.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  120  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38043488--38043564	25	3.0	24	76	14	73	33	14	10	41	1.80
38044358--38044404	19	2.4	19	82	3	58	46	8	2	42	1.46
38044442--38044491	21	2.4	21	80	6	57	70	0	0	30	0.88
38052848--38052880	16	2.2	16	89	10	52	36	12	9	42	1.74
38055092--38055126	14	2.6	13	82	8	52	45	8	17	28	1.77
38063258--38063301	23	1.9	23	85	0	61	52	20	0	27	1.47
38063379--38063436	23	2.5	23	91	2	89	48	24	0	27	1.51
38065394--38065874	240	2.0	240	98	0	935	32	17	14	35	1.91
38068915--38069076	31	5.4	31	67	8	109	25	17	12	45	1.83
38068915--38069087	61	2.9	59	83	5	222	24	16	11	46	1.80
38072456--38072589	31	4.5	31	71	16	111	42	11	18	26	1.85
38072456--38072646	89	2.1	88	82	5	233	45	11	17	25	1.82
38075998--38076028	16	1.9	16	93	0	53	61	0	16	22	1.34
38076821--38076870	26	1.9	26	95	0	91	30	20	20	30	1.97
38076865--38076952	38	2.3	38	82	5	117	30	11	25	32	1.91
38078077--38078125	17	2.9	17	75	0	53	51	10	18	20	1.75
38081129--38081179	26	2.0	26	84	0	66	31	19	21	27	1.97
38081284--38081365	35	2.3	35	82	4	101	25	20	28	25	1.99
38082023--38082109	40	2.2	40	82	0	111	24	17	17	41	1.90
38082562--38082713	56	2.7	56	85	0	187	25	28	23	21	1.99
38083419--38083468	21	2.4	21	87	12	68	34	26	14	26	1.94
38090240--38090301	12	5.2	12	77	11	56	62	1	33	1	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38106846--38106885	21	1.9	21	85	10	55	47	7	15	30	1.72
38113550--38113583	16	2.1	16	94	0	59	38	32	14	14	1.87
38116901--38116933	17	1.9	17	93	0	57	66	0	21	12	1.23
38140416--38141100	215	3.2	214	86	4	975	28	16	14	40	1.88
38141059--38141190	46	2.9	46	94	2	221	30	10	13	45	1.77
38140629--38141623	523	1.9	522	84	2	1336	27	16	14	40	1.88
38141151--38142310	216	5.4	217	84	2	1433	26	17	13	41	1.87
38141151--38142310	433	2.7	429	85	2	1504	26	17	13	41	1.87
38142322--38145071	216	12.7	214	78	4	2521	28	16	13	40	1.87
38145062--38170454	216	117.1	214	75	7	18314	28	17	13	40	1.87
38145060--38170454	432	58.5	431	78	5	22101	28	17	13	40	1.87
38171218--38171364	28	5.2	28	78	0	123	25	16	20	37	1.93
38172602--38172672	26	2.7	26	93	2	115	54	8	11	25	1.63
38174514--38174546	16	2.1	16	88	5	50	9	12	9	69	1.36
38177432--38177468	13	2.8	14	80	12	51	75	2	13	8	1.13
38187269--38187301	6	5.3	6	96	3	57	63	0	0	36	0.95
38190449--38190632	89	2.1	89	94	0	323	50	13	9	26	1.73
38197352--38197514	86	1.9	86	81	3	200	41	4	24	28	1.75
38199563--38199630	21	3.1	21	81	8	75	54	8	23	13	1.66
38201159--38201210	26	2.0	26	100	0	104	26	7	19	46	1.77
38210202--38210226	9	2.8	9	100	0	50	88	0	0	12	0.53
38227051--38227092	21	2.0	22	85	4	59	64	4	19	11	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38228909--38228941	11	2.8	12	81	9	50	12	12	0	75	1.04
38232408--38232447	21	2.0	21	90	5	64	75	7	7	10	1.20
38232724--38232761	20	1.9	20	94	0	67	50	7	5	36	1.54
38243383--38243588	107	1.9	107	91	0	340	36	16	25	21	1.94
38244974--38245013	20	1.9	22	90	10	66	70	5	20	5	1.26
38251161--38251213	17	3.1	18	79	12	58	77	3	9	9	1.11
38259080--38259421	52	6.6	52	87	4	440	26	14	23	35	1.93
38259084--38259421	104	3.2	104	91	0	514	26	14	23	35	1.93
38259080--38259421	156	2.2	156	88	1	497	26	14	23	35	1.93
38259963--38260010	24	2.0	24	88	8	71	25	6	27	41	1.79
38260064--38260116	21	2.5	21	87	0	70	30	11	24	33	1.90
38273403--38273489	41	2.1	41	93	0	156	31	24	18	26	1.98
38273403--38273518	41	2.8	42	85	7	150	31	23	18	27	1.97
38277072--38277111	21	1.9	21	90	10	64	50	7	12	30	1.68
38281349--38281425	39	2.0	39	100	0	154	57	9	12	20	1.63
