genome.fa.s3.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  111  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35591530--35591573	3	14.7	3	100	0	88	34	0	0	65	0.93
35592346--35592389	20	2.1	21	84	12	56	75	11	0	13	1.06
35592659--35592709	21	2.5	20	78	9	57	39	1	1	56	1.22
35592619--35592707	40	2.3	37	81	9	108	37	2	2	58	1.23
35593677--35593711	10	3.5	10	88	0	52	34	0	0	65	0.93
35594358--35594401	12	3.7	12	87	9	63	75	0	0	25	0.81
35594358--35594402	23	1.9	24	90	4	74	73	0	0	26	0.84
35599375--35599406	14	2.3	14	94	0	55	28	25	9	37	1.87
35601132--35601178	22	2.2	21	85	11	60	42	4	0	53	1.20
35607295--35607352	29	2.1	26	87	9	80	53	24	0	22	1.46
35607338--35607382	20	2.1	22	88	8	67	62	6	0	31	1.21
35607338--35607389	26	2.0	26	96	0	95	61	5	0	32	1.20
35608445--35608478	18	1.9	18	88	5	52	50	2	0	47	1.16
35609135--35609190	30	1.9	28	86	13	78	25	17	10	46	1.80
35615377--35615444	17	3.8	17	68	24	50	45	20	4	29	1.70
35619125--35619365	38	6.3	38	83	3	243	30	17	18	33	1.94
35624759--35624800	20	2.0	22	90	9	70	38	0	14	47	1.44
35627417--35627456	20	2.0	21	85	5	55	47	15	15	22	1.82
35628015--35628119	50	2.1	51	83	5	133	36	0	4	58	1.26
35628070--35628126	29	2.0	29	86	6	80	43	1	1	52	1.21
35628021--35628128	17	6.4	17	76	4	101	40	0	4	53	1.28
35628831--35628896	33	2.1	30	88	8	96	48	6	3	42	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35630030--35630106	30	2.6	31	81	8	97	36	27	2	33	1.71
35630073--35630254	59	3.1	56	77	10	141	37	19	4	37	1.74
35630201--35630281	29	2.8	29	83	9	85	34	19	6	39	1.77
35630217--35630294	28	2.7	29	83	11	90	34	23	6	35	1.80
35630217--35630296	29	2.8	29	85	9	94	33	23	6	36	1.80
35631871--35631912	17	2.4	18	80	11	52	57	11	14	16	1.66
35632293--35632335	3	14.3	3	81	18	54	0	34	2	62	1.08
35632294--35632335	15	3.1	14	83	16	61	0	35	2	61	1.09
35633529--35633625	29	3.4	26	76	12	86	36	5	26	31	1.79
35633554--35633881	30	11.1	29	79	5	273	35	3	25	35	1.73
35633561--35633824	59	4.5	59	80	4	266	35	3	25	35	1.72
35634633--35634667	6	5.8	6	100	0	70	34	0	17	48	1.47
35643233--35643775	271	2.0	271	96	0	996	25	20	14	39	1.91
35647012--35647064	21	2.5	21	87	3	70	50	0	1	47	1.12
35652548--35652623	29	2.6	29	100	0	152	23	18	17	40	1.91
35652568--35652620	17	3.4	17	70	24	62	24	16	16	41	1.89
35652548--35652668	58	2.1	56	80	3	125	25	14	15	43	1.85
35653366--35653400	18	1.9	18	94	0	61	25	0	5	68	1.11
35662885--35663105	118	1.9	118	88	0	334	33	20	15	30	1.94
35667976--35668052	34	2.3	32	82	8	84	49	1	1	48	1.17
35668004--35668058	18	3.3	18	65	29	50	54	0	0	45	0.99
35668004--35668058	17	3.3	18	69	21	57	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35668752--35668810	29	2.0	29	83	6	75	45	1	0	52	1.10
35668764--35668807	23	2.0	22	86	13	63	40	0	0	59	0.98
35668768--35668813	23	2.0	23	83	8	58	45	0	0	54	0.99
35672905--35672963	14	4.6	14	74	20	58	57	5	0	37	1.21
35677398--35677436	17	2.4	17	87	8	55	53	0	2	43	1.14
35683315--35683348	16	2.1	16	88	5	50	26	2	5	64	1.30
35688634--35688671	18	2.1	19	90	5	60	31	2	0	65	1.06
35689036--35689094	24	2.5	24	88	0	91	49	11	13	25	1.76
35689859--35689927	19	3.7	18	71	9	57	44	18	8	27	1.79
35691511--35691552	21	2.0	21	86	9	59	40	16	4	38	1.70
35694384--35694450	33	2.0	33	83	11	84	35	7	22	34	1.82
35694624--35694665	21	2.0	21	86	9	59	40	16	4	38	1.70
35698514--35698625	43	2.6	43	87	2	154	32	9	20	37	1.85
35698825--35698880	28	2.0	29	85	3	78	25	19	8	46	1.79
35700061--35700102	14	2.9	14	86	10	57	45	42	4	7	1.52
35701375--35701518	4	36.0	4	64	16	50	24	2	4	68	1.20
