genome.fa.s3.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  135  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41903429--41903559	52	2.5	53	91	3	203	21	12	33	32	1.90
41904124--41904166	12	3.7	12	87	6	61	30	16	9	44	1.79
41904812--41904877	33	2.0	32	88	2	96	36	4	21	37	1.74
41906225--41906266	16	2.5	16	84	7	57	66	0	2	30	1.04
41906312--41906349	2	19.5	2	94	5	69	50	0	0	50	1.00
41906876--41906914	19	2.1	19	85	9	53	43	5	2	48	1.38
41927340--41927374	18	1.9	18	94	0	61	37	31	14	17	1.89
41927369--41927412	17	2.5	17	85	10	54	38	25	15	20	1.92
41927425--41927575	79	1.9	79	88	0	230	33	23	19	23	1.97
41935681--41935719	17	2.3	17	90	0	60	46	25	12	15	1.81
41940434--41940512	39	2.0	39	80	9	90	53	1	0	45	1.08
41952857--41952923	33	1.9	36	88	8	104	58	4	29	7	1.46
41953788--41953845	25	2.4	24	83	11	66	8	24	22	44	1.80
41956256--41956303	24	2.0	25	87	4	71	43	2	2	52	1.24
41958369--41958417	22	2.3	21	83	16	57	6	22	18	53	1.66
41962524--41962597	3	24.7	3	94	0	94	24	0	8	67	1.17
41970195--41970247	23	2.2	25	77	12	58	33	3	1	60	1.26
41970454--41970502	21	2.3	21	82	6	64	65	2	6	26	1.27
41971304--41971368	19	3.3	20	89	6	98	58	3	0	38	1.14
41971351--41971412	19	3.3	19	70	22	58	56	0	0	43	0.99
41971356--41971413	18	3.2	18	75	17	57	53	0	0	46	1.00
41971408--41971435	12	2.3	12	100	0	56	71	7	0	21	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41976895--41976936	17	2.4	17	88	4	57	47	0	28	23	1.52
41978603--41978649	24	2.0	24	87	8	69	74	6	0	19	1.03
41978789--41978987	30	6.7	30	82	4	215	35	5	22	36	1.77
41978830--41978987	61	2.6	61	88	1	228	36	5	20	38	1.75
41979351--41979390	20	2.0	20	90	0	62	20	35	2	42	1.65
41982536--41982708	45	3.8	45	80	3	179	41	16	23	19	1.90
41982542--41982708	89	1.9	89	82	5	212	40	16	23	19	1.91
41985968--41986011	22	2.2	19	88	12	61	36	15	0	47	1.46
41993133--41993212	21	3.8	21	80	3	90	33	22	18	25	1.97
41993195--41993243	18	2.7	18	74	0	53	36	26	22	14	1.92
42000021--42000074	24	2.3	24	78	18	60	25	3	3	66	1.25
42000036--42000089	26	2.2	24	83	12	65	27	3	3	64	1.27
42001499--42001542	23	2.0	22	86	4	61	50	4	2	43	1.35
42003341--42003381	21	2.0	21	85	9	57	53	2	7	36	1.42
42003901--42003931	7	4.4	7	100	0	62	0	61	0	38	0.96
42011390--42011424	18	1.9	18	88	11	54	74	0	2	22	0.95
42023619--42023662	2	22.0	2	100	0	88	50	0	0	50	1.00
42026642--42026706	20	3.5	19	70	14	55	72	3	18	6	1.19
42034609--42035996	162	8.6	162	93	1	2311	33	19	20	26	1.96
42038945--42039100	36	4.4	36	69	8	104	36	18	21	23	1.95
42038919--42039100	71	2.5	72	79	6	217	34	20	22	23	1.97
42039471--42039760	97	2.9	103	82	10	373	45	16	5	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42039762--42039844	23	3.7	23	78	1	87	40	14	10	33	1.81
42042147--42042535	192	2.0	196	92	3	651	48	14	8	28	1.74
42042570--42042638	31	2.2	31	79	5	77	40	8	7	43	1.63
42042853--42042915	33	1.9	33	100	0	126	49	9	25	15	1.75
42046286--42046327	11	3.4	12	83	12	50	7	11	0	80	0.88
42059219--42059576	162	2.2	162	91	2	576	34	19	18	26	1.96
42062612--42062700	31	2.9	32	73	20	82	50	3	1	44	1.25
42071709--42071779	6	12.3	6	71	14	60	40	1	1	56	1.17
42071720--42071779	17	3.5	17	80	8	68	41	1	1	55	1.20
42071709--42071776	11	6.0	11	77	8	57	41	1	1	55	1.18
42072456--42072502	3	15.7	3	100	0	94	31	0	0	68	0.90
42073520--42073577	24	2.5	22	71	20	55	24	6	3	65	1.33
42080713--42081483	209	3.7	208	87	2	1063	37	19	21	22	1.95
42081901--42081943	17	2.5	17	80	3	50	41	2	2	53	1.26
42082666--42082749	3	28.0	3	84	4	107	61	2	2	33	1.21
42083785--42083893	29	3.7	30	79	6	125	39	24	2	33	1.70