38289302--38289468	23	7.3	23	90	0	271	31	4	17	46	1.69
38289549--38289651	36	2.9	36	91	0	161	26	13	22	37	1.91
38291741--38291815	24	3.1	24	84	0	60	28	28	12	32	1.92
38291752--38292129	48	7.7	48	79	5	315	21	29	15	33	1.94
38291752--38291972	24	9.2	24	83	0	226	21	30	14	33	1.94
38291747--38292128	72	5.2	72	75	8	329	22	28	15	34	1.94
38292002--38292129	24	5.3	24	82	0	166	20	26	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38292944--38299780	759	9.0	759	99	0	13404	27	20	15	36	1.93
38334304--38334344	17	2.4	17	80	19	50	53	12	17	17	1.72
38345923--38345984	30	2.1	30	96	0	115	25	12	4	56	1.56
38347806--38347856	26	1.9	27	84	11	70	25	39	0	35	1.56
38355732--38355760	13	2.1	14	93	6	51	41	17	6	34	1.76
38373141--38373247	20	5.3	20	80	8	110	45	20	28	5	1.73
38381713--38381743	16	1.9	16	93	0	53	61	3	12	22	1.46
38391201--38391278	26	3.0	26	90	0	111	34	25	19	20	1.96
38394880--38394936	20	2.8	20	86	0	78	38	15	31	14	1.87
38400353--38400412	31	1.9	32	86	10	88	71	8	0	20	1.11
38400447--38400482	11	3.4	11	96	3	65	83	0	16	0	0.65
38400455--38400495	15	2.8	14	85	7	55	85	0	12	2	0.70
38400923--38400967	20	2.3	20	92	7	76	24	6	0	68	1.13
38402946--38403132	52	3.6	52	88	1	259	25	12	25	36	1.92
38403868--38403921	21	2.6	21	85	5	74	31	11	25	31	1.91
38410118--38410252	52	2.6	52	92	0	225	24	11	25	38	1.88
38413463--38413491	14	2.1	14	100	0	58	44	27	0	27	1.54
38418404--38418453	22	2.3	21	83	13	57	36	2	8	54	1.42
38418878--38418915	15	2.6	15	87	4	51	39	2	2	55	1.28
38440825--38440870	25	1.9	23	86	8	65	56	4	4	34	1.39
38441899--38441945	10	4.8	10	86	2	60	10	10	2	76	1.10
38442852--38443014	6	26.0	6	81	11	80	73	3	10	13	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38442873--38442904	14	2.2	15	94	5	57	87	0	0	12	0.54
38442901--38443011	12	8.9	12	84	9	134	70	1	15	12	1.25
38442873--38443010	6	21.6	7	84	10	108	73	1	12	12	1.16
38445180--38445209	13	2.4	13	94	5	53	70	0	0	30	0.88
38447606--38447658	14	3.8	13	76	11	52	20	11	3	64	1.42
38452731--38452756	13	2.0	13	100	0	52	46	7	15	30	1.74
38456149--38456189	21	1.9	22	95	5	75	31	4	21	41	1.74
38458878--38458915	18	2.1	18	95	0	67	81	0	18	0	0.69
38467827--38467870	19	2.3	19	81	11	54	34	0	0	65	0.93
38467839--38467886	17	3.0	17	69	25	50	33	0	0	66	0.92
38473181--38473228	18	2.7	18	93	0	78	33	27	18	20	1.96
38481500--38481558	18	3.3	18	87	0	82	27	18	20	33	1.96
38487814--38488061	116	2.1	116	88	1	363	31	9	27	32	1.89
38488120--38488167	21	2.3	21	85	0	60	27	12	25	35	1.92
38488131--38488170	21	1.9	21	94	0	71	25	12	25	37	1.91
38488933--38488968	18	2.0	18	88	0	54	66	5	8	19	1.38
38494737--38494783	24	2.0	24	91	4	78	8	42	2	46	1.46
38495277--38495337	24	2.5	24	97	0	113	57	24	0	18	1.40
38496159--38497419	636	2.0	634	99	0	2468	28	18	16	36	1.93
38505329--38505364	6	6.2	6	90	3	56	16	16	50	16	1.79
38505623--38509745	216	19.3	216	84	4	4833	40	14	17	28	1.88
38505629--38509745	647	6.4	646	84	4	4955	40	14	17	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38507357--38507396	21	2.0	20	85	14	55	47	20	7	25	1.75
38511548--38511589	22	1.9	22	90	0	66	45	11	7	35	1.69
38517787--38517838	18	2.9	18	80	11	70	23	17	13	46	1.83
38520440--38520465	9	2.9	9	100	0	52	0	11	0	88	0.52
38521468--38521523	3	18.7	3	78	14	62	0	32	0	67	0.91
38531749--38531773	11	2.3	11	100	0	50	28	16	0	56	1.41
38533819--38533936	59	2.0	61	83	3	150	34	13	22	28	1.92
38543015--38543080	7	9.4	7	74	0	60	34	25	19	19	1.96
38543015--38543077	14	4.5	14	83	0	72	36	25	19	19	1.94
38543134--38543193	27	2.2	27	90	0	93	11	3	41	43	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171