genome.fa.s3.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  171  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50791121--50791194	17	4.6	16	81	11	89	58	1	1	39	1.15
50791095--50791185	6	15.0	6	75	11	78	48	1	2	48	1.21
50791120--50791205	31	2.9	31	86	5	106	56	2	1	39	1.19
50791159--50791213	28	2.0	28	85	0	74	58	5	0	36	1.21
50791165--50791223	28	2.1	28	80	0	64	61	6	1	30	1.32
50791592--50791772	37	5.4	31	67	18	112	25	20	17	35	1.95
50791760--50792181	76	5.8	76	85	7	581	31	20	16	31	1.95
50791548--50792181	220	3.0	214	88	6	925	29	20	17	33	1.95
50791548--50792181	144	4.5	137	86	6	743	29	20	17	33	1.95
50791558--50792174	38	17.3	37	68	19	373	29	20	16	33	1.95
50804317--50804477	29	5.5	30	70	25	121	36	3	27	32	1.73
50804340--50804506	29	5.7	28	70	25	98	35	3	28	32	1.75
50804313--50804507	30	6.7	28	69	27	97	34	3	28	33	1.73
50804313--50804509	59	3.4	58	87	4	281	34	3	29	32	1.73
50805386--50805446	24	2.7	22	70	12	52	27	13	0	59	1.35
50806454--50806527	17	4.6	16	81	11	89	58	1	1	39	1.15
50806428--50806518	6	15.0	6	75	11	78	48	1	2	48	1.21
50806453--50806538	31	2.9	31	86	5	106	56	2	1	39	1.19
50806492--50806546	28	2.0	28	85	0	74	58	5	0	36	1.21
50806498--50806556	28	2.1	28	80	0	64	61	6	1	30	1.32
50809919--50809948	2	15.0	2	100	0	60	50	0	0	50	1.00
50813839--50813908	18	4.2	17	68	15	56	45	1	30	22	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50813854--50813915	31	2.0	32	87	3	90	46	0	30	22	1.52
50829977--50830040	34	1.9	34	96	3	121	56	9	7	26	1.58
50850531--50850659	30	4.3	31	85	9	160	34	6	24	34	1.80
50851990--50852434	40	11.3	38	70	8	230	26	17	24	31	1.97
50851991--50852439	79	5.7	79	85	0	547	26	17	24	31	1.97
50851991--50852422	237	1.8	237	85	1	614	25	17	24	32	1.97
50852494--50852627	50	2.7	50	78	1	142	24	22	16	36	1.94
50853047--50853265	112	2.0	112	90	1	350	39	13	19	27	1.89
50853571--50853622	6	7.8	6	84	16	59	0	17	0	82	0.66
50853571--50853636	14	4.7	14	84	15	84	0	18	0	81	0.68
50853569--50853622	20	2.7	19	91	8	81	0	18	0	81	0.69
50853569--50853622	21	2.6	22	91	8	87	0	18	0	81	0.69
50853570--50853642	21	3.6	19	80	10	74	1	16	0	82	0.75
50853571--50853643	27	2.7	26	85	12	94	1	16	0	82	0.75
50857947--50858078	30	4.4	30	76	9	128	35	2	22	39	1.67
50861332--50861370	6	6.5	6	100	0	78	33	17	48	0	1.48
50875487--50875526	6	6.7	6	100	0	80	32	0	67	0	0.91
50877929--50877979	25	2.0	25	88	0	75	41	1	11	45	1.52
50888303--50888377	38	2.0	38	89	0	114	29	21	20	29	1.98
50888658--50888694	2	18.5	2	88	0	56	0	45	0	54	1.00
50890497--50890538	21	2.0	21	86	9	59	64	4	0	30	1.14
50891354--50891394	11	3.9	11	84	9	59	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50912359--50912386	14	2.0	14	100	0	56	71	0	21	7	1.09
50914506--50914559	21	2.6	21	85	11	67	27	27	12	31	1.93
50917137--50917168	11	2.9	11	100	0	64	18	0	18	62	1.33
50917319--50917354	18	2.0	18	88	0	54	52	0	22	25	1.47
50923650--50923679	6	5.0	6	100	0	60	16	33	0	50	1.46
50925486--50925613	31	4.2	31	79	16	124	27	16	10	46	1.79
50925486--50925668	91	2.0	91	82	8	221	26	17	11	44	1.82
50925803--50925854	27	1.9	27	88	0	77	48	5	9	36	1.60
50933754--50933796	20	2.2	20	100	0	86	9	30	4	55	1.52
50936322--50936347	13	2.0	13	100	0	52	38	15	15	30	1.88
50939078--50939418	173	2.0	172	91	0	556	31	12	14	40	1.84
50940845--50940955	35	3.3	34	78	6	118	46	12	15	25	1.81
50951343--50951392	25	2.1	24	88	7	75	62	2	2	34	1.18
50951802--50951870	32	2.3	30	80	9	77	50	1	0	47	1.09
50951802--50951960	58	2.7	60	82	10	202	52	1	0	45	1.13
50951804--50951964	15	11.4	14	65	23	54	52	1	0	45	1.13
50958757--50958790	13	2.7	13	90	4	52	44	0	0	55	0.99
50963117--50963181	32	2.0	32	93	0	112	44	4	10	40	1.60
50970108--50970141	3	11.0	3	93	6	59	35	0	0	64	0.94
50970108--50970139	16	2.0	16	100	0	64	37	0	0	62	0.95
50971381--50971475	46	2.1	45	86	7	131	41	4	16	37	1.68
50971563--50971716	55	2.7	55	82	7	184	53	2	1	42	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50971891--50971919	14	2.1	14	100	0	58	37	6	6	48	1.57
50974748--50974902	78	1.9	82	87	7	228	47	18	14	19	1.82
50975247--50975297	26	2.0	26	96	0	93	19	25	15	39	1.91
50975859--50976064	101	2.0	101	93	0	349	27	14	14	44	1.83
50976606--50976650	19	2.3	19	88	7	63	37	15	15	31	1.89
50979644--50980408	7	110.3	7	85	5	212	4	11	51	32	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171

The End!