genome.fa.s3.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  97  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31534119--31534156	20	1.9	20	88	0	58	44	0	0	55	0.99
31535356--31535410	28	1.9	29	85	10	78	40	0	1	58	1.09
31535356--31535410	29	1.9	28	85	3	74	40	0	1	58	1.09
31535362--31535431	29	2.4	28	80	13	79	41	0	1	57	1.08
31535626--31535686	26	2.4	24	76	10	59	36	1	3	59	1.24
31537995--31538238	91	2.7	91	80	1	283	25	19	15	39	1.90
31543675--31543753	36	2.2	36	88	0	113	29	8	24	37	1.85
31544233--31544466	10	21.6	10	66	24	70	36	4	20	38	1.74
31544215--31544555	69	5.5	59	79	13	360	36	5	19	38	1.75
31544233--31544522	69	4.4	68	85	9	418	36	4	20	37	1.74
31544215--31544557	128	2.7	127	88	1	508	36	5	19	38	1.75
31544429--31544568	58	2.4	58	86	2	192	34	5	21	39	1.75
31544420--31544465	20	2.3	21	92	7	78	36	4	21	36	1.74
31548135--31548411	58	4.7	59	74	9	226	37	5	18	38	1.74
31548168--31548285	49	2.4	49	85	2	157	38	5	18	37	1.73
31548217--31548369	68	2.2	68	83	2	198	37	4	18	38	1.72
31563207--31563253	18	2.6	18	82	3	58	31	23	19	25	1.98
31569712--31569770	12	5.5	11	77	22	63	49	1	0	49	1.11
31569700--31569761	9	6.4	9	76	20	63	50	1	0	48	1.10
31569701--31569770	21	3.4	21	94	3	117	50	1	0	48	1.09
31569987--31570046	19	3.2	19	100	0	120	53	0	0	46	1.00
31570237--31570275	20	2.0	20	90	5	62	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31580123--31580200	29	2.6	30	79	2	95	33	8	17	39	1.81
31582326--31582367	13	3.2	13	78	18	50	28	7	11	52	1.64
31591459--31591554	38	2.5	37	81	8	95	26	17	20	35	1.95
31594972--31595022	21	2.4	21	74	6	50	31	15	15	37	1.89
31594806--31595115	155	2.0	155	89	1	478	32	17	17	32	1.93
31601330--31601373	21	2.1	21	100	0	88	13	13	38	34	1.84
31603768--31603800	17	1.9	18	88	11	52	30	3	0	66	1.06
31610133--31610163	15	2.1	15	93	0	53	29	6	3	61	1.37
31613730--31613926	26	7.7	26	74	2	182	40	15	26	17	1.90
31613680--31613860	76	2.4	76	98	0	344	43	17	24	15	1.87
31620911--31621092	50	3.6	50	83	3	204	39	16	26	17	1.91
31620970--31621134	26	6.4	26	70	5	93	43	15	23	18	1.88
31621012--31621118	52	2.1	52	87	0	151	43	14	23	18	1.86
31621021--31621134	52	2.2	52	80	0	138	44	14	21	18	1.86
31620969--31621134	78	2.2	77	78	8	194	42	15	22	18	1.88
31623149--31623229	24	3.5	24	75	14	89	38	3	28	29	1.74
31623176--31623246	22	3.1	22	67	15	63	32	7	28	32	1.84
31623153--31623246	46	2.0	46	93	0	161	34	5	28	31	1.80
31638607--31638656	23	2.3	23	86	6	68	54	4	0	42	1.19
31638901--31638933	7	5.0	7	92	7	52	15	15	0	69	1.19
31638894--31638933	19	2.1	19	85	0	53	20	17	0	62	1.33
31638906--31639035	57	2.3	57	84	10	160	25	16	6	51	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31649841--31649892	22	2.4	22	100	0	104	3	44	26	25	1.71
31652903--31653089	93	2.0	93	97	0	356	33	13	19	32	1.91
31654379--31654417	20	2.0	20	94	0	69	43	20	7	28	1.79
31655233--31655310	41	1.9	41	100	0	156	34	12	12	39	1.82
31656202--31656242	17	2.4	18	80	11	52	58	0	4	36	1.20
31661518--31661616	45	2.2	45	90	0	153	33	15	25	26	1.95
31661605--31661677	19	3.8	19	83	0	92	27	16	31	24	1.96
31661661--31661755	26	3.7	26	83	8	104	26	16	26	30	1.97
31671211--31671310	21	4.8	21	76	17	93	8	5	17	70	1.30
31671224--31671310	20	4.2	20	72	21	56	9	4	14	71	1.28
31671293--31671392	12	8.1	12	74	10	67	5	6	22	67	1.33
31671331--31671385	28	2.0	28	85	0	74	7	7	18	67	1.38
31671901--31671933	16	2.0	17	88	5	50	54	0	0	45	0.99
31673350--31673380	11	2.8	11	95	0	53	0	22	3	74	0.96
31674659--31674700	22	1.9	22	90	0	66	26	21	9	42	1.83
31674675--31674780	40	2.7	40	75	10	108	20	21	14	43	1.87
