genome.fa.s3.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  129  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40599630--40600366	366	2.0	366	99	0	1456	36	9	8	45	1.67
40600814--40600872	29	2.0	30	90	3	93	30	5	13	50	1.63
40600974--40601053	17	5.0	16	85	11	110	41	2	1	55	1.21
40600950--40601053	6	18.0	6	72	18	69	40	1	1	55	1.22
40600974--40601053	31	2.5	32	86	12	110	41	2	1	55	1.21
40600950--40601053	11	9.5	11	70	19	67	40	1	1	55	1.22
40601841--40601891	21	2.4	22	83	3	59	80	1	13	3	0.94
40601841--40601891	11	4.7	11	80	11	52	80	1	13	3	0.94
40602577--40602871	30	9.9	30	82	7	291	37	22	3	35	1.71
40602578--40602871	60	4.9	60	85	5	357	37	22	3	36	1.71
40602576--40602871	90	3.3	90	84	7	347	37	22	3	35	1.71
40602827--40602945	29	4.1	28	72	15	82	32	32	0	33	1.64
40602846--40602982	58	2.3	59	90	3	206	32	34	0	32	1.64
40605009--40605059	15	3.5	15	81	5	68	54	5	0	39	1.24
40605975--40606000	3	8.7	3	100	0	52	34	30	0	34	1.58
40605999--40606045	3	15.7	3	100	0	94	34	0	0	65	0.93
40606442--40606685	136	1.8	136	88	6	379	41	4	11	42	1.60
40612660--40612705	25	2.0	23	83	12	58	21	2	4	71	1.14
40612936--40613008	3	25.0	3	83	5	87	28	1	4	65	1.19
40612999--40613033	18	1.9	18	94	0	61	8	2	25	62	1.38
40620656--40620828	94	1.8	94	81	7	217	35	19	16	27	1.94
40620642--40620849	94	2.2	94	77	11	212	36	18	20	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40622531--40622605	29	2.4	31	79	16	84	20	9	2	68	1.30
40622774--40622819	20	2.3	21	82	14	53	30	2	4	63	1.26
40622792--40622830	20	2.0	20	85	10	53	30	2	5	61	1.31
40623269--40623310	22	2.0	22	86	13	61	47	9	7	35	1.64
40636076--40636137	6	10.0	6	74	6	52	25	3	0	70	1.02
40637741--40637790	23	2.2	23	92	0	82	28	26	22	24	1.99
40637751--40637797	23	2.0	23	95	0	85	29	25	23	21	1.99
40638968--40639010	20	2.2	20	91	4	70	62	6	0	30	1.21
40639001--40639041	20	2.2	18	86	8	55	58	0	2	39	1.11
40642920--40642946	5	5.4	5	100	0	54	81	0	0	18	0.69
40644359--40644508	37	4.1	36	75	12	128	41	15	20	23	1.90
40644381--40644483	35	2.8	38	78	12	124	40	14	21	23	1.90
40644396--40644559	36	4.5	37	75	8	133	43	14	17	24	1.87
40644381--40644558	73	2.5	73	83	1	198	43	15	17	24	1.87
40646572--40646605	2	17.0	2	100	0	68	50	0	0	50	1.00
40647444--40647542	30	3.3	29	70	18	78	26	14	14	45	1.82
40650363--40650398	17	2.1	17	94	0	63	41	0	8	50	1.33
40652591--40652694	29	3.6	31	79	13	82	33	5	25	34	1.80
40654620--40654696	6	12.8	6	71	14	52	55	3	1	38	1.26
40654621--40654683	17	3.9	16	78	16	67	58	3	1	36	1.23
40654627--40654689	11	5.9	11	71	14	51	58	3	1	36	1.23
40655104--40655142	20	2.0	20	85	10	53	46	0	2	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40660098--40660151	20	2.8	18	72	20	54	12	64	1	20	1.36
40660098--40660174	40	1.9	40	91	0	127	11	63	2	22	1.39
40664387--40664420	17	2.0	17	88	0	50	58	5	0	35	1.22
40665019--40665066	10	4.8	10	80	10	62	43	0	0	56	0.99
40665018--40665066	19	2.5	20	83	6	64	42	0	0	57	0.99
40665018--40665088	30	2.3	30	83	11	81	36	2	1	59	1.21
40666265--40666600	29	11.6	27	73	16	171	39	25	2	32	1.71
40666258--40666545	58	4.9	59	78	12	224	38	25	3	32	1.73
40666255--40666542	87	3.3	84	80	10	278	38	25	3	32	1.73
40666383--40666573	87	2.2	86	81	8	208	40	25	3	30	1.71
40666383--40666602	58	3.8	59	76	13	190	40	25	2	31	1.70
40671414--40671443	15	1.9	16	93	6	53	86	0	13	0	0.57
40672388--40672444	19	2.9	19	82	12	62	80	0	17	1	0.79
40672415--40672469	13	4.1	13	72	9	56	72	1	23	1	1.04
40672381--40672466	6	13.7	6	72	24	54	77	1	17	3	0.96
40676117--40676211	41	2.3	41	87	0	127	34	21	12	31	1.91
