genome.fa.s3.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  94  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30547218--30547368	30	5.0	30	75	4	99	37	23	4	34	1.76
30558119--30558407	78	3.7	78	85	4	404	24	32	18	24	1.97
30558194--30558493	117	2.6	118	82	3	295	24	31	19	25	1.98
30558350--30558766	78	5.4	78	78	7	370	25	30	17	25	1.98
30558119--30558404	156	1.8	156	89	3	450	24	32	18	24	1.97
30558155--30558727	156	3.7	152	77	10	380	25	30	18	25	1.98
30558155--30558766	39	15.7	38	70	9	238	25	31	17	25	1.97
30558350--30558755	156	2.6	155	76	9	421	25	31	17	26	1.97
30558662--30558992	77	4.2	77	74	14	246	25	30	16	27	1.97
30559607--30559639	6	5.7	6	85	7	50	48	0	0	51	1.00
30570923--30571045	50	2.5	50	80	5	124	38	16	24	21	1.93
30571081--30571219	40	3.5	40	83	4	167	27	28	16	27	1.97
30572899--30573048	30	5.0	30	78	10	146	38	23	4	33	1.75
30572899--30573048	60	2.5	60	84	4	187	38	23	4	33	1.75
30573089--30573134	15	3.1	15	76	17	51	28	0	6	65	1.17
30574223--30574285	22	2.8	22	73	4	54	41	3	9	46	1.52
30575433--30575472	7	5.7	7	100	0	80	0	27	0	72	0.85
30577736--30577820	42	2.0	42	100	0	170	31	14	16	37	1.88
30580449--30580713	132	2.0	132	95	1	478	35	17	11	35	1.86
30583007--30583041	18	2.1	18	89	10	56	31	0	2	65	1.07
30586022--30586057	11	3.4	11	84	7	56	36	0	27	36	1.57
30603704--30603745	3	14.0	3	100	0	84	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30603744--30603781	3	12.7	3	100	0	76	0	0	31	68	0.90
30604199--30604565	145	2.5	146	87	2	524	44	1	9	44	1.47
30604272--30604534	50	5.3	49	70	13	155	43	1	8	46	1.44
30604477--30604534	30	1.9	30	86	6	82	37	0	6	55	1.27
30611959--30612000	21	2.0	21	86	4	59	61	2	7	28	1.35
30612069--30612106	3	12.7	3	100	0	76	68	0	0	31	0.90
30628138--30628185	19	2.5	19	96	0	87	18	10	8	62	1.52
30628768--30628799	15	2.1	15	94	5	55	78	3	18	0	0.89
30630583--30630619	18	2.1	18	100	0	74	21	37	16	24	1.93
30630668--30630755	44	2.0	44	93	0	149	28	22	21	27	1.99
30648864--30649205	52	6.6	52	85	2	438	26	15	23	35	1.94
30655312--30655342	15	2.1	14	94	5	53	70	6	12	9	1.31
30659334--30659365	14	2.3	14	94	0	55	21	21	18	37	1.94
30666203--30666254	17	3.1	17	77	0	59	50	11	19	19	1.77
30666209--30666263	17	3.2	17	77	7	58	47	10	18	23	1.80
30673049--30673109	26	2.3	26	80	0	68	27	26	19	26	1.99
30674178--30674235	19	3.1	19	76	0	62	39	18	25	15	1.91
30689689--30689759	35	2.0	35	91	0	115	36	14	23	25	1.92
30696639--30696691	28	2.0	26	82	14	63	54	1	7	35	1.40
30696675--30696714	18	2.2	19	86	4	55	67	2	0	30	1.04
30699228--30699287	30	2.0	30	100	0	120	40	6	3	50	1.45
30699603--30699670	34	2.0	34	100	0	136	47	11	11	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30700047--30700089	21	2.0	21	82	8	52	23	30	13	32	1.93
30706126--30706155	14	2.2	14	94	5	53	36	10	23	30	1.87
30707050--30707086	16	2.3	16	100	0	74	21	24	27	27	1.99
30720761--30720843	6	13.8	6	75	9	62	63	3	31	1	1.19
30720766--30720843	18	4.3	18	76	11	79	65	2	30	1	1.14
30742734--30742843	39	2.8	39	78	0	139	31	13	28	26	1.94
30748066--30748136	11	6.1	11	74	11	52	28	0	7	64	1.19
30749082--30749173	20	4.6	19	71	6	58	46	15	6	31	1.71
30757156--30757194	2	19.5	2	100	0	78	48	0	0	51	1.00
30764103--30764144	18	2.3	18	84	8	50	54	7	0	38	1.28
30767043--30767075	18	1.9	17	88	11	50	45	27	15	12	1.81
30767115--30767148	13	2.5	13	85	4	50	61	14	0	23	1.33
30772125--30772179	13	4.2	13	88	2	74	14	18	23	43	1.87
30773378--30773402	6	4.2	6	100	0	50	32	0	0	68	0.90
30777059--30777102	18	2.4	18	77	11	54	47	0	2	50	1.13
