genome.fa.s3.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  157  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46871853--46871883	15	2.1	15	100	0	62	12	12	54	19	1.70
46872068--46872158	17	5.5	17	76	10	91	48	4	1	46	1.29
46872068--46872158	6	15.5	6	71	13	73	48	4	1	46	1.29
46872492--46873231	68	10.9	68	96	0	1338	26	20	19	33	1.96
46872492--46873231	273	2.7	272	95	0	1329	26	20	19	33	1.96
46872492--46873231	205	3.6	205	96	0	1349	26	20	19	33	1.96
46885117--46885270	30	5.2	29	75	16	156	34	3	30	31	1.76
46885110--46885305	58	3.4	57	86	8	261	32	4	32	31	1.77
46885280--46885608	30	11.0	30	89	3	450	35	2	24	37	1.68
46886405--46886459	23	2.4	23	96	0	101	29	25	20	25	1.99
46886711--46886740	12	2.5	12	88	0	51	40	0	3	56	1.16
46887416--46887507	17	5.5	17	72	12	84	48	4	1	45	1.29
46887416--46887507	6	15.5	6	73	10	82	48	4	1	45	1.29
46888789--46888863	31	2.5	28	89	8	105	52	0	4	44	1.20
46888772--46888863	6	15.2	6	76	15	91	47	0	4	47	1.21
46888805--46888855	11	4.8	11	76	9	52	52	0	5	41	1.25
46888799--46888871	17	4.5	17	83	11	91	52	1	4	42	1.29
46888792--46888880	37	2.3	38	84	7	110	49	2	3	44	1.31
46892083--46892132	21	2.3	21	83	10	57	26	2	4	68	1.18
46902575--46902678	55	1.9	54	92	3	174	17	15	38	28	1.90
46902543--46902747	96	2.1	96	84	3	277	16	14	39	29	1.89
46902628--46902721	41	2.2	41	83	3	116	17	13	39	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46903177--46903287	40	2.8	39	78	5	114	38	22	16	22	1.92
46903386--46903458	29	2.5	29	86	0	110	26	10	16	46	1.80
46905633--46905878	55	4.5	53	81	6	233	20	15	34	28	1.93
46905695--46905881	53	3.5	53	81	7	189	19	15	35	29	1.93
46906497--46906679	29	6.3	29	79	0	186	23	11	20	44	1.83
46906492--46906679	87	2.2	87	95	0	331	23	11	19	44	1.84
46912662--46912732	28	2.5	28	82	11	74	35	0	1	63	1.03
46920003--46920245	30	8.2	30	88	2	303	38	24	0	36	1.61
46922475--46922573	46	2.2	46	90	0	153	30	6	15	48	1.69
46922572--46922596	13	1.9	13	100	0	50	44	0	8	48	1.32
46923930--46924188	60	4.3	59	81	4	279	38	11	1	47	1.52
46923928--46924197	90	3.0	89	81	5	269	38	12	2	46	1.54
46923930--46924199	30	9.0	29	80	8	229	38	12	2	46	1.55
46924257--46924304	24	2.0	25	83	4	62	20	8	4	66	1.35
46925470--46925593	34	3.6	34	80	8	144	36	8	12	42	1.73
46925490--46925593	32	3.1	32	82	8	127	36	6	13	43	1.71
46925488--46925593	36	3.1	36	83	8	148	36	6	13	43	1.70
46926046--46926071	13	2.0	13	100	0	52	38	0	0	61	0.96
46930776--46930842	24	2.8	24	79	6	64	37	20	13	28	1.91
46930850--46930928	24	3.3	24	76	1	88	32	16	17	32	1.93
46930917--46930956	13	2.9	14	81	3	55	27	17	27	27	1.98
46933555--46933615	24	2.5	24	89	0	95	32	16	21	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46933851--46933880	16	1.9	16	93	6	53	26	13	30	30	1.94
46934689--46935097	41	10.1	41	82	5	383	32	20	29	18	1.96
46934760--46935097	158	2.1	160	85	5	450	31	20	29	18	1.96
46937056--46937104	20	2.5	20	100	0	98	24	6	20	48	1.72
46943727--46944333	49	12.5	49	73	9	280	23	23	16	36	1.94
46943932--46944281	97	3.6	97	82	6	363	22	24	17	35	1.95
46943707--46944165	244	1.9	244	81	6	572	23	23	15	37	1.93
46945877--46946020	67	2.1	67	85	3	191	9	23	10	56	1.61
46958578--46958611	3	11.3	3	100	0	68	32	0	0	67	0.91
46959872--46960015	72	2.0	72	100	0	288	27	20	19	31	1.97
46968650--46968807	57	2.8	57	92	0	246	31	16	14	37	1.89
46969349--46969393	21	2.1	21	83	4	54	44	11	0	44	1.39
46970272--46970302	16	1.9	16	93	0	53	41	9	0	48	1.36
46971121--46971169	23	2.1	23	88	0	71	48	4	12	34	1.59
46979456--46979603	75	2.0	75	94	0	260	32	13	11	42	1.80