31686628--31686681	21	2.6	21	75	16	58	35	27	11	25	1.90
31701638--31701719	39	2.0	41	86	6	114	24	10	1	63	1.34
31701970--31702010	18	2.3	18	95	0	73	48	31	9	9	1.69
31705654--31705687	16	2.1	17	88	5	52	61	0	2	35	1.11
31713971--31714017	16	2.9	16	90	0	76	40	0	23	36	1.55
31714299--31714359	15	3.9	15	72	16	52	39	1	3	55	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31716780--31716840	30	2.0	30	96	0	113	24	8	16	50	1.72
31719646--31719715	22	3.2	22	100	0	140	40	8	12	38	1.74
31720282--31720323	20	2.1	20	100	0	84	30	14	23	30	1.94
31722543--31722612	34	2.1	34	97	0	131	52	8	24	14	1.69
31749397--31749588	51	3.8	51	90	0	276	30	23	13	32	1.93
31754541--31754588	3	15.7	3	81	12	53	70	0	0	29	0.87
31754540--31754589	7	7.4	7	79	20	54	72	0	0	28	0.86
31755635--31755673	7	5.6	7	82	11	53	33	25	25	15	1.95
31758817--31759053	51	4.6	51	86	3	280	30	24	13	31	1.94
31758817--31759053	101	2.3	103	83	3	282	30	24	13	31	1.94
31761914--31762106	101	1.9	101	94	0	341	38	16	12	32	1.86
31763477--31763510	13	2.5	13	90	4	50	0	11	17	70	1.16
31763913--31763964	15	3.4	15	71	23	54	59	26	0	13	1.34
31763902--31763964	31	2.0	31	96	0	117	60	26	0	12	1.33
31769828--31769891	27	2.4	27	86	2	85	51	6	3	39	1.43
31774542--31774596	28	2.0	28	88	0	83	29	12	30	27	1.93
31782372--31782413	17	2.4	17	92	4	66	23	26	2	47	1.64
31787747--31787788	17	2.4	17	92	4	66	23	26	2	47	1.64
31788696--31788838	74	1.9	74	88	5	218	51	10	8	29	1.65
31790523--31790618	41	2.3	41	96	0	174	35	29	7	28	1.84
31790608--31790646	17	2.3	17	90	0	60	46	25	12	15	1.81
31793661--31793693	15	2.3	15	94	5	59	12	21	12	54	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31801676--31801775	47	2.1	47	94	1	175	32	9	29	30	1.88
31802042--31802088	24	1.9	25	86	4	69	29	10	23	36	1.89
31802497--31802547	5	10.4	5	83	12	61	58	3	0	37	1.16
31803302--31803369	22	3.0	22	74	17	68	54	2	1	41	1.24
31813194--31813317	17	7.2	17	63	18	51	26	20	23	29	1.98
31813195--31813317	34	3.6	34	79	10	151	26	20	23	29	1.99
31813464--31813592	43	3.0	43	87	1	170	27	29	17	25	1.98
31820315--31820536	41	5.3	42	80	5	209	22	26	25	24	2.00
31820333--31820523	41	4.6	41	82	1	211	23	28	25	23	2.00
31820339--31820535	82	2.4	82	84	1	241	22	28	25	23	1.99
31820505--31820558	25	2.2	25	83	3	74	18	31	22	27	1.97
31820459--31820599	66	2.2	65	85	1	192	21	29	26	23	1.99
31820428--31820634	107	1.9	106	87	2	299	21	28	27	22	1.99
31820382--31820681	148	2.0	147	86	3	424	22	29	27	21	1.99
31820535--31820782	82	3.0	82	89	5	360	22	27	28	20	1.99
31820381--31820722	189	1.8	187	87	4	508	21	29	27	21	1.99
31820535--31820782	41	6.1	40	85	5	309	22	27	28	20	1.99
31822734--31822984	127	2.0	126	84	7	330	28	30	1	39	1.65
31822862--31823044	53	3.4	53	82	8	185	26	33	2	37	1.69
31822902--31823066	53	3.1	53	82	6	165	24	29	2	43	1.67
31827356--31828006	262	2.5	263	80	7	670	33	12	11	41	1.80
31833681--31833717	19	1.9	19	88	0	56	16	13	21	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31833952--31834026	33	2.3	34	88	4	109	40	2	8	49	1.46
31833952--31834037	33	2.6	33	83	10	97	40	3	8	47	1.50
31841551--31841604	28	1.9	28	92	0	90	33	9	29	27	1.88
31845713--31845837	59	2.1	59	96	0	232	8	17	8	66	1.42
31845736--31845835	34	3.2	33	64	24	81	9	16	8	67	1.41
31854491--31854543	25	2.0	27	85	7	74	56	3	9	30	1.49
31856881--31856919	17	2.3	17	86	0	51	23	0	5	71	1.05
31856923--31856975	24	2.2	23	78	15	54	16	1	9	71	1.21
31857951--31858024	31	2.4	31	86	2	105	29	22	21	25	1.99
31858231--31858310	25	3.0	26	72	17	76	32	1	1	65	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171