35701376--35701412	16	2.2	17	95	4	67	21	0	2	75	0.92
35701371--35701518	32	4.9	29	67	21	81	24	2	4	68	1.19
35705169--35705208	20	2.0	20	100	0	80	30	40	5	25	1.77
35705415--35705472	20	2.9	20	82	5	73	32	22	12	32	1.91
35714514--35714566	21	2.8	18	76	15	52	47	3	5	43	1.45
35714898--35714954	20	2.9	19	75	17	62	66	0	1	31	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35715636--35715665	15	1.9	16	93	6	53	33	3	10	53	1.51
35715632--35715672	16	2.6	16	84	7	57	39	2	9	48	1.49
35719918--35720080	87	1.9	86	88	1	245	36	21	15	26	1.94
35726717--35726768	17	3.1	17	81	10	63	44	0	0	55	0.99
35727124--35727197	37	2.0	38	84	7	98	52	0	8	39	1.31
35748889--35748986	51	1.9	49	86	13	137	54	13	7	25	1.64
35749149--35749247	51	2.0	49	84	7	128	40	13	13	33	1.83
35750744--35750804	21	2.9	21	73	9	61	9	16	0	73	1.08
35753051--35753088	19	2.0	19	100	0	76	42	15	5	36	1.70
35753131--35753190	31	1.9	32	86	10	88	48	16	10	25	1.77
35753191--35753223	17	1.9	17	88	11	50	66	6	0	27	1.15
35756353--35756425	36	2.0	36	89	5	112	24	13	23	38	1.91
35757138--35757258	52	2.4	52	82	9	142	39	14	14	30	1.87
35757138--35757309	51	3.4	50	81	6	175	37	14	15	33	1.88
35762280--35762344	14	4.4	14	72	14	51	56	1	12	29	1.45
35771131--35771310	40	4.5	40	82	1	209	40	20	13	26	1.89
35771130--35771310	79	2.3	79	85	0	236	39	20	13	25	1.90
35771131--35771389	80	3.3	79	81	1	223	39	21	13	25	1.90
35772575--35773198	310	2.0	310	95	1	1126	37	9	10	42	1.72
35774286--35774348	31	2.0	31	96	0	117	28	19	12	39	1.88
35778527--35778631	45	2.3	46	91	3	176	16	31	4	47	1.67
35779782--35779808	3	9.0	3	100	0	54	33	0	33	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35784907--35785004	28	3.6	27	79	15	96	38	19	22	19	1.93
35785089--35785223	29	4.7	29	81	9	143	41	24	13	20	1.88
35785072--35785223	57	2.6	58	77	13	163	40	25	13	20	1.89
35785314--35785425	55	2.0	55	81	6	129	25	21	13	39	1.90
35787857--35787894	18	2.2	18	85	4	51	57	0	0	42	0.98
35787948--35787982	17	2.1	17	100	0	70	45	0	0	54	0.99
35788505--35788652	59	2.5	57	77	6	145	22	14	9	52	1.71
35788508--35788652	57	2.5	56	78	8	148	22	14	9	53	1.70
35790095--35790135	21	2.0	21	85	0	55	82	0	17	0	0.66
35790313--35790378	30	2.2	30	88	0	96	46	4	0	48	1.22
35790368--35790400	15	2.2	15	89	10	50	66	0	0	33	0.92
35793943--35793985	18	2.4	18	88	7	61	53	0	0	46	1.00
35796222--35796371	23	6.4	23	78	11	96	12	24	23	40	1.88
35796263--35796343	23	3.6	22	85	5	108	13	22	27	37	1.91
35797678--35797732	22	2.5	22	79	2	58	21	34	20	23	1.97
35800649--35800711	23	2.7	23	82	4	83	14	19	22	44	1.86
35801880--35801987	23	4.7	23	83	0	135	15	20	23	40	1.90
35801880--35801994	46	2.5	46	85	0	158	14	20	22	42	1.88
35809071--35809192	23	5.4	21	73	14	57	15	18	21	45	1.86
35809088--35809186	23	4.3	23	82	6	112	16	19	22	42	1.89
35809771--35809952	82	2.2	82	88	0	258	32	23	18	24	1.97
35810442--35810479	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35818138--35818181	23	1.9	23	90	0	70	20	11	18	50	1.77
35819155--35819186	14	2.3	14	94	0	55	15	0	3	81	0.82
35819372--35819430	24	2.7	23	80	19	72	22	5	0	72	1.03
35820686--35820822	28	4.9	28	77	7	107	20	18	24	36	1.95
35820683--35820820	56	2.5	56	72	9	127	20	18	24	36	1.94
35823740--35823792	15	3.5	15	75	10	63	41	16	26	15	1.88
35823747--35823806	30	2.0	30	96	0	111	40	15	30	15	1.87
35823810--35823885	30	2.5	30	84	0	89	31	26	17	25	1.97
35826695--35826797	46	2.2	48	87	5	149	50	15	19	14	1.78
35827198--35827259	20	3.1	19	81	11	70	24	16	8	51	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171