genome.fa.s12.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  60  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16774865--16774917	26	2.0	26	92	0	88	28	18	22	30	1.98
16774907--16774994	38	2.3	38	82	5	108	28	15	25	30	1.96
16776613--16776693	24	3.4	24	80	0	99	28	14	6	50	1.67
16784704--16784757	22	2.5	21	82	5	72	50	11	18	20	1.77
16793600--16793635	11	3.2	11	92	4	54	52	0	0	47	1.00
16793995--16794049	22	2.6	21	77	5	65	52	12	16	18	1.74
16797613--16797792	25	7.2	25	80	0	189	22	18	24	34	1.96
16797613--16797765	75	2.0	75	86	2	209	22	17	24	34	1.96
16801470--16801656	52	3.6	52	91	0	302	26	14	23	35	1.93
16805644--16805812	20	8.5	19	72	9	115	33	20	31	14	1.93
16805707--16805811	39	2.7	40	90	1	149	32	21	31	14	1.93
16805617--16805811	40	4.9	40	75	6	171	34	19	30	14	1.92
16823566--16823620	23	2.4	23	84	0	74	41	18	20	20	1.90
16846171--16846203	16	2.1	16	88	5	50	60	27	0	12	1.32
16846886--16846927	20	2.2	20	86	4	59	28	2	11	57	1.47
16846896--16846927	10	3.2	10	100	0	64	28	0	9	62	1.26
16847666--16847734	31	2.2	31	79	5	77	44	7	7	40	1.60
16853236--16853283	22	2.1	23	84	3	62	41	10	2	45	1.50
16856284--16856314	16	2.0	16	93	6	55	25	16	6	51	1.68
16871913--16872145	121	1.9	121	97	0	439	50	5	11	33	1.60
16873952--16873987	16	2.2	16	90	0	54	22	2	16	58	1.51
16884519--16884570	18	3.1	18	73	21	67	17	36	0	46	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16884521--16884573	17	3.2	17	75	20	67	15	33	0	50	1.44
16884658--16884855	99	2.0	99	93	0	342	22	32	9	36	1.85
16885476--16885557	11	7.9	11	73	22	63	48	1	1	48	1.17
16885445--16885557	51	2.2	50	89	4	165	49	0	0	48	1.13
16885510--16885553	21	2.0	22	87	12	65	47	0	2	50	1.13
16897339--16897381	18	2.4	18	92	0	68	23	18	27	30	1.98
16899752--16899791	18	2.3	18	86	4	55	52	10	17	20	1.72
16914481--16914538	17	3.4	17	72	13	55	53	10	20	15	1.71
16924659--16924895	51	4.6	51	90	1	350	32	15	23	27	1.95
16931947--16932175	51	4.5	51	87	1	316	32	15	22	29	1.95
16931939--16932175	102	2.3	102	89	3	352	32	15	22	29	1.95
16932875--16932921	21	2.2	21	84	0	58	25	14	23	36	1.93
16937908--16937957	3	16.7	3	95	0	91	66	32	2	0	1.03
16943803--16943926	57	2.2	57	81	10	146	32	12	17	37	1.88
16944187--16944243	26	2.1	27	80	3	62	36	3	14	45	1.61
16947918--16948116	79	2.5	79	86	2	267	29	26	21	23	1.99
16948554--16948581	2	14.0	2	100	0	56	50	0	0	50	1.00
16949010--16949058	26	1.9	25	87	4	71	8	16	2	73	1.16
16953180--16953232	5	10.2	5	76	8	52	16	5	0	77	0.96
16962250--16962373	51	2.4	51	86	5	162	26	23	16	33	1.96
16964281--16964333	21	2.5	21	78	0	52	35	22	11	30	1.89
16965031--16965267	51	4.6	51	85	5	318	28	22	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16971080--16971131	23	2.3	23	86	0	68	53	7	11	26	1.63
16971531--16971666	65	2.1	65	98	0	263	22	16	25	36	1.94
16989153--16989191	16	2.8	13	79	20	51	28	20	10	41	1.85
17000840--17000869	12	2.6	11	90	10	51	53	36	0	10	1.35
17002599--17002636	19	2.1	19	85	5	51	50	5	42	2	1.39
17005074--17005114	20	2.0	20	86	9	57	21	17	21	39	1.93
17006035--17006489	49	9.3	49	73	5	328	41	16	21	19	1.90
17006035--17006636	98	6.1	98	76	3	460	43	16	20	19	1.88
17006035--17006682	147	4.4	147	78	3	563	42	16	20	20	1.89
17006472--17006637	49	3.4	46	74	8	134	46	16	16	19	1.84
17006915--17007271	42	8.5	42	75	13	301	33	28	14	23	1.94
17006915--17007219	81	3.7	81	88	3	416	33	29	14	22	1.94
17007969--17008016	24	1.9	26	84	16	66	22	2	10	64	1.35
17008097--17008138	12	3.2	13	78	21	52	16	2	2	78	0.96
17009004--17009034	16	1.9	16	93	0	53	48	3	3	45	1.34
17010496--17010574	42	1.9	40	82	5	95	30	13	20	35	1.92
