genome.fa.s3.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  134  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41687353--41687449	17	5.8	17	86	4	117	45	1	3	50	1.24
41687345--41687369	12	2.1	12	100	0	50	40	8	0	52	1.31
41687368--41687453	11	7.8	11	73	10	68	43	0	3	53	1.18
41687361--41687458	6	17.3	6	70	18	68	43	0	4	52	1.20
41687361--41687489	17	7.6	17	79	13	115	45	0	3	50	1.20
41689005--41689088	30	2.9	29	81	11	86	36	26	1	35	1.64
41689047--41689292	58	4.3	57	82	7	275	33	29	3	33	1.75
41689044--41689256	29	7.4	29	68	25	114	33	29	3	33	1.74
41689047--41689293	117	2.1	115	90	2	388	33	29	3	33	1.75
41700939--41701006	33	2.1	33	100	0	136	27	11	17	42	1.84
41700972--41701581	92	6.6	92	96	0	1112	33	13	16	36	1.88
41701848--41701924	17	4.5	17	90	0	109	42	1	3	51	1.28
41701840--41701864	12	2.1	12	100	0	50	40	8	0	52	1.31
41701856--41701953	6	16.3	6	69	18	62	42	0	5	52	1.23
41701863--41701948	11	7.8	11	73	12	61	41	0	4	53	1.21
41701907--41701983	17	4.6	17	74	16	63	44	0	5	50	1.24
41701928--41701982	18	3.1	18	81	2	58	45	0	3	50	1.19
41703580--41703825	58	4.3	59	85	8	337	31	31	4	32	1.78
41703513--41703787	30	9.4	29	72	21	127	33	30	4	32	1.76
41703580--41703831	117	2.2	115	94	3	452	30	32	4	31	1.79
41703607--41703832	29	7.8	28	68	26	123	30	32	4	31	1.79
41704760--41704800	15	2.8	15	75	17	50	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41708973--41709137	76	2.2	76	81	5	183	29	10	16	43	1.82
41713192--41713291	23	4.4	23	85	1	139	20	20	11	49	1.78
41713192--41713291	46	2.2	46	90	1	157	20	20	11	49	1.78
41714267--41714321	21	2.4	23	85	8	69	38	27	10	23	1.88
41714845--41714962	59	2.0	61	86	6	170	31	22	13	33	1.92
41714911--41715096	52	3.6	52	85	3	232	32	24	15	27	1.95
41715958--41716001	20	2.1	21	83	4	54	36	13	2	47	1.56
41719178--41719239	23	2.7	23	84	0	88	17	20	12	48	1.80
41720121--41720184	31	2.1	31	100	0	128	31	12	12	43	1.80
41723790--41723892	38	2.8	37	79	7	93	36	3	1	57	1.28
41723838--41723897	18	3.2	18	77	11	59	36	0	0	63	0.95
41728395--41728452	21	2.8	21	84	5	73	29	22	13	34	1.93
41729168--41729411	52	4.7	52	88	1	319	32	23	14	29	1.94
41729166--41729411	104	2.4	104	89	2	370	32	23	14	29	1.94
41735673--41735730	21	2.8	21	78	0	53	32	22	10	34	1.88
41736375--41736537	52	2.9	57	77	14	167	31	23	13	31	1.93
41736429--41736556	52	2.5	52	94	0	220	33	24	11	30	1.91
41736572--41736627	16	3.5	16	90	0	94	37	7	26	28	1.83
41736797--41736942	58	2.5	56	82	11	179	50	1	2	46	1.21
41737616--41737666	26	2.0	26	100	0	102	19	23	15	41	1.90
41738987--41739026	15	2.7	15	92	0	71	55	12	20	12	1.69
41743376--41743404	4	7.2	4	100	0	58	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41744550--41744589	12	3.3	12	89	0	53	72	17	2	7	1.19
41744585--41744633	21	2.3	21	82	0	62	63	14	6	16	1.49
41755585--41756038	30	15.6	27	71	14	221	34	4	26	35	1.77
41755584--41756038	58	7.8	56	74	11	276	34	4	26	35	1.77
41755664--41756038	88	4.3	86	79	8	368	33	4	26	35	1.77
41757622--41757665	15	2.9	15	93	0	79	27	13	45	13	1.81
41757708--41757739	11	2.9	11	95	0	55	25	12	37	25	1.91
41757721--41757754	13	2.8	13	91	8	54	23	20	32	23	1.98
41757827--41757878	14	3.7	14	86	0	59	25	3	23	48	1.68
41758347--41758888	98	5.5	99	83	3	673	17	24	19	38	1.93
41758414--41758884	49	9.6	50	69	13	192	17	25	18	38	1.92
41758347--41758888	196	2.8	196	85	5	761	17	24	19	38	1.93
41759313--41759343	15	2.1	15	93	0	53	58	6	12	22	1.58
41765838--41765879	14	3.0	14	89	0	57	26	4	21	47	1.70
41766137--41766284	30	5.0	30	75	8	106	35	2	26	35	1.71
41766154--41766276	30	4.1	30	77	8	117	32	3	25	39	1.72
