genome.fa.s3.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  152  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45679308--45679369	27	2.3	27	81	10	74	66	1	1	30	1.11
45679361--45679464	46	2.3	48	78	13	112	66	1	6	25	1.26
45679408--45679464	28	2.1	27	86	3	78	70	1	3	24	1.13
45679445--45679502	22	2.6	22	73	10	64	67	5	1	25	1.21
45682869--45682908	21	1.9	21	89	0	62	30	20	20	30	1.97
45683062--45683101	21	1.9	21	94	0	71	25	17	27	30	1.97
45684669--45684713	16	2.8	17	83	10	58	35	8	0	55	1.31
45684676--45684713	17	2.2	18	81	13	53	36	7	0	55	1.29
45685043--45685074	6	5.3	6	100	0	64	34	34	0	31	1.58
45685041--45685082	18	2.3	19	80	12	52	35	38	0	26	1.57
45686796--45686850	19	2.9	18	75	20	58	34	0	7	58	1.26
45691993--45692033	20	2.0	20	100	0	82	36	29	0	34	1.58
45691996--45692039	20	2.2	20	91	0	70	36	29	0	34	1.58
45693598--45693626	2	15.0	2	92	7	51	48	0	0	51	1.00
45693695--45693761	30	2.2	31	84	10	93	28	14	5	50	1.66
45695581--45695681	28	3.5	29	71	16	93	37	0	27	34	1.57
45695661--45695896	30	7.8	31	80	6	256	33	3	22	40	1.71
45696911--45696940	13	2.3	13	94	0	51	43	0	0	56	0.99
45697664--45697733	29	2.4	29	80	4	70	51	2	4	41	1.36
45697680--45697731	12	4.4	12	80	4	61	53	1	1	42	1.23
45697701--45697744	17	2.7	16	82	6	61	56	0	2	40	1.11
45700458--45700517	29	2.0	30	93	3	104	28	1	11	58	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45700560--45700620	25	2.7	20	71	24	50	31	1	4	62	1.26
45700600--45700625	9	2.9	9	100	0	52	34	0	0	65	0.93
45701720--45701764	19	2.4	19	81	7	56	37	0	4	57	1.19
45702567--45702596	16	1.9	16	93	6	53	13	13	3	70	1.30
45702562--45702622	22	2.8	22	85	7	72	13	11	3	72	1.24
45704210--45704361	58	2.6	57	80	10	173	37	5	24	32	1.79
45704202--45704301	28	3.5	27	71	20	87	38	3	24	35	1.71
45704197--45704389	28	6.7	27	68	16	86	35	6	26	31	1.81
45704347--45704600	30	8.7	29	69	17	107	35	3	25	36	1.72
45704347--45704594	29	8.4	29	75	10	175	34	3	25	37	1.72
45704347--45704635	59	4.9	58	71	14	191	34	3	24	36	1.74
45704364--45704634	29	9.2	29	73	14	157	34	4	25	36	1.75
45705483--45705518	9	4.0	9	85	0	54	47	2	0	50	1.15
45706139--45706224	6	15.0	6	69	13	65	51	1	2	45	1.21
45706139--45706224	17	5.0	17	77	5	84	51	1	2	45	1.21
45706137--45706224	34	2.6	34	76	7	97	50	1	2	46	1.21
45706557--45707061	206	2.5	199	83	5	645	21	22	20	35	1.96
45707444--45707548	49	2.1	49	87	0	156	12	28	21	37	1.90
45707513--45707852	100	3.4	100	80	2	290	13	25	22	39	1.90
45708848--45708913	6	11.5	6	85	6	66	0	12	4	83	0.79
45714526--45714736	30	7.1	30	76	10	141	36	2	25	35	1.71
45714526--45714669	58	2.5	58	83	3	173	34	2	27	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45715638--45715666	14	2.1	14	100	0	58	27	31	0	41	1.56
45715848--45715883	9	4.0	9	85	0	54	47	2	0	50	1.15
45716536--45716621	6	15.0	6	68	13	56	50	1	1	47	1.16
45716546--45716621	17	4.5	17	76	5	82	51	1	1	46	1.17
45718054--45718381	29	11.2	29	70	24	181	35	2	28	33	1.72
45718010--45718395	29	13.1	28	64	24	122	34	2	30	32	1.72
45718008--45718443	59	7.4	59	86	2	545	34	3	29	32	1.74
45718584--45719092	161	3.2	161	94	0	869	51	12	14	21	1.75
45720613--45720666	17	3.1	17	86	2	72	53	1	3	40	1.29
45721676--45721702	2	13.5	2	100	0	54	48	0	51	0	1.00
45727052--45727097	20	2.3	20	82	14	60	54	0	21	23	1.45
45734894--45734964	26	2.8	25	81	8	90	40	9	16	32	1.82
45736733--45736823	46	2.0	46	91	0	146	41	7	1	49	1.38
45740449--45740492	18	2.3	19	80	11	54	31	0	2	65	1.05
45741084--45741125	21	2.0	21	95	0	75	42	26	9	21	1.83
45745719--45746033	159	2.0	159	95	0	567	31	7	22	39	1.81