40676201--40676520	78	4.1	77	73	6	234	22	28	22	26	1.99
40676284--40676378	39	2.4	39	98	0	181	16	23	29	30	1.96
40676245--40676456	117	1.8	117	79	4	248	20	26	25	26	1.99
40676199--40676500	39	7.8	38	74	8	128	22	28	23	25	2.00
40677846--40677896	23	2.5	20	81	12	59	41	1	0	56	1.10
40679107--40679259	29	5.3	29	72	10	107	33	25	4	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40679127--40679458	29	11.4	29	70	14	150	37	25	3	33	1.73
40679237--40679293	30	1.9	30	85	7	80	40	17	0	42	1.49
40679119--40679400	58	4.9	58	76	8	173	37	26	2	33	1.71
40679109--40679332	115	1.9	117	81	7	269	36	25	3	35	1.72
40679271--40679392	30	4.1	29	73	18	92	40	27	2	29	1.69
40685284--40685553	132	2.0	132	99	0	531	32	17	19	30	1.95
40694577--40694610	17	2.0	17	88	0	50	50	2	14	32	1.58
40702944--40703002	22	2.7	22	73	2	57	40	22	18	18	1.91
40702946--40703022	21	3.6	21	75	3	73	38	22	18	20	1.93
40709079--40709117	19	2.0	19	85	5	51	35	2	0	61	1.10
40709196--40709231	18	1.9	19	88	5	56	38	0	0	61	0.96
40713181--40713206	13	2.0	13	100	0	52	30	15	7	46	1.74
40713322--40713389	25	2.7	27	71	24	69	36	0	7	55	1.28
40715700--40715802	17	6.0	16	75	15	82	44	0	3	50	1.26
40715725--40715783	6	10.3	6	80	10	70	47	0	1	50	1.11
40715725--40715779	23	2.5	22	87	3	74	45	0	1	52	1.11
40717114--40717158	10	4.5	10	97	0	81	42	0	8	48	1.34
40720457--40720509	13	4.1	14	76	16	60	67	0	3	28	1.07
40720457--40720509	26	2.0	26	100	0	106	67	0	3	28	1.07
40721291--40721352	10	6.3	10	79	1	72	58	0	4	37	1.20
40721284--40721346	30	2.1	29	91	2	99	52	0	4	42	1.22
40721300--40721363	30	2.1	30	82	5	76	57	1	7	32	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40729785--40729860	29	2.6	29	85	8	93	34	1	23	40	1.63
40731823--40731884	17	3.6	17	82	10	81	56	4	0	38	1.21
40731805--40731849	23	2.0	23	95	0	81	55	2	2	40	1.24
40731788--40731873	41	2.1	41	84	2	111	52	4	1	41	1.30
40731804--40731852	6	8.5	6	74	17	50	51	2	2	44	1.24
40731806--40731849	11	3.9	11	85	5	61	56	2	2	38	1.24
40732290--40733318	201	5.1	201	88	0	1497	23	23	19	34	1.97
40733246--40733366	48	2.5	48	97	0	224	24	27	14	33	1.95
40733046--40733612	248	2.3	248	87	1	814	23	23	17	34	1.96
40733494--40733612	48	2.5	48	91	0	202	24	26	14	35	1.93
40733680--40733805	39	3.2	38	69	16	114	25	23	26	24	2.00
40733664--40733820	78	2.0	78	88	2	235	25	19	28	26	1.99
40734083--40734392	101	3.1	100	82	5	279	13	24	20	41	1.88
40734084--40734340	51	5.1	51	73	9	163	14	25	19	40	1.90
40734232--40734390	50	3.2	50	71	12	153	13	23	22	40	1.89
40735594--40735658	20	3.2	20	77	20	71	1	21	1	75	0.97
40735610--40735666	19	3.1	17	76	18	51	1	15	1	80	0.87
40735593--40735658	22	3.1	22	78	14	75	1	22	1	74	0.99
40735599--40735666	14	5.2	12	79	11	64	1	17	1	79	0.88
40741057--40741133	29	2.7	29	82	7	79	35	3	27	33	1.75
40741081--40741375	29	10.1	29	76	11	200	36	3	25	35	1.73
40741081--40741372	59	5.0	59	73	11	167	36	3	24	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40741052--40741372	88	3.6	88	81	6	323	36	4	24	34	1.75
40743291--40743430	17	8.4	16	78	11	95	54	4	0	40	1.25
40743308--40743398	6	15.5	6	74	17	75	53	3	1	41	1.24
40743339--40743368	14	2.1	14	100	0	60	60	0	0	40	0.97
40743321--40743430	35	3.1	34	83	10	116	56	4	0	39	1.20
40743291--40743432	65	2.2	65	81	7	157	54	4	0	40	1.25
40743310--40743378	11	5.9	11	73	18	50	56	4	1	37	1.28
40759601--40759842	59	4.0	59	72	13	199	50	9	15	24	1.72
40759590--40759850	124	2.1	123	85	3	337	50	8	16	23	1.73
40759761--40759836	29	2.6	28	72	4	71	51	7	14	26	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171