17017024--17017096	35	2.1	36	92	7	123	35	20	24	19	1.95
17017024--17017120	35	2.7	35	85	9	108	39	17	24	18	1.92
17017496--17017560	3	21.3	3	90	3	103	35	3	0	61	1.12
17017979--17018621	144	4.4	147	85	8	797	41	3	9	45	1.54
17017980--17018621	283	2.2	284	86	6	864	41	3	9	45	1.54
17019665--17020142	240	2.0	238	92	0	794	36	7	14	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17023436--17023499	4	16.0	4	86	0	65	25	26	4	43	1.74
17023704--17023729	12	2.2	12	100	0	52	42	0	34	23	1.54
17032206--17032770	42	13.5	42	87	2	785	21	18	23	36	1.95
17032744--17032798	28	2.0	28	92	0	92	21	16	12	49	1.79
17033268--17033313	3	15.3	3	90	0	74	34	4	0	60	1.16
17033840--17034075	52	4.6	51	71	14	173	41	3	9	45	1.53
17033720--17033977	138	1.9	140	86	4	371	42	3	10	43	1.57
17033840--17034183	52	6.8	50	68	15	163	43	3	8	45	1.51
17033840--17034375	152	3.6	149	88	4	756	42	3	9	43	1.55
17035398--17035867	237	2.0	238	92	2	784	36	7	14	41	1.73
17042871--17042902	7	4.6	7	92	0	55	43	40	0	15	1.47
17054547--17054653	56	1.9	57	84	5	146	26	6	8	58	1.51
17054889--17054984	27	3.4	27	74	8	84	60	7	4	28	1.42
17055350--17055429	30	2.7	29	74	12	72	51	7	2	38	1.44
17055671--17055729	29	2.0	29	90	9	93	44	5	1	49	1.34
17057207--17057342	30	4.5	30	86	5	186	30	5	25	38	1.79
17057207--17057361	30	5.2	28	83	7	132	32	5	24	36	1.79
17059144--17059278	40	3.4	38	73	12	96	30	28	20	21	1.98
17059176--17059279	37	2.7	38	76	5	93	31	26	19	22	1.97
17059382--17059426	6	7.5	6	89	0	63	22	31	0	46	1.52
17059866--17059929	29	2.2	29	97	2	121	28	15	14	42	1.86
17062234--17062321	40	2.2	40	87	0	122	28	17	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17062247--17062323	40	1.9	40	94	0	136	27	16	23	32	1.96
17075227--17075433	29	7.1	30	76	11	155	38	2	23	35	1.70
17075228--17075420	59	3.3	58	80	7	207	38	2	23	35	1.69
17084039--17084080	22	1.9	22	85	0	57	66	0	11	21	1.23
17092818--17092989	53	3.3	52	86	2	222	30	17	20	31	1.95
17093697--17093743	21	2.2	21	92	0	76	27	14	27	29	1.96
17094820--17094926	26	4.1	26	74	4	90	29	25	20	24	1.99
17101489--17101528	19	2.1	19	86	9	55	70	0	27	2	1.01
17111117--17111212	34	2.8	34	87	0	138	19	9	29	41	1.83
17112258--17112295	18	2.1	18	90	9	60	23	10	15	50	1.75
17112298--17112361	34	2.0	32	85	11	87	45	15	10	28	1.80
17114342--17114397	23	2.5	23	80	11	55	51	0	5	42	1.24
17116044--17116093	21	2.4	21	93	0	91	12	30	10	48	1.73
17119930--17119982	26	1.9	27	81	11	63	20	7	9	62	1.50
17122729--17122753	5	5.0	5	100	0	50	20	0	0	80	0.72
17125938--17125996	28	2.1	28	90	0	91	27	16	25	30	1.97
17127968--17128022	20	2.7	21	77	5	67	18	29	16	36	1.92
17127985--17128033	20	2.4	21	86	3	64	12	32	20	34	1.90
17127968--17128034	21	3.2	20	80	4	80	14	31	19	34	1.92
17129521--17129955	195	2.2	194	82	6	515	29	19	25	25	1.99
17136060--17136098	17	2.3	17	83	12	53	0	15	2	82	0.79
17146998--17147066	34	2.0	34	100	0	138	28	17	28	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17149329--17149446	62	1.9	62	91	3	193	26	25	17	30	1.97
17149329--17149447	31	3.8	31	89	0	175	26	26	17	30	1.97
17150418--17150669	10	27.8	9	66	22	111	64	3	1	30	1.16
17150459--17150743	10	28.7	10	64	20	75	63	3	2	30	1.22
17150447--17150634	9	19.6	10	68	22	63	63	2	1	33	1.13
17150478--17150659	21	9.0	21	71	18	86	62	3	1	32	1.21
17150421--17150580	17	9.3	17	71	20	102	66	1	1	30	1.10
17150461--17150744	92	3.2	88	74	16	203	63	3	2	30	1.22
17150658--17150734	33	2.4	33	91	2	120	67	2	5	24	1.24
17151380--17151432	20	2.7	20	77	8	56	39	0	1	58	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132