genome.fa.s3.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  113  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36172061--36172109	16	3.0	17	79	5	57	77	0	18	4	0.92
36174705--36174881	72	2.5	72	87	2	259	56	13	5	24	1.59
36175306--36175357	18	2.9	18	91	0	86	36	11	13	38	1.81
36176365--36176397	15	2.2	15	100	0	66	15	18	12	54	1.71
36182213--36182263	4	13.0	4	76	19	54	72	3	0	23	1.01
36182201--36182271	26	2.8	25	80	16	83	70	4	0	25	1.05
36182215--36182272	16	3.8	16	79	4	57	74	5	0	20	1.01
36182213--36182282	26	2.7	25	84	10	79	74	4	1	20	1.07
36182215--36182281	30	2.2	29	82	15	75	74	4	1	19	1.07
36184680--36184733	28	2.0	27	81	3	63	46	14	18	20	1.84
36184903--36184927	13	1.9	13	100	0	50	24	0	20	56	1.43
36184941--36185002	20	3.0	20	77	13	65	61	4	1	32	1.27
36185841--36185996	30	5.2	30	85	6	192	36	24	2	36	1.69
36185827--36185996	60	2.8	59	84	4	225	36	24	2	36	1.69
36185838--36186092	90	2.8	90	74	8	209	36	25	3	34	1.72
36190175--36190220	24	2.0	23	82	4	56	52	10	21	15	1.73
36198089--36198753	39	17.0	39	73	11	443	23	32	19	24	1.97
36198073--36198787	78	9.2	78	78	7	538	24	32	19	24	1.97
36199334--36199375	21	2.0	21	85	0	57	59	4	2	33	1.31
36200937--36201071	30	4.5	30	88	0	155	37	25	1	35	1.65
36200937--36201071	60	2.3	60	84	3	175	37	25	1	35	1.65
36201036--36201156	29	4.2	29	73	4	84	37	24	4	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36203888--36203946	31	1.9	31	85	0	82	37	11	15	35	1.84
36203912--36204006	32	3.2	29	79	8	93	42	17	12	27	1.86
36203951--36204006	29	2.0	29	89	3	87	42	19	10	26	1.84
36205629--36205958	143	2.3	141	85	2	448	27	20	20	31	1.97
36205950--36206058	36	3.0	35	86	5	137	26	23	15	33	1.95
36207049--36207148	23	4.2	23	80	11	103	34	26	19	21	1.96
36207057--36207197	47	2.9	48	84	5	160	29	26	20	23	1.99
36207056--36207197	24	5.9	24	84	5	162	29	26	20	23	1.99
36207179--36207273	27	3.5	27	82	1	100	30	23	16	29	1.96
36209034--36209284	109	2.3	110	80	6	276	28	24	13	32	1.94
36209034--36209284	74	3.4	74	80	8	273	28	24	13	32	1.94
36209034--36209303	36	7.4	35	77	8	252	28	25	14	32	1.94
36211317--36211509	94	2.1	94	91	2	307	19	9	19	52	1.72
36211714--36211748	2	18.0	2	94	5	63	48	0	0	51	1.00
36212080--36212408	74	4.4	74	85	4	387	26	23	14	36	1.93
36212082--36212408	38	8.8	38	80	9	354	26	23	14	36	1.92
36212084--36212393	147	2.1	148	85	4	412	26	23	13	36	1.92
36216587--36216793	39	5.3	39	71	10	147	36	21	18	23	1.95
36216571--36216799	77	3.0	78	80	7	270	36	21	17	23	1.95
36226668--36226709	22	1.9	22	90	0	66	69	11	7	11	1.37
36228170--36228220	25	2.0	25	92	0	84	49	11	23	15	1.78
36231927--36232001	6	12.7	6	75	18	68	41	0	4	54	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36231927--36232010	17	5.2	17	83	13	106	40	0	4	54	1.21
36231939--36231996	30	1.9	30	100	0	116	44	0	3	51	1.18
36232714--36232785	3	24.0	3	78	10	76	59	1	0	38	1.06
36233751--36233883	29	4.5	30	74	16	109	33	25	4	36	1.76
36241658--36241900	57	4.4	54	76	15	207	37	4	27	30	1.75
36241734--36241884	29	5.3	27	71	21	96	39	4	29	27	1.76
36241734--36241910	58	3.1	57	85	8	250	38	5	28	27	1.78
36241735--36242132	30	13.7	29	72	16	134	40	3	23	32	1.71
36241735--36241917	57	3.2	55	86	8	242	38	4	27	28	1.77
36241930--36242231	30	10.1	29	79	7	275	42	2	19	35	1.64
36241927--36242216	60	4.8	60	84	4	309	42	2	18	36	1.64
36244325--36244406	17	4.8	17	79	8	103	56	4	0	39	1.21
36244324--36244373	11	4.5	11	76	11	50	54	4	0	42	1.19
36244314--36244406	35	2.7	35	83	6	109	52	4	1	41	1.28
36244328--36244374	6	8.2	6	79	9	53	51	4	0	44	1.21
36244763--36245420	92	7.2	92	96	0	1208	32	16	16	34	1.92