45746553--45746625	24	3.1	23	79	13	94	60	2	4	32	1.30
45747525--45747563	20	1.9	21	89	5	62	48	0	25	25	1.51
45751911--45752136	43	5.3	43	82	4	231	30	29	15	23	1.96
45751923--45752136	86	2.5	86	86	1	277	30	28	16	24	1.96
45759795--45759891	24	4.1	24	73	5	72	21	10	18	49	1.77
45760821--45760877	17	3.4	17	75	18	55	40	1	7	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45762483--45762812	162	2.0	162	97	0	624	25	16	13	44	1.84
45762891--45763306	59	7.1	59	86	5	556	32	30	3	32	1.76
45762891--45763289	117	3.4	118	89	2	572	33	30	3	33	1.73
45762891--45763294	176	2.3	176	90	3	618	33	30	3	32	1.74
45763270--45763344	38	2.0	38	84	5	98	29	26	9	34	1.88
45763343--45763402	28	2.1	28	90	0	93	30	31	11	26	1.92
45774414--45775867	76	19.0	76	96	0	2586	34	15	17	32	1.91
45774414--45775870	534	2.7	534	96	0	2688	34	15	17	32	1.91
45776149--45776205	17	3.4	17	75	18	55	40	1	7	50	1.40
45777821--45778158	162	2.1	162	94	0	595	26	16	12	44	1.83
45778229--45778600	59	6.3	59	87	1	512	33	29	2	34	1.73
45778261--45778363	31	3.4	30	71	18	88	34	27	2	34	1.72
45778587--45778645	28	2.1	28	87	0	82	27	30	13	28	1.94
45780780--45780848	34	2.0	34	97	0	129	36	8	13	42	1.75
45783650--45783859	115	1.8	115	85	2	296	22	27	17	32	1.96
45783742--45784152	203	2.0	204	87	0	599	25	25	16	33	1.96
45784613--45784787	49	3.6	49	66	9	113	19	25	16	39	1.91
45784373--45785154	98	7.9	98	76	4	662	19	27	15	37	1.92
45784410--45785154	197	3.8	195	76	8	551	19	27	15	37	1.92
45784929--45785147	49	4.5	48	72	8	174	17	29	15	36	1.91
45786090--45786130	10	3.8	11	78	15	50	0	9	7	82	0.83
45786088--45786125	20	1.9	20	94	0	67	0	7	7	84	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45793225--45793637	203	2.0	204	86	1	578	23	25	16	34	1.96
45793875--45794636	98	7.8	97	80	4	699	19	27	15	37	1.92
45793925--45794247	49	6.6	48	68	7	155	19	26	15	38	1.91
45793856--45794625	295	2.6	292	80	6	822	19	27	15	37	1.92
45794067--45794622	49	11.3	49	67	11	196	19	28	15	36	1.92
45795575--45795623	12	3.6	14	75	20	50	0	10	8	81	0.87
45801372--45801406	16	2.1	16	89	10	52	14	8	0	77	0.99
45801974--45802018	20	2.2	21	84	11	58	53	13	2	31	1.52
45812141--45812188	23	2.1	23	92	0	78	45	8	12	33	1.72
45814049--45814106	20	2.9	20	92	0	98	34	32	20	12	1.90
45814232--45814277	25	2.0	24	84	16	62	54	8	4	32	1.51
45814487--45814527	2	21.5	2	90	9	68	51	0	0	48	1.00
45814487--45814527	19	2.2	19	100	0	82	51	0	0	48	1.00
45814488--45814521	17	2.0	17	100	0	68	52	0	0	47	1.00
45821635--45821693	26	2.3	27	82	11	79	35	27	16	20	1.94
45821645--45821704	26	2.3	26	82	5	68	33	26	16	23	1.96
45831305--45831355	15	3.2	15	81	16	50	5	21	0	72	1.05
45831317--45831355	15	2.6	15	84	12	53	5	20	0	74	1.01
45841037--45841074	19	2.0	20	89	5	60	21	2	0	76	0.91
45841114--45841153	11	3.6	11	82	0	53	75	2	5	17	1.10
45841750--45841828	26	3.2	26	66	20	78	21	3	30	44	1.70
45841750--45841850	48	2.1	48	98	0	193	20	4	31	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45845804--45845833	8	3.6	8	95	4	51	83	0	0	16	0.65
45846952--45847031	31	2.4	34	78	19	87	62	10	10	17	1.53
45847818--45848015	95	2.1	95	77	3	202	34	11	18	35	1.87
45849120--45849182	31	2.0	32	90	3	101	42	17	6	33	1.74
45854021--45854168	60	2.4	61	82	5	167	33	21	13	31	1.92
45859251--45859275	12	2.1	12	100	0	50	60	0	40	0	0.97
45867296--45867334	19	2.0	20	85	5	53	66	0	17	15	1.25
45871446--45871515	12	6.0	12	85	8	74	22	17	17	42	1.88
45871485--45871515	11	2.8	11	100	0	62	9	19	22	48	1.78
45871629--45871716	12	7.6	12	69	16	60	26	12	20	40	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171