genome.fa.s12.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  101  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30905263--30905306	17	2.6	17	79	20	56	54	2	0	43	1.12
30906530--30906633	48	2.2	48	91	0	163	31	39	17	11	1.85
30909823--30909937	48	2.4	48	86	0	167	33	34	19	13	1.90
30910517--30910651	42	3.2	42	86	1	162	21	28	17	31	1.96
30910715--30910747	15	2.2	15	94	0	57	51	27	0	21	1.48
30910917--30910959	21	2.0	21	95	0	77	2	48	20	27	1.62
30910955--30911102	66	2.2	66	96	0	269	14	24	18	42	1.88
30911876--30911914	15	2.6	14	81	14	51	64	0	2	33	1.08
30912871--30912913	7	5.9	7	84	10	59	39	4	0	55	1.20
30915046--30915323	69	4.0	69	79	2	299	37	11	34	16	1.84
30918186--30918250	30	2.2	30	81	10	71	63	7	3	26	1.36
30918682--30918736	22	2.5	22	81	0	74	58	16	16	9	1.62
30924503--30924536	17	1.9	18	88	5	52	47	0	2	50	1.16
30924570--30924608	20	2.0	20	94	0	69	41	30	5	23	1.76
30930322--30930509	53	3.7	51	81	8	231	31	20	19	28	1.97
30930322--30930509	100	1.8	104	86	6	276	31	20	19	28	1.97
30939569--30939648	31	2.6	30	84	5	90	31	7	13	47	1.71
30939792--30939878	31	2.9	30	83	6	104	42	6	8	42	1.61
30943142--30943216	29	2.6	29	81	10	73	25	6	30	37	1.82
30943243--30943319	28	2.6	30	85	6	104	37	3	20	37	1.71
30945397--30945932	39	13.7	39	70	5	301	25	20	30	23	1.98
30945387--30945933	78	7.0	78	84	0	644	25	20	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30955888--30955947	29	2.1	28	81	3	66	35	3	28	33	1.74
30955944--30956016	30	2.5	30	80	8	78	39	1	19	39	1.60
30957049--30957074	4	6.5	4	100	0	52	23	0	0	76	0.78
30979281--30979326	21	2.1	23	84	8	60	43	4	8	43	1.55
30979983--30980015	16	2.1	17	88	11	52	39	0	6	54	1.25
30983352--30983434	27	3.0	27	77	8	78	62	2	4	30	1.28
30983328--30983433	56	1.9	55	81	9	126	62	1	7	28	1.33
30983507--30983547	9	4.6	9	80	19	50	21	0	0	78	0.76
30983663--30983798	9	14.4	9	71	13	87	36	3	0	60	1.15
30983663--30983798	19	7.2	18	72	14	78	36	3	0	60	1.15
30983709--30983774	28	2.4	28	78	19	75	40	3	0	56	1.15
30985600--30985639	18	2.4	17	87	8	55	22	17	15	45	1.85
30997229--30997279	15	3.4	15	72	20	52	31	5	29	33	1.81
31002499--31002814	29	10.9	29	77	10	222	34	26	4	33	1.77
31002488--31002844	29	12.3	29	73	8	219	35	26	4	34	1.76
31002521--31002829	57	5.3	57	78	8	268	35	26	4	33	1.77
31003518--31003823	150	2.0	151	96	0	569	30	20	14	34	1.92
31010176--31010679	50	10.2	50	77	7	472	33	19	33	13	1.91
31010176--31010676	147	3.4	146	80	4	526	33	19	32	13	1.92
31010185--31010676	99	5.0	99	80	6	521	33	19	32	14	1.91
31011093--31011124	7	4.6	7	100	0	64	43	0	0	56	0.99
31011137--31011182	17	2.7	17	89	0	74	36	2	6	54	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31011101--31011165	23	2.8	22	88	6	85	38	1	4	55	1.30
31011096--31011184	6	15.0	6	75	10	51	39	1	4	55	1.28
31011802--31011853	9	5.4	9	78	13	59	57	0	3	38	1.17
31011804--31011842	20	1.9	20	89	5	60	53	0	5	41	1.23
31011805--31011862	30	1.9	30	85	0	80	62	0	3	34	1.12
31012957--31013206	60	4.2	58	84	8	274	37	25	1	35	1.66
31012956--31013296	30	11.5	30	74	13	235	36	24	2	36	1.71
31012956--31013226	29	9.1	29	74	15	200	37	25	1	34	1.67
31014645--31014695	20	2.5	20	84	6	59	31	3	7	56	1.46
31022040--31022104	24	2.9	22	78	13	62	30	3	1	64	1.18
31022396--31022464	22	3.0	23	80	6	77	43	0	2	53	1.15
31022428--31022487	26	2.2	28	77	14	72	40	0	5	55	1.22
31022497--31022536	21	2.0	20	85	5	53	52	5	0	42	1.23
31025667--31025826	23	7.0	23	86	0	230	46	13	5	34	1.65
31027946--31027999	21	2.6	21	91	5	83	27	9	27	35	1.87
31031292--31031676	23	16.7	23	86	0	536	46	15	5	31	1.70
