genome.fa.s3.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  79  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26741384--26741421	19	2.1	19	90	5	60	39	0	15	44	1.47
26742973--26743024	25	2.1	25	89	3	79	57	5	0	36	1.23
26744423--26744499	23	3.4	23	81	1	93	18	16	12	51	1.75
26751678--26751721	15	2.7	15	86	10	52	15	2	2	79	0.93
26751905--26751944	6	6.8	6	88	11	57	15	30	2	52	1.55
26753210--26753292	29	2.9	28	85	3	103	30	15	27	26	1.96
26754836--26754888	19	2.8	19	75	11	56	35	0	0	64	0.94
26755183--26755234	24	2.1	26	82	7	63	51	1	1	44	1.23
26763385--26763425	19	2.2	19	86	8	57	41	2	0	56	1.13
26766406--26766457	22	2.4	20	76	17	50	55	3	1	38	1.29
26771988--26772015	2	14.0	2	100	0	56	50	0	0	50	1.00
26772118--26772142	3	8.3	3	100	0	50	68	0	0	32	0.90
26782380--26782431	6	9.0	6	81	8	54	40	0	3	55	1.18
26782380--26782446	23	2.9	22	79	16	73	41	0	2	55	1.15
26784466--26784647	30	6.1	29	80	7	170	38	19	1	40	1.62
26784466--26784647	59	3.1	59	91	1	274	38	19	1	40	1.62
26784466--26784646	60	3.0	60	91	0	274	38	19	1	39	1.62
26784629--26784932	29	10.5	28	73	17	196	31	27	3	36	1.73
26784657--26784940	59	4.9	58	83	6	337	30	29	3	35	1.74
26799744--26800063	92	3.5	92	91	0	525	34	15	17	32	1.92
26800316--26800395	11	7.1	11	79	12	83	41	0	3	55	1.18
26800316--26800394	6	13.8	6	78	15	78	41	0	3	54	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26800316--26800394	17	4.6	18	84	6	78	41	0	3	54	1.18
26800316--26800395	23	3.6	21	80	11	81	41	0	3	55	1.18
26802430--26802637	90	2.3	91	80	11	225	36	23	1	39	1.64
26802430--26802585	30	5.2	30	80	12	178	37	25	0	37	1.56
26802430--26802636	30	6.9	29	75	11	150	36	23	1	39	1.64
26802430--26802613	60	3.1	60	88	1	253	36	24	1	38	1.63
26802618--26802754	29	4.7	29	74	11	104	29	27	4	38	1.76
26802634--26802755	29	4.2	29	74	16	117	29	28	4	36	1.78
26802651--26802875	59	3.8	59	80	5	194	32	28	2	36	1.71
26802645--26802876	29	7.9	30	68	15	110	31	28	2	37	1.71
26806410--26806444	3	11.7	3	100	0	70	68	0	0	31	0.90
26806548--26806581	3	11.7	3	87	6	52	70	0	29	0	0.87
26807486--26807546	25	2.4	25	81	10	72	21	18	44	16	1.87
26807840--26807880	3	13.7	3	100	0	82	34	0	0	65	0.93
26809679--26809715	19	2.0	19	89	5	58	56	5	0	37	1.22
26815299--26815339	18	2.4	17	80	19	50	56	0	0	43	0.99
26823711--26823738	3	9.3	3	100	0	56	64	0	0	35	0.94
26824395--26824443	23	2.1	24	85	11	66	46	0	2	51	1.12
26824416--26824447	13	2.5	13	89	0	55	56	0	0	43	0.99
26830587--26830637	17	3.0	17	88	5	68	56	1	0	41	1.10
26831191--26831233	20	2.2	19	95	4	77	32	6	6	53	1.55
26831320--26831356	2	19.0	2	84	15	51	48	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26837361--26837395	11	3.2	11	100	0	70	37	0	0	62	0.95
26838693--26838748	29	2.0	28	86	10	78	44	8	7	39	1.63
26842379--26842417	15	2.6	16	84	15	57	30	0	2	66	1.05
26842891--26842948	30	2.0	30	83	6	75	48	1	5	44	1.35
26843358--26843405	24	2.0	24	91	0	78	52	2	27	18	1.57
26848255--26848409	77	2.0	77	93	0	265	40	14	8	36	1.76
26849370--26849441	37	1.9	37	82	2	90	34	4	6	54	1.47
26860428--26860477	24	2.1	24	100	0	100	28	12	40	20	1.87
26861481--26861563	43	1.9	43	92	0	139	50	2	10	36	1.50
26868505--26868530	3	8.7	3	100	0	52	0	0	30	69	0.89
26870791--26870835	21	2.3	19	80	7	54	51	17	0	31	1.46
26872545--26872584	20	2.0	21	90	5	64	42	0	0	57	0.98
26873701--26873735	15	2.3	15	90	0	52	22	0	2	74	0.95
26878898--26878941	22	2.0	22	86	0	61	63	2	2	31	1.19
26878929--26878977	22	2.3	22	82	6	57	75	2	0	22	0.90
26882407--26882456	25	2.0	25	100	0	100	40	16	16	28	1.89
