genome.fa.s3.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  48  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20211973--20212054	17	4.8	17	77	8	78	37	2	6	53	1.39
20211986--20212054	34	2.0	34	85	0	93	39	1	5	53	1.34
20213506--20213534	5	6.0	5	92	8	51	82	0	0	17	0.66
20213633--20213701	32	2.1	33	86	2	95	18	14	8	57	1.62
20213729--20214065	161	2.1	162	94	0	595	25	17	12	45	1.83
20214135--20214411	57	4.8	57	83	4	349	34	28	2	34	1.71
20214167--20214384	29	7.5	28	68	13	120	35	27	2	34	1.71
20214135--20214410	116	2.4	114	87	4	394	34	28	2	34	1.71
20214198--20214411	28	7.5	27	71	14	144	33	29	2	34	1.70
20214135--20214430	59	5.1	58	84	2	353	33	29	3	33	1.74
20214339--20214430	29	3.1	28	73	17	80	31	31	4	32	1.77
20219899--20219950	26	2.0	27	81	11	63	34	0	0	65	0.93
20223760--20223796	16	2.3	17	81	13	51	13	16	0	70	1.17
20224701--20224739	15	2.5	15	87	8	51	69	0	0	30	0.89
20224701--20224738	17	2.4	17	86	8	53	71	0	0	28	0.87
20225629--20225669	17	2.4	17	100	0	82	36	4	12	46	1.63
20232960--20233016	30	1.9	30	82	13	73	36	0	1	61	1.07
20236067--20236105	3	12.7	3	89	5	60	2	30	0	66	1.05
20236068--20236112	22	2.0	22	87	8	65	4	28	2	64	1.25
20245266--20245308	15	2.8	16	83	13	54	60	4	0	34	1.17
20253944--20253982	17	2.3	17	83	12	53	56	15	2	25	1.52
20275346--20275396	17	2.9	17	77	5	57	58	0	1	39	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20280773--20280917	72	2.0	70	80	9	159	42	2	6	47	1.44
20287730--20287790	24	2.6	23	89	2	86	31	13	13	42	1.82
20287729--20287810	23	3.5	23	80	5	76	34	10	14	40	1.81
20305947--20305989	21	2.0	21	86	0	59	48	20	18	11	1.79
20306802--20306861	27	2.3	27	85	8	79	41	3	20	35	1.68
20307718--20307760	9	4.4	9	83	13	50	37	0	2	60	1.10
20307721--20307761	20	2.0	21	90	4	66	36	0	2	60	1.10
20321134--20321260	8	15.5	8	70	23	61	62	0	3	33	1.17
20321220--20321286	25	2.7	24	80	11	64	58	0	0	41	0.98
20321306--20321386	10	8.3	10	73	10	51	65	1	2	30	1.13
20321315--20321386	19	3.7	20	69	12	60	62	1	2	33	1.18
20328016--20328049	16	2.1	16	88	0	50	70	2	20	5	1.21
20329297--20329411	60	1.9	60	83	3	151	44	17	8	29	1.79
20332654--20332686	11	3.1	11	82	8	50	48	0	0	51	1.00
20332674--20332717	15	3.2	15	87	12	60	36	0	0	63	0.95
20338005--20338069	32	2.0	32	100	0	130	30	6	15	47	1.70
20354616--20354798	90	2.0	90	85	2	242	34	16	14	33	1.90
20360610--20360654	22	2.1	22	84	12	58	31	2	0	66	1.04
20364143--20364209	31	2.2	30	83	2	80	38	2	13	44	1.59
20369783--20369807	2	12.5	2	100	0	50	48	0	0	52	1.00
20374434--20374505	17	4.2	17	87	7	101	45	0	1	52	1.09
20374448--20374505	6	10.0	6	75	14	59	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20374434--20374505	35	2.1	34	87	7	101	45	0	1	52	1.09
20375883--20375915	12	2.8	12	100	0	66	30	45	18	6	1.73
20376334--20376581	29	8.5	30	75	10	158	36	25	3	35	1.73
20376315--20376571	59	4.4	60	78	7	219	36	26	3	33	1.73
20376325--20376558	88	2.7	85	81	8	263	36	25	3	34	1.73
20376680--20376742	28	2.2	28	80	5	74	38	25	6	30	1.81
20377779--20377819	13	3.2	13	85	0	55	63	2	0	34	1.08
20381696--20381762	30	2.2	30	79	10	75	65	2	1	29	1.16
20399521--20399565	18	2.3	20	81	11	58	62	2	0	35	1.08
20399521--20399588	21	3.5	19	80	15	68	58	2	0	38	1.13
20399721--20399764	20	2.2	20	87	0	61	72	0	4	22	1.02
20401798--20401836	18	2.1	19	90	4	62	51	0	0	48	1.00
20411550--20411592	6	7.2	6	100	0	86	34	0	16	48	1.46
20418022--20418054	16	2.0	17	88	5	50	30	0	0	69	0.88
20420997--20421045	26	1.9	26	91	4	82	46	0	2	51	1.12
20423281--20423491	79	2.7	78	86	3	275	32	25	10	30	1.90