41767082--41767107	4	6.5	4	100	0	52	50	23	0	26	1.50
41768002--41768090	47	1.9	47	90	2	144	24	15	23	35	1.94
41768028--41768492	42	11.3	41	81	7	473	26	17	26	30	1.97
41768075--41768492	82	5.1	82	87	2	544	26	17	26	29	1.97
41768587--41769075	99	4.9	99	83	1	550	18	31	15	34	1.93
41768586--41769075	50	9.9	49	70	11	250	18	31	16	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41774978--41775138	30	5.4	30	79	8	134	37	2	21	38	1.67
41775094--41775163	30	2.3	30	83	7	88	31	8	24	35	1.85
41777486--41777525	3	13.3	3	100	0	80	32	0	0	67	0.91
41780617--41780671	26	2.2	26	83	3	67	61	3	3	30	1.30
41780893--41780918	12	2.2	12	100	0	52	50	0	0	50	1.00
41784522--41784565	19	2.3	19	88	7	63	34	0	25	40	1.56
41784543--41784665	60	2.0	60	93	0	210	36	4	18	40	1.70
41784543--41784665	30	4.1	30	84	6	160	36	4	18	40	1.70
41785434--41785476	17	2.5	17	80	0	59	48	13	9	27	1.73
41786510--41786586	33	2.3	33	82	6	84	50	3	6	38	1.47
41786516--41786567	17	3.1	17	80	5	52	53	3	5	36	1.43
41786680--41786771	46	2.0	46	100	0	184	36	10	10	41	1.75
41788967--41789028	18	3.4	18	75	4	54	58	0	8	33	1.28
41795022--41795072	27	1.9	27	96	4	95	9	15	9	64	1.48
41799947--41800039	36	2.6	36	85	0	123	36	24	16	22	1.94
41802866--41803255	197	2.0	194	82	7	468	47	6	2	43	1.42
41803646--41803707	27	2.3	26	76	10	63	33	3	0	62	1.11
41803758--41803814	26	2.2	25	87	9	80	33	1	7	57	1.36
41804957--41805001	17	2.5	17	85	7	54	35	4	0	60	1.17
41805312--41805354	2	21.5	2	100	0	86	48	0	0	51	1.00
41805417--41805472	25	2.2	25	78	15	62	35	1	5	57	1.32
41826670--41826859	52	3.7	52	92	1	310	34	24	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41831613--41831639	11	2.5	11	100	0	54	55	0	0	44	0.99
41832186--41832224	19	2.1	19	100	0	78	48	25	15	10	1.76
41850885--41850941	20	2.6	21	83	10	71	29	8	19	42	1.81
41856967--41857046	17	4.4	18	80	12	92	36	3	1	58	1.24
41856967--41857046	37	2.2	35	88	4	115	36	3	1	58	1.24
41858874--41859088	30	7.2	29	70	13	125	36	23	2	37	1.68
41858927--41859351	59	7.2	58	75	10	305	34	23	3	38	1.72
41858927--41859351	118	3.6	117	78	8	391	34	23	3	38	1.72
41858888--41859146	30	8.9	27	70	16	110	36	23	1	38	1.66
41859423--41859497	28	2.6	28	76	16	73	40	25	1	33	1.64
41859219--41859501	146	1.9	145	82	7	349	32	25	6	35	1.81
41863707--41863829	43	2.9	43	87	2	167	26	17	30	25	1.98
41864363--41864465	55	1.9	53	82	4	125	20	16	35	27	1.94
41865661--41865729	33	2.1	32	86	2	93	39	2	18	39	1.66
41867096--41867275	42	4.3	43	81	6	199	23	25	11	40	1.87
41867096--41867275	84	2.1	84	83	7	222	23	25	11	40	1.87
41869631--41869682	26	2.0	26	100	0	104	19	26	19	34	1.95
41873075--41873121	24	2.1	24	84	11	64	29	21	6	42	1.77
41877940--41878014	35	2.1	36	95	2	134	41	8	8	42	1.63
41877957--41878014	19	3.2	19	68	22	61	39	6	10	43	1.66
41889112--41889147	3	12.3	3	94	5	65	69	0	0	30	0.89
41890193--41890234	20	2.1	20	95	0	75	40	23	21	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41890197--41890250	14	3.9	14	78	4	56	35	31	20	12	1.90
41890196--41890235	7	5.9	7	82	5	55	35	27	22	15	1.94
41890327--41890362	15	2.4	15	90	0	54	25	2	27	44	1.68
41890342--41890385	21	2.0	22	95	4	81	25	0	29	45	1.54
41890756--41890830	11	6.5	11	73	14	62	69	0	25	5	1.09
41890756--41890828	23	3.1	23	75	11	67	69	0	24	5	1.09
41891330--41891390	18	3.4	18	80	8	79	34	27	18	19	1.95
41891330--41891410	36	2.2	36	82	0	90	35	27	16	20	1.94
41895213--41895273	32	1.9	32	96	0	113	32	14	8	44	1.75
41903350--41903559	53	3.9	53	81	5	210	20	13	35	30	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171