26885329--26885367	17	2.4	16	82	4	51	48	2	12	35	1.55
26885383--26885409	7	3.9	7	100	0	54	74	0	11	14	1.08
26885514--26885566	27	2.0	26	82	10	63	45	1	0	52	1.11
26885817--26885884	22	3.1	22	67	12	52	44	2	1	51	1.25
26887373--26887608	49	4.8	49	80	4	217	31	16	27	25	1.96
26889434--26889481	25	1.9	25	86	0	69	25	8	20	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26895169--26895203	15	2.3	15	90	0	52	37	17	0	45	1.48
26898000--26898103	37	2.7	38	77	5	102	33	24	17	25	1.96
26900720--26900850	63	2.1	63	95	0	235	26	23	21	28	1.99
26901651--26901758	54	2.0	53	96	1	198	21	11	25	42	1.85
26901797--26901879	12	7.1	12	69	10	55	38	2	3	55	1.30
26901833--26901899	6	11.3	6	75	9	66	38	2	1	56	1.24
26901824--26901899	17	4.3	18	88	8	111	39	2	1	56	1.21
26901824--26901899	36	2.1	35	92	2	125	39	2	1	56	1.21
26908237--26909013	100	7.7	100	84	2	995	39	20	26	14	1.90
26908236--26909013	201	3.9	201	88	1	1123	39	20	26	14	1.90
26908236--26909175	100	9.4	101	78	8	646	39	20	26	14	1.90
26908227--26909173	150	6.3	150	71	9	580	39	20	25	14	1.90
26909578--26909640	17	3.5	17	83	10	63	41	4	1	52	1.32
26909710--26909840	63	2.1	63	97	0	244	25	23	22	28	1.99
26910769--26910835	6	11.3	6	75	9	66	38	2	1	56	1.24
26910760--26910835	17	4.3	18	88	8	111	39	2	1	56	1.21
26910760--26910835	36	2.1	35	92	2	125	39	2	1	56	1.21
26912711--26912903	30	6.5	29	78	8	192	36	20	1	41	1.62
26912703--26912903	90	2.2	89	84	6	246	37	19	1	41	1.63
26912762--26913008	30	8.4	29	74	14	134	33	23	2	41	1.66
26912711--26912915	60	3.5	60	88	7	285	35	20	1	42	1.61
26912822--26913071	57	4.3	58	78	9	194	30	26	4	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26914110--26914164	25	2.2	25	80	6	67	65	3	0	30	1.10
26914117--26914163	24	1.9	25	86	4	69	63	4	0	31	1.13
26916356--26916442	30	2.9	30	77	6	95	43	9	9	37	1.69
26918325--26918364	19	2.0	19	85	9	53	50	0	2	47	1.14
26923890--26923927	14	2.5	15	87	12	60	47	5	0	47	1.24
26932349--26932385	19	1.9	19	94	0	65	35	10	10	43	1.75
26932936--26932990	27	2.0	28	89	3	85	47	0	29	23	1.52
26933148--26933207	28	2.1	28	82	11	70	36	0	26	36	1.57
26935147--26935174	5	5.6	5	100	0	56	17	0	0	82	0.68
26935476--26935557	37	2.2	38	82	4	96	23	12	1	63	1.35
26943386--26943545	78	2.0	80	91	7	263	48	7	26	17	1.74
26943959--26944001	23	1.9	22	90	4	68	46	6	0	46	1.30
26944484--26944528	21	2.1	21	84	15	58	46	0	0	53	1.00
26947906--26947980	33	2.2	34	82	13	93	56	8	12	24	1.62
26947917--26948020	27	3.6	27	68	18	66	54	9	9	25	1.63
26948090--26948128	17	2.2	19	86	9	55	23	5	5	66	1.32
26948272--26948318	23	2.1	22	88	11	69	44	2	4	48	1.34
26948272--26948318	22	2.1	22	88	11	69	44	2	4	48	1.34
26952189--26952247	30	2.0	30	93	0	100	35	1	3	59	1.24
26964748--26964799	25	2.0	27	85	7	72	25	11	23	40	1.88
26965211--26965249	17	2.3	17	86	0	51	38	0	2	58	1.12
26965239--26965299	17	3.4	17	79	16	68	55	1	3	39	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26965252--26965291	21	1.9	21	100	0	80	57	0	2	40	1.12
26966555--26966844	59	4.9	59	80	9	304	37	24	2	35	1.69
26966551--26966844	29	10.0	29	76	12	269	36	25	2	35	1.69
26966555--26966926	30	12.5	30	71	16	231	37	22	3	35	1.73
26966591--26967054	59	7.9	57	78	9	243	35	22	4	37	1.75
26966976--26967051	28	2.6	29	74	15	84	35	15	5	43	1.70
26966946--26967114	58	2.9	59	82	3	198	30	19	7	42	1.79
26966952--26967050	29	3.4	31	73	12	109	31	16	6	46	1.71
26966890--26967114	117	1.9	116	80	7	258	31	19	7	41	1.79
26967153--26967219	29	2.3	29	82	10	75	31	26	8	32	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171