20429817--20429912	35	2.7	35	87	6	124	39	1	4	55	1.26
20429845--20429912	6	11.5	6	72	19	54	42	1	1	54	1.18
20429817--20429912	17	5.5	17	82	8	122	39	1	4	55	1.26
20433906--20433950	23	2.0	23	81	0	54	64	6	17	11	1.46
20434660--20434823	28	5.6	28	71	16	118	34	27	3	34	1.75
20434630--20434823	59	3.3	58	83	4	237	35	27	3	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20436606--20436663	30	1.9	31	89	3	91	50	6	3	39	1.46
20438741--20438775	17	2.1	17	88	0	52	22	8	8	60	1.54
20438986--20439028	23	2.0	21	82	13	52	13	9	2	74	1.16
20444565--20444603	20	2.0	20	85	5	53	46	0	0	53	1.00
20449364--20449397	4	8.5	4	93	0	59	50	26	0	23	1.50
20453451--20453492	22	2.0	22	85	4	59	23	2	0	73	0.94
20461517--20461565	16	3.0	17	76	5	57	34	6	0	59	1.22
20467380--20467420	16	2.5	16	92	4	64	65	4	0	29	1.13
20467380--20467427	17	2.8	17	81	6	53	66	4	0	29	1.10
20480419--20480445	6	4.5	6	100	0	54	33	18	48	0	1.49
20488710--20488756	8	6.0	8	80	2	51	61	0	0	38	0.96
20488714--20488762	16	3.0	16	75	3	53	65	0	0	34	0.93
20488679--20488762	33	2.5	34	77	12	95	65	0	1	33	1.00
20494095--20494161	32	2.1	32	86	2	91	34	0	2	62	1.10
20496489--20496545	29	2.0	29	85	0	78	52	7	5	35	1.51
20499374--20499414	2	21.5	2	85	9	59	48	0	2	48	1.14
20505469--20505528	23	2.7	21	73	14	57	61	1	1	35	1.16
20510026--20510070	18	2.4	18	85	10	56	73	6	2	17	1.15
20510520--20510552	17	1.9	17	93	0	57	33	6	12	48	1.65
20512783--20513075	77	3.8	75	75	11	218	44	16	12	26	1.84
20518072--20518133	32	1.9	32	83	6	81	43	4	6	45	1.51
20520227--20520269	18	2.4	18	88	11	63	72	6	2	18	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20520227--20520271	17	2.6	16	86	13	63	68	6	2	22	1.24
20524542--20524985	59	7.6	57	81	5	410	34	2	29	34	1.69
20524655--20524861	29	7.0	29	64	22	83	31	1	31	34	1.67
20524587--20524972	177	2.2	176	86	2	515	34	1	29	34	1.66
20524542--20525007	118	4.0	117	82	3	505	34	1	29	34	1.69
20527216--20527609	200	2.0	200	89	2	612	19	23	20	36	1.95
20528370--20528415	20	2.3	20	100	0	92	4	26	36	32	1.76
20539801--20540167	58	6.2	58	71	13	241	34	2	28	33	1.71
20539952--20540040	31	3.0	28	71	19	74	37	0	29	33	1.58
20539954--20540045	29	3.1	28	72	20	80	33	0	28	38	1.57
20542096--20542158	16	3.8	17	75	6	67	55	4	0	39	1.21
20542088--20542157	33	2.2	32	84	2	86	54	4	0	41	1.20
20542088--20542140	16	3.2	16	84	5	70	56	1	0	41	1.10
20542099--20542151	27	2.0	27	84	0	70	56	5	0	37	1.23
20545440--20545731	76	3.8	75	76	8	225	42	16	11	28	1.84
20553195--20553240	15	2.9	16	83	9	58	36	0	8	54	1.32
20553895--20553933	4	10.0	4	94	5	71	0	25	0	74	0.82
20555094--20555174	31	2.6	32	80	9	103	29	14	9	45	1.77
20555406--20555567	60	2.7	58	85	4	225	48	12	12	25	1.77
20560921--20560947	3	9.0	3	100	0	54	33	0	33	33	1.58
20562000--20562099	40	2.5	40	95	3	175	31	26	23	20	1.98
20562278--20562326	6	8.5	6	82	8	57	20	30	0	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20562281--20562325	22	2.0	22	86	0	63	17	31	0	51	1.46
20563705--20563847	57	2.5	58	87	4	218	34	1	29	34	1.66
20563710--20563940	30	7.8	28	70	23	97	35	2	29	33	1.70
20563761--20563939	93	1.9	92	84	7	238	34	2	30	32	1.72
20565890--20565930	16	2.6	16	88	0	55	41	0	2	56	1.13
20566287--20567390	200	5.5	200	93	1	1713	19	23	21	36	1.95
20566287--20567388	398	2.8	398	91	1	1712	19	22	21	36	1.95
20579507--20579606	29	3.5	29	67	23	77	38	1	28	33	1.64
20579535--20579695	29	5.5	28	70	21	116	34	3	29	32	1.73
20579500--20579767	59	4.6	58	83	7	314	34	3	30	31	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171