genome.fa.s3.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  117  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37241957--37242107	69	2.2	67	83	11	180	47	19	21	12	1.82
37249204--37249381	23	7.7	23	74	11	130	43	20	23	12	1.85
37249204--37249380	71	2.5	69	80	12	182	44	19	23	12	1.85
37253552--37253576	12	2.1	12	100	0	50	8	8	0	84	0.79
37255708--37255861	80	1.9	80	93	2	265	28	16	20	34	1.94
37261148--37261217	31	2.3	30	83	11	81	21	12	20	45	1.84
37261148--37261223	30	2.5	31	83	10	86	21	11	21	46	1.83
37266323--37266364	21	2.0	21	85	0	57	30	9	4	54	1.53
37267898--37267960	13	4.8	13	82	0	63	44	4	11	39	1.61
37268310--37268335	13	2.0	13	100	0	52	38	15	7	38	1.76
37268378--37268427	23	2.2	23	92	0	82	20	6	34	40	1.77
37273437--37273597	23	6.9	23	80	6	148	40	22	25	11	1.87
37279674--37279834	23	6.9	23	80	6	148	40	22	25	11	1.87
37285481--37285519	17	2.3	17	86	0	51	51	17	12	17	1.76
37286635--37286668	17	2.0	17	88	0	50	41	0	8	50	1.34
37288327--37288411	29	2.9	29	71	13	77	31	22	9	36	1.86
37288426--37288677	29	8.7	29	80	5	242	37	22	1	38	1.64
37288422--37288702	59	4.8	57	81	6	250	36	21	2	39	1.66
37294366--37294445	12	6.3	12	89	10	108	81	0	18	0	0.70
37294366--37294446	19	4.2	20	81	16	93	80	0	19	0	0.72
37294365--37294446	23	3.5	23	76	20	80	80	0	19	0	0.71
37295641--37295981	101	3.4	101	80	4	330	41	21	24	12	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37295648--37296113	51	9.3	51	75	7	294	41	20	24	12	1.88
37295839--37296142	49	6.1	49	81	7	263	41	22	25	11	1.87
37295851--37296142	98	2.9	98	84	5	338	41	21	24	11	1.87
37295954--37296173	98	2.2	98	84	2	289	38	20	26	14	1.91
37296532--37297052	207	2.5	206	91	0	817	34	19	22	23	1.97
37296868--37297210	159	2.2	159	93	0	578	34	21	21	22	1.97
37296661--37297417	366	2.1	366	94	0	1316	35	20	22	22	1.96
37297027--37297540	207	2.5	207	88	1	735	35	19	23	22	1.96
37297888--37297917	15	2.0	15	93	0	51	30	3	0	66	1.07
37297926--37297975	23	2.2	24	82	10	68	40	0	6	54	1.25
37297923--37297972	17	2.9	17	82	11	66	38	0	8	54	1.30
37299648--37299938	30	9.9	29	75	8	232	37	25	2	34	1.68
37299648--37299935	58	4.9	59	77	6	253	38	24	2	35	1.67
37299894--37299962	29	2.4	30	88	9	99	33	21	5	39	1.77
37299894--37299980	30	3.0	29	82	11	90	32	24	9	34	1.87
37299894--37299981	29	3.0	30	80	12	94	32	23	9	34	1.86
37307921--37308246	161	2.0	161	91	1	528	37	16	20	25	1.93
37311281--37311330	12	4.2	12	76	19	50	2	34	2	62	1.18
37321062--37321118	28	2.3	24	82	17	64	19	8	14	57	1.62
37321070--37321126	28	2.0	28	96	0	105	22	7	19	50	1.71
37323088--37323209	25	4.8	25	91	3	183	40	18	29	12	1.87
37323163--37323293	22	5.9	22	78	7	122	41	22	22	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37326737--37326783	18	2.6	18	86	6	69	72	0	12	14	1.13
37329308--37329350	22	2.0	22	85	0	59	23	44	16	16	1.86
37330156--37330206	21	2.4	21	84	12	61	47	3	0	49	1.20
37331556--37331707	80	1.9	80	83	2	198	32	22	18	26	1.97
37333218--37333270	17	2.9	17	76	17	54	56	1	1	39	1.21
37335544--37335571	2	14.0	2	100	0	56	50	0	0	50	1.00
37344479--37344517	14	2.7	15	88	4	53	20	0	12	66	1.24
37372675--37373214	110	4.9	110	83	4	566	22	26	16	34	1.95
37372675--37373214	220	2.4	224	84	2	694	22	26	16	34	1.95
37377310--37377348	20	1.9	21	89	5	62	10	25	2	61	1.41
37386923--37387146	123	1.8	124	81	4	283	24	21	15	38	1.92
37387092--37387602	110	4.6	110	82	3	558	23	26	15	34	1.95
37387092--37387623	220	2.4	224	83	3	662	23	25	15	34	1.95
37394581--37394606	10	2.6	10	100	0	52	0	38	0	61	0.96
37397272--37397374	4	25.8	4	93	0	152	46	1	3	47	1.32
37397272--37397374	22	4.7	22	95	0	152	46	1	3	47	1.32