30778251--30778307	21	2.7	21	81	13	64	33	28	14	24	1.94
30779063--30779561	52	9.6	52	87	0	674	36	23	13	26	1.91
30781486--30781530	22	2.0	22	100	0	90	17	13	22	46	1.83
30784449--30784474	6	4.3	6	100	0	52	15	0	0	84	0.62
30791082--30791138	26	2.2	26	87	3	80	29	1	3	64	1.20
30791079--30791119	16	2.5	17	80	7	50	31	2	2	63	1.20
30792009--30792046	3	12.7	3	100	0	76	65	0	34	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30793358--30793398	21	2.0	20	86	13	57	75	0	19	4	0.98
30795877--30795943	35	1.9	35	90	0	107	35	26	13	23	1.92
30796503--30796561	20	3.0	20	82	7	66	45	1	8	44	1.44
30796533--30796564	15	2.2	14	94	5	55	53	0	3	43	1.16
30800582--30800844	30	8.9	28	77	11	152	37	4	23	34	1.75
30800638--30800849	30	7.1	29	83	9	232	38	3	23	34	1.71
30800638--30800849	89	2.4	90	85	5	279	38	3	23	34	1.71
30804943--30804975	16	2.1	16	88	11	50	30	3	15	51	1.58
30808637--30808686	26	1.9	26	92	8	84	30	4	8	58	1.45
30809025--30809062	16	2.4	16	90	0	58	47	0	21	31	1.51
30809351--30809401	21	2.4	22	83	3	59	56	9	13	19	1.65
30811395--30811544	61	2.5	58	81	8	169	53	2	0	43	1.19
30811449--30811525	32	2.7	27	72	18	75	50	3	0	45	1.20
30812419--30812446	2	14.0	2	100	0	56	50	0	0	50	1.00
30814391--30814488	23	4.2	23	77	10	99	13	25	21	39	1.89
30818564--30818643	23	3.5	22	81	5	88	33	27	23	15	1.94
30818638--30818685	23	2.1	23	92	0	78	39	20	29	10	1.86
30832054--30832095	17	2.5	17	92	0	66	47	19	11	21	1.81
30834552--30834618	31	2.2	29	86	5	98	40	2	7	49	1.46
30834612--30834679	31	2.3	30	82	5	84	41	13	5	39	1.68
30835073--30835161	44	2.0	44	82	8	110	41	4	10	43	1.58
30835244--30835329	44	2.0	43	88	2	127	44	6	8	40	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30834985--30835414	169	2.6	168	83	5	513	44	8	9	37	1.67
30838712--30838751	21	1.9	20	94	5	62	47	7	10	35	1.65
30843658--30843703	24	2.0	23	86	4	65	4	23	8	63	1.42
30848962--30849050	42	2.1	42	82	0	106	29	11	26	32	1.91
30863745--30863953	66	3.2	66	89	0	310	42	22	7	28	1.81
30864536--30864615	24	3.3	23	89	0	88	27	21	25	26	1.99
30867572--30867616	20	2.2	20	84	4	54	15	11	8	64	1.49
30867579--30867616	20	1.9	20	88	0	58	13	7	10	68	1.39
30871352--30871606	78	3.2	77	80	9	271	31	12	12	42	1.81
30873692--30873753	30	2.1	30	93	0	106	30	22	22	24	1.99
30882908--30883241	166	2.0	166	93	1	571	30	16	24	29	1.96
30887357--30887608	39	6.3	40	70	11	160	32	26	15	25	1.95
30887357--30887607	79	3.2	78	86	4	333	32	26	15	25	1.95
30888229--30888258	14	2.1	15	93	6	53	73	0	0	26	0.84
30888337--30888370	16	2.1	17	94	5	61	55	26	0	17	1.42
30889424--30889515	29	3.1	29	81	9	89	42	18	1	38	1.58
30889424--30889548	30	4.2	28	85	6	92	40	19	1	38	1.61
30889464--30889594	30	4.4	30	88	4	167	38	21	3	37	1.69
30889464--30889619	60	2.6	60	83	4	183	37	22	3	37	1.70
30889434--30889649	59	3.6	59	77	7	197	37	20	4	37	1.72
30906551--30906600	24	2.1	24	84	0	64	48	18	24	10	1.78
30914465--30915245	98	8.0	98	81	3	777	37	16	25	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30914519--30915022	49	10.3	49	70	11	264	37	15	25	21	1.93
30914495--30915245	294	2.5	291	82	5	902	37	16	25	21	1.93
30914520--30915167	49	13.2	48	66	14	186	37	16	25	21	1.93
30915655--30915699	22	2.1	22	87	4	65	68	8	0	22	1.16
30922432--30922482	13	3.8	13	82	10	59	43	0	17	39	1.49
30925100--30925277	40	4.6	40	83	5	202	50	6	21	21	1.72
30925100--30925277	76	2.3	79	82	3	209	50	6	21	21	1.72
30932580--30932652	36	2.0	36	84	5	94	31	28	0	39	1.57
30932706--30932767	25	2.5	25	84	2	72	29	40	0	30	1.57
30939875--30939899	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171