42083798--42083928	28	4.5	28	75	11	86	38	24	2	34	1.68
42083785--42083891	28	3.7	30	80	6	130	40	23	2	33	1.69
42083830--42083923	31	3.1	31	78	4	111	37	25	1	36	1.63
42084182--42084378	97	2.0	98	87	1	279	28	19	15	36	1.92
42085452--42085505	24	2.3	24	81	9	67	35	5	3	55	1.41
42086037--42086112	26	2.8	27	82	6	91	28	22	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42086272--42086395	53	2.4	53	82	6	146	30	33	9	25	1.88
42086979--42087042	31	2.1	29	85	5	83	32	14	12	40	1.83
42087616--42087674	27	2.1	28	84	3	75	64	11	5	18	1.44
42087614--42087675	28	2.2	29	77	8	74	64	11	4	19	1.43
42093838--42095066	162	7.6	162	93	0	2111	33	19	20	26	1.96
42096349--42096397	23	2.2	22	85	3	62	40	6	0	53	1.26
42097536--42097577	20	2.1	20	100	0	84	14	9	33	42	1.78
42098707--42098764	24	2.5	23	78	10	64	50	0	1	48	1.11
42098958--42098982	13	1.9	13	100	0	50	40	24	8	28	1.83
42102355--42102514	80	2.0	79	87	3	232	31	27	19	21	1.97
42102916--42102967	17	3.1	17	83	10	70	36	0	5	57	1.23
42102906--42102999	34	2.7	34	83	4	100	36	2	4	57	1.30
42103646--42103688	3	14.0	3	85	4	59	65	2	0	32	1.06
42104761--42105043	29	9.6	29	67	15	118	32	25	1	39	1.66
42104758--42105045	59	4.9	59	84	5	336	32	26	1	39	1.66
42104790--42104897	29	3.7	30	77	15	127	35	26	0	37	1.57
42104766--42105042	117	2.4	116	83	8	323	33	25	1	38	1.67
42104788--42105045	58	4.4	59	84	7	296	32	26	1	39	1.66
42104766--42105106	117	2.9	117	79	11	310	32	26	2	38	1.71
42111987--42112137	23	6.4	24	84	9	145	12	23	21	42	1.87
42114439--42114482	18	2.4	18	80	3	52	54	2	38	4	1.33
42118721--42118756	18	2.0	18	88	0	54	22	11	8	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42119179--42119623	49	9.1	49	71	7	289	39	18	24	18	1.92
42119191--42119599	98	4.2	98	82	3	459	39	18	24	18	1.92
42120025--42120135	17	6.5	17	82	6	143	38	0	3	56	1.23
42120025--42120102	6	13.7	6	71	10	56	38	0	2	58	1.12
42120789--42120822	3	11.3	3	100	0	68	64	0	0	35	0.94
42121957--42122120	58	2.8	58	82	6	174	31	27	4	35	1.78
42123205--42123320	61	1.9	60	92	1	196	40	21	2	35	1.67
42127630--42127664	2	17.0	2	88	5	52	48	2	2	45	1.32
42127670--42127708	10	4.1	10	87	12	64	20	10	10	58	1.59
42127669--42127704	18	2.0	18	100	0	72	22	11	11	55	1.66
42131921--42131962	19	2.2	19	91	0	66	14	33	14	38	1.86
42132738--42132797	24	2.5	25	86	10	90	53	10	10	26	1.66
42138930--42138967	12	3.1	13	85	14	62	39	5	0	55	1.23
42140772--42140891	42	2.8	42	94	1	204	16	21	40	20	1.91
42141524--42141610	29	3.0	29	77	9	97	24	20	16	39	1.92
42141583--42141668	29	3.0	29	77	13	104	25	16	16	41	1.88
42147783--42147975	99	1.9	99	87	4	282	54	7	6	31	1.52
42147778--42148009	99	2.3	98	83	7	265	56	6	5	32	1.47
42153574--42153632	11	4.9	12	76	13	50	52	1	0	45	1.10
42159680--42159743	11	5.3	12	75	14	51	53	1	0	45	1.10
42162550--42162583	17	2.0	18	88	11	54	64	5	11	17	1.45
42168730--42168805	11	6.8	11	70	24	52	53	0	1	44	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42172724--42172765	18	2.4	18	80	11	52	4	21	0	73	1.01
42173336--42173375	18	2.3	18	86	4	55	57	12	15	15	1.66
42184374--42184450	20	3.8	20	75	5	75	48	12	5	33	1.64
42184365--42184454	40	2.2	40	84	3	110	46	13	6	33	1.69
42186629--42186693	26	2.5	26	87	2	85	43	33	1	21	1.62
42189128--42189202	7	11.0	7	75	11	66	48	29	0	22	1.51
42189130--42189209	14	5.8	13	78	8	79	48	28	0	22	1.51
42189130--42189209	20	4.0	20	74	9	72	48	28	0	22	1.51
42189177--42189236	20	3.0	20	78	11	59	45	35	3	16	1.64
42189248--42189490	7	35.9	7	68	11	60	21	4	31	42	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171