31035434--31035525	46	2.0	46	95	0	166	20	22	5	51	1.68
31045217--31045260	23	1.9	23	85	0	61	56	0	9	34	1.31
31046076--31046100	13	1.9	13	100	0	50	68	8	8	16	1.38
31049499--31049556	31	1.9	30	82	10	73	48	18	0	32	1.49
31050437--31050479	18	2.4	18	88	7	61	46	0	0	53	1.00
31057856--31057932	37	2.1	37	100	0	154	33	20	5	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31061112--31061179	22	3.1	23	83	8	79	16	27	16	39	1.89
31061673--31061703	15	2.1	15	100	0	62	22	19	12	45	1.84
31067874--31067973	48	2.1	48	100	0	200	25	14	15	46	1.82
31070683--31070711	15	1.9	15	100	0	58	20	13	13	51	1.75
31076406--31076431	7	3.7	7	100	0	52	30	0	53	15	1.42
31077696--31077808	25	4.5	25	87	0	145	32	26	15	24	1.96
31079170--31079230	3	20.0	3	86	3	77	34	4	0	60	1.18
31095246--31095293	17	2.9	16	82	11	53	4	31	4	60	1.35
31095251--31095293	17	2.6	17	85	10	54	2	34	4	58	1.32
31095483--31095520	19	2.0	19	94	0	67	71	0	13	15	1.16
31096628--31096705	39	2.0	40	89	2	122	42	12	19	25	1.87
31123570--31123635	19	3.4	19	81	8	71	53	6	1	39	1.35
31123553--31123640	20	4.6	19	77	12	67	54	5	1	38	1.32
31127731--31127762	14	2.3	14	94	0	55	62	9	0	28	1.26
31131037--31131120	24	3.5	24	90	1	134	29	23	22	23	1.99
31131871--31131912	3	14.0	3	100	0	84	66	0	33	0	0.92
31138524--31138590	16	4.5	15	73	21	61	43	0	4	52	1.21
31141593--31141749	30	5.4	29	76	6	138	36	24	3	36	1.72
31141593--31141728	60	2.3	59	82	3	175	36	25	2	36	1.71
31141593--31141808	29	7.4	28	73	7	137	36	24	3	36	1.72
31141698--31141844	58	2.5	58	80	4	136	33	26	4	36	1.76
31141716--31141948	59	4.0	59	81	2	220	30	22	6	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31141734--31141989	59	4.4	57	77	6	174	29	21	6	42	1.77
31141999--31142061	29	2.2	29	77	8	67	30	23	12	33	1.92
31147545--31147584	14	2.8	14	92	3	62	82	0	15	2	0.77
31147540--31147597	16	3.6	15	75	13	53	82	0	10	6	0.83
31147553--31147603	25	2.0	26	81	7	61	80	0	13	5	0.89
31149045--31149570	92	5.5	92	86	8	759	32	16	19	31	1.94
31149045--31149570	184	2.8	189	92	4	846	32	16	19	31	1.94
31149409--31149439	16	1.9	16	100	0	62	29	12	25	32	1.93
31149317--31149531	108	2.0	108	98	0	412	31	15	20	32	1.94
31149225--31149603	200	1.9	199	93	0	659	31	16	20	31	1.95
31149712--31149815	38	2.7	40	86	5	133	23	31	21	24	1.98
31150219--31150302	11	7.5	11	79	14	84	40	0	1	58	1.06
31150205--31150302	17	5.9	16	82	11	108	40	1	2	56	1.18
31150219--31150302	6	15.0	6	78	14	81	40	0	1	58	1.06
31153262--31153478	29	7.5	29	82	8	214	39	22	3	35	1.70
31153262--31153478	57	3.8	58	81	11	250	39	22	3	35	1.70
31155127--31155173	23	2.0	24	83	8	60	59	8	0	31	1.27
31163063--31163110	2	24.0	2	100	0	96	50	0	0	50	1.00
31165482--31165520	16	2.4	16	83	12	53	41	2	5	51	1.38
31189246--31189479	42	5.5	42	81	7	260	26	23	10	40	1.87
31189248--31189479	84	2.8	84	84	4	290	25	23	10	40	1.87
31190281--31190324	20	2.2	20	83	4	52	34	15	2	47	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31208357--31208521	42	3.9	42	91	1	224	26	23	9	41	1.85
31209382--31209425	20	2.2	20	83	4	52	34	15	2	47	1.58
31217297--31217378	41	2.0	41	95	0	146	25	10	15	47	1.78
31217427--31217842	208	2.0	208	98	0	796	40	12	14	32	1.83
31224533--31224570	16	2.4	16	86	8	51	60	0	21	18	1.36
31233541--31233806	117	2.3	117	90	1	417	30	23	26	19	1.98
31234059--31234101	22	2.0	22	81	9	52	34	55	0	9	1.32
31234416--31234489	3	24.7	3	79	8	62	22	1	5	70	1.16
31236978--31237067	11	7.6	11	76	16	74	80	0	13	6	0.91
31237005--31237056	18	2.7	19	88	11	79	78	0	13	7	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132