37397272--37397374	18	5.7	18	91	0	152	46	1	3	47	1.32
37446560--37446606	15	3.1	15	78	12	51	68	12	19	0	1.21
37459564--37460050	110	4.4	110	85	1	598	34	17	26	22	1.96
37459564--37460093	220	2.4	224	84	3	660	34	16	26	22	1.95
37460040--37460271	124	1.9	124	85	5	326	38	15	21	24	1.92
37461123--37461153	15	2.1	15	93	0	53	58	0	3	38	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37472803--37472833	12	2.6	12	94	0	53	41	0	6	51	1.27
37502248--37504952	208	13.0	209	87	2	3595	24	21	15	38	1.92
37503162--37503322	85	1.9	85	84	5	218	24	21	16	37	1.94
37503370--37503528	85	1.9	85	86	2	230	28	20	13	37	1.91
37502210--37504951	417	6.6	417	87	1	3689	24	21	15	38	1.92
37502248--37504952	625	4.3	625	89	1	3759	24	21	15	38	1.92
37503787--37503946	85	1.9	85	84	7	218	26	23	13	36	1.92
37503985--37504152	85	2.0	85	86	0	237	25	22	15	36	1.93
37504628--37504787	86	1.9	86	82	0	203	23	20	16	39	1.92
37504967--37505079	39	2.9	39	78	13	133	25	16	31	25	1.97
37505333--37505462	50	2.6	48	77	7	134	16	31	16	34	1.92
37516656--37516682	13	2.1	13	100	0	54	48	14	7	29	1.71
37518871--37519005	40	3.4	38	73	12	96	30	28	20	21	1.98
37518903--37519006	37	2.7	38	76	5	93	31	26	19	22	1.97
37519089--37519164	24	3.2	25	78	16	63	25	23	0	51	1.49
37519109--37519163	18	3.1	18	86	0	74	21	27	0	50	1.49
37519126--37519159	6	5.7	6	100	0	68	17	32	0	50	1.47
37523666--37523805	55	2.5	56	90	1	219	19	17	34	29	1.94
37524360--37524500	40	3.5	40	82	0	194	34	21	19	24	1.97
37524647--37524704	17	3.7	17	71	21	54	22	12	22	43	1.86
37524583--37524709	29	4.4	29	81	2	112	25	16	17	40	1.90
37531560--37531618	18	3.3	18	85	0	82	38	22	22	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37537246--37537279	17	1.9	18	88	5	52	58	0	41	0	0.98
37537778--37537827	12	4.3	12	78	17	61	66	0	34	0	0.92
37537778--37537817	21	1.9	21	94	0	71	67	0	32	0	0.91
37538101--37538164	27	2.4	27	94	0	110	51	21	23	3	1.62
37538886--37538942	21	2.7	21	94	0	96	71	3	15	8	1.24
37548637--37548717	27	3.0	27	83	3	92	25	11	24	38	1.89
37548656--37548811	27	5.7	27	75	11	93	28	14	21	34	1.93
37550115--37550222	51	2.1	51	80	0	117	41	8	18	31	1.80
37558237--37558399	62	2.7	60	83	5	211	25	18	8	47	1.76
37558237--37558419	60	3.0	60	80	3	204	26	18	9	45	1.79
37558620--37558723	30	3.5	30	86	2	138	49	12	10	27	1.74
37560633--37560690	16	3.5	17	78	19	52	67	1	8	22	1.27
37562428--37562667	45	5.4	45	81	3	268	27	16	26	29	1.97
37562428--37562711	89	3.2	89	81	1	302	26	16	27	29	1.97
37562387--37562711	89	3.7	88	79	4	289	26	16	26	30	1.97
37562387--37562672	45	6.5	44	79	8	224	27	16	26	30	1.97
37562323--37563427	40	27.1	40	75	9	712	25	16	25	32	1.96
37562323--37563427	118	9.0	119	74	10	645	25	16	25	32	1.96
37562323--37563419	78	13.4	79	74	11	590	25	16	25	32	1.96
37564605--37564665	14	4.4	14	79	8	63	0	18	0	81	0.68
37564605--37564665	22	2.8	21	85	7	68	0	18	0	81	0.68
37572155--37572227	36	2.0	36	87	10	105	13	30	24	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37574167--37574193	8	3.4	8	100	0	54	62	0	0	37	0.95
37578946--37578985	21	1.9	21	85	10	55	60	0	5	35	1.19
37580019--37580071	21	2.5	21	90	0	79	0	45	20	33	1.52
37580067--37580214	66	2.2	66	89	2	226	16	23	14	44	1.85
37582945--37583278	41	8.1	41	77	6	257	21	28	24	25	1.99
37582945--37583278	82	4.1	82	81	4	316	21	28	24	25	1.99
37582944--37583239	123	2.4	124	78	4	312	22	28	25	23	1.99
37583571--37583998	41	10.4	40	78	8	301	23	28	23	25	2.00
37583591--37583959	41	8.9	41	79	5	316	24	28	24	23	2.00
37583593--37583978	82	4.7	81	79	5	400	23	28	24	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171