46979677--46979717	21	2.0	21	85	9	57	63	0	0	36	0.95
46980920--46981010	30	2.9	31	83	4	112	5	5	21	67	1.33
46981594--46981631	19	2.0	19	100	0	76	52	5	5	36	1.47
46990073--46990138	34	1.9	34	85	11	91	34	12	13	39	1.82
46994499--46994549	24	2.1	24	96	0	93	25	11	7	54	1.63
46994499--46994561	24	2.6	24	89	0	81	26	14	9	49	1.74
46996482--46996544	24	2.6	24	87	0	90	25	14	11	49	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46999086--46999279	60	3.3	55	88	9	257	32	2	34	30	1.70
46999109--46999257	29	5.1	29	66	15	101	31	2	36	29	1.69
46999107--46999283	60	3.0	58	90	6	261	31	2	34	31	1.70
46999132--46999283	29	5.2	28	64	16	78	32	1	33	32	1.69
46999262--46999400	60	2.3	60	86	3	190	37	3	19	39	1.69
46999268--46999399	30	4.4	30	81	4	160	36	3	18	40	1.69
47001407--47001510	6	18.0	6	71	18	78	54	1	1	41	1.22
47001407--47001498	17	5.7	16	83	11	116	55	1	2	41	1.19
47001409--47001504	31	3.4	28	81	9	88	56	1	2	40	1.18
47001947--47002467	31	15.4	31	66	18	184	28	20	16	34	1.94
47001903--47002506	68	8.9	68	94	0	1028	28	20	16	34	1.94
47001828--47002508	136	4.9	136	91	2	1049	29	20	16	33	1.94
47001828--47002506	204	3.3	204	92	2	1072	29	20	16	34	1.94
47014201--47014394	60	3.3	56	85	9	241	32	2	33	31	1.72
47014306--47014398	29	3.1	29	67	11	80	29	2	33	35	1.70
47014367--47014627	60	4.4	59	82	8	226	36	1	21	40	1.64
47014327--47014614	90	3.2	88	79	9	291	36	2	23	38	1.67
47014383--47014642	90	2.9	90	86	4	357	37	2	20	40	1.65
47014383--47014614	30	7.8	31	84	8	252	37	2	20	40	1.65
47016642--47016745	6	18.0	6	69	18	69	53	2	1	41	1.26
47016642--47016733	17	5.7	16	81	11	107	54	2	2	41	1.25
47016644--47016739	31	3.4	28	76	12	79	55	2	2	40	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47022240--47022281	19	2.2	19	83	8	50	40	2	14	42	1.58
47023206--47023268	16	3.2	22	62	29	59	46	6	11	36	1.65
47023208--47023271	21	3.3	21	64	28	59	46	6	10	35	1.64
47023200--47023272	37	2.0	37	97	0	137	43	5	10	39	1.63
47036272--47036317	24	1.9	24	86	0	65	56	6	10	26	1.58
47038768--47038811	23	1.9	23	86	9	63	54	6	11	27	1.61
47044603--47044766	29	5.2	29	62	21	80	28	26	15	29	1.96
47044627--47044737	35	3.3	35	65	19	101	25	29	12	32	1.93
47044604--47044795	64	3.0	64	99	0	375	28	27	14	30	1.95
47054673--47054706	16	2.1	17	89	10	54	58	0	0	41	0.98
47057026--47057110	7	12.1	7	97	0	116	29	5	27	37	1.80
47057112--47057175	27	2.4	26	82	12	76	15	1	29	53	1.52
47057131--47057307	14	12.6	14	67	13	60	14	1	27	56	1.46
47057131--47057192	33	1.9	32	83	9	81	11	0	25	62	1.28
47057190--47057247	27	2.1	27	83	0	71	15	1	27	55	1.50
47057358--47057460	14	7.2	14	77	7	73	18	1	20	59	1.48
47057386--47057425	22	1.9	21	85	10	55	17	0	15	67	1.23
47057398--47057462	29	2.2	30	83	2	78	13	0	24	61	1.32
47057558--47057659	40	2.5	40	84	3	116	18	3	22	54	1.59
47062305--47062389	40	2.2	40	89	2	127	37	12	17	31	1.88
47064093--47064157	29	2.2	29	78	13	71	52	9	7	30	1.61
47071233--47071266	11	3.1	11	82	0	50	26	0	2	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47073812--47073893	43	1.9	43	84	0	110	41	8	20	29	1.82
47080170--47080211	19	2.2	19	87	8	59	28	0	4	66	1.12
47082133--47082163	5	6.2	5	92	0	53	77	0	19	3	0.90
47082874--47082898	11	2.3	11	100	0	50	8	0	16	76	1.02
47084200--47084244	22	2.0	22	83	8	56	37	0	0	62	0.96
47084291--47084325	17	2.0	18	88	5	54	40	0	0	60	0.97
47085142--47085183	11	3.9	11	78	3	50	35	0	0	64	0.94
47086344--47086377	15	2.2	16	89	5	52	20	0	8	70	1.13
47095266--47095315	26	1.9	26	87	0	73	20	16	16	48	1.82
47102473--47102510	18	2.1	18	85	9	51	34	2	7	55	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171