36245549--36245842	50	5.9	49	67	18	153	14	25	22	37	1.92
36245637--36245834	96	2.0	98	91	3	319	15	26	22	34	1.94
36245928--36245952	13	1.9	13	100	0	50	56	0	16	28	1.41
36251250--36251357	29	3.7	29	70	13	78	41	2	25	30	1.69
36251218--36251495	58	4.8	58	77	8	194	38	3	26	30	1.75
36251280--36251469	57	3.3	56	83	6	186	38	3	26	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36251479--36251679	30	6.9	29	76	7	122	42	3	21	31	1.70
36251543--36251678	60	2.3	59	81	6	143	44	4	18	32	1.69
36253785--36253876	17	5.4	17	80	6	105	51	3	1	44	1.25
36253816--36253865	11	4.3	12	75	10	50	52	6	0	42	1.26
36255162--36255187	4	6.5	4	100	0	52	0	0	23	76	0.78
36255262--36255323	28	2.2	28	85	0	79	59	11	4	24	1.51
36263406--36263510	23	4.6	23	85	0	129	34	4	12	48	1.62
36268558--36268643	39	2.2	39	93	2	147	23	27	16	32	1.96
36268558--36268648	19	4.7	19	82	2	110	23	28	17	30	1.97
36271560--36271600	20	2.0	21	86	13	59	48	19	9	21	1.77
36283596--36284110	39	13.0	41	71	13	296	25	17	25	31	1.97
36283591--36283984	160	2.5	156	83	6	454	25	17	24	32	1.96
36283632--36284003	78	4.7	78	76	10	339	25	17	25	32	1.97
36283632--36284103	116	4.0	116	76	10	438	25	17	25	31	1.97
36283753--36284110	194	1.8	196	87	2	533	25	18	26	30	1.98
36284122--36284244	51	2.4	51	90	0	192	36	21	13	29	1.91
36284771--36284816	20	2.3	20	100	0	92	43	8	19	28	1.80
36292645--36292689	21	2.1	21	91	0	72	15	26	20	37	1.92
36294370--36294415	25	1.9	23	86	8	65	56	4	4	34	1.39
36296428--36296501	6	13.4	5	84	10	60	74	4	5	16	1.16
36296519--36296557	10	3.7	10	80	12	51	17	10	2	69	1.28
36300510--36300555	24	1.9	23	86	8	65	56	6	4	32	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36303878--36303921	21	2.1	21	100	0	88	36	22	9	31	1.86
36305536--36305577	7	5.7	7	79	20	50	66	0	2	30	1.04
36305533--36305577	14	3.0	15	90	6	65	66	0	2	31	1.04
36313842--36313884	20	2.2	20	83	8	52	18	23	4	53	1.63
36315356--36315407	18	2.6	21	76	17	65	17	11	11	59	1.60
36323203--36323307	23	4.6	23	84	0	129	34	4	13	47	1.64
36328515--36328554	21	1.9	21	84	0	53	72	5	10	12	1.26
36330943--36330990	4	11.5	4	83	16	62	75	0	4	20	0.97
36332175--36332218	21	2.1	21	82	0	52	31	15	11	40	1.83
36333761--36333820	22	2.8	22	82	7	61	73	3	8	15	1.20
36345146--36345186	21	2.0	21	85	9	57	56	7	4	31	1.48
36359845--36359929	32	2.7	29	76	15	73	48	8	15	28	1.73
36359860--36359930	32	2.2	32	82	12	83	50	7	16	25	1.70
36360130--36360181	20	2.4	22	75	21	56	55	0	5	38	1.24
36365815--36365865	11	4.5	11	78	11	59	41	1	0	56	1.10
36365815--36365864	6	8.8	6	78	12	52	42	2	0	56	1.11
36365807--36365865	17	3.5	17	86	4	75	42	1	0	55	1.09
36365807--36365887	22	3.6	22	77	12	69	44	2	0	53	1.14
36366516--36366548	17	1.9	17	93	0	57	57	3	0	39	1.14
36366521--36366588	29	2.3	30	76	16	70	52	7	1	38	1.38
36366903--36366944	20	2.1	20	90	0	66	28	21	45	4	1.72
36367296--36367633	162	2.1	162	95	0	604	25	17	13	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36367746--36367842	29	3.3	28	75	21	92	30	29	5	34	1.79
36367707--36367875	30	5.8	29	67	26	97	31	27	4	36	1.78
36367707--36367885	58	3.0	59	87	2	243	32	27	4	35	1.77
36367887--36368083	58	3.3	59	88	3	299	31	27	3	37	1.72
36367881--36368075	59	3.3	58	89	3	293	32	28	3	35	1.75
36367707--36368255	215	2.6	215	88	2	809	31	27	4	36	1.77
36368064--36368138	38	2.0	38	89	0	114	29	26	6	37	1.82
36368102--36368236	58	2.3	59	82	7	175	29	26	2	40	1.71
36368137--36368237	28	3.5	28	70	23	77	31	25	1	40	1.67
36368102--36368258	58	2.7	58	76	8	174	29	26	3	39	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171