genome.fa.s12.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  68  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19425214--19425290	37	2.1	37	80	9	86	28	6	2	62	1.33
19425647--19425688	22	1.9	22	85	9	59	26	9	11	52	1.68
19427158--19427196	16	2.4	16	83	8	53	35	0	0	64	0.94
19429572--19429612	16	2.5	17	80	15	50	39	2	0	58	1.11
19429574--19429636	25	2.5	24	73	14	65	36	1	1	60	1.16
19429592--19429690	34	2.8	35	79	13	89	44	1	1	53	1.14
19429600--19429685	35	2.5	34	79	12	86	45	0	1	53	1.07
19430222--19430261	9	4.3	9	84	6	53	40	0	2	57	1.12
19431555--19431642	37	2.4	37	92	0	140	39	15	15	28	1.89
19431593--19431798	104	2.0	104	85	0	277	37	16	15	30	1.89
19431453--19431746	141	2.1	141	83	2	358	36	15	17	29	1.91
19431696--19431789	36	2.6	36	84	5	118	42	17	10	29	1.82
19434100--19434246	28	5.2	28	80	3	163	40	25	10	23	1.86
19434318--19434417	27	3.6	27	75	10	78	49	24	7	20	1.73
19434341--19434424	27	3.1	27	75	14	84	50	22	7	20	1.72
19443125--19443209	26	3.3	26	73	6	73	31	18	18	30	1.96
19444434--19444472	17	2.4	16	91	4	60	0	28	0	71	0.86
19444434--19444472	8	4.8	8	90	6	60	0	28	0	71	0.86
19452967--19453162	30	6.6	30	75	8	141	38	3	22	34	1.72
19452989--19453194	29	7.0	28	76	11	137	39	3	22	34	1.71
19452972--19453194	59	3.8	59	77	11	210	39	3	21	34	1.71
19456983--19457033	11	5.0	10	84	11	52	84	0	15	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19456986--19457032	14	3.3	14	85	14	69	87	0	12	0	0.55
19456983--19457033	10	5.3	9	84	11	66	84	0	15	0	0.63
19456986--19457038	14	3.8	14	83	14	65	83	0	16	0	0.66
19457879--19457927	11	4.6	10	82	12	62	85	0	12	2	0.68
19457879--19457929	22	2.4	21	90	3	75	84	0	13	1	0.71
19458856--19458880	13	1.9	13	100	0	50	48	0	44	8	1.32
19459127--19459771	39	16.6	38	79	6	548	26	30	17	25	1.97
19459127--19459769	78	8.2	77	84	2	678	26	30	17	25	1.97
19459124--19459988	117	7.3	115	78	8	734	26	30	17	24	1.97
19459166--19459769	156	3.9	156	87	1	782	26	30	17	25	1.97
19459776--19459901	39	3.2	38	72	16	114	26	30	18	23	1.97
19459642--19459907	133	2.0	133	87	2	381	25	29	19	24	1.99
19459776--19459989	78	2.7	78	85	4	263	27	30	18	23	1.97
19459843--19459989	39	3.8	39	79	3	179	25	33	17	23	1.96
19459962--19460013	25	2.1	25	96	0	95	25	30	17	26	1.97
19459923--19460043	64	1.9	64	87	3	181	27	31	14	27	1.94
19462047--19462253	59	3.5	59	76	2	182	35	27	4	33	1.77
19462043--19462208	30	5.5	30	78	7	149	36	27	2	34	1.70
19470342--19470382	20	2.1	20	86	13	59	14	2	12	70	1.26
19472521--19472563	20	2.0	22	82	8	54	53	4	13	27	1.60
19474371--19474423	21	2.6	19	80	16	61	28	13	26	32	1.93
19484800--19484838	17	2.3	17	91	8	62	5	23	0	71	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19485130--19485247	56	2.1	56	96	0	218	38	23	6	30	1.81
19494558--19494624	26	2.6	26	73	0	71	28	20	25	25	1.99
19509590--19509635	23	2.0	23	100	0	92	56	0	21	21	1.42
19509627--19509665	16	2.7	15	88	11	55	76	0	5	17	0.96
19510573--19510629	27	2.1	28	90	3	89	43	7	7	42	1.58
19510573--19510638	27	2.3	27	84	10	78	46	6	6	40	1.53
19511113--19511155	18	2.4	18	88	0	59	69	6	13	9	1.35
19516639--19517335	42	17.1	42	78	8	694	25	16	26	30	1.97
19516689--19517335	122	5.3	122	79	9	621	25	17	26	30	1.97
19516646--19517335	80	8.5	82	85	5	669	25	16	26	30	1.97
19517604--19518310	99	7.2	98	78	8	405	16	30	17	34	1.93
19517625--19518203	149	3.9	146	78	8	501	16	30	18	33	1.93
19517599--19518154	248	2.2	248	81	5	610	16	30	17	34	1.93
19517633--19518309	198	3.4	198	78	5	547	16	30	17	34	1.93
19518752--19518956	112	1.8	112	92	0	347	39	9	22	28	1.86
19519269--19519298	13	2.4	13	94	5	53	0	10	0	90	0.47
19519266--19519315	11	4.6	11	78	14	50	0	22	0	78	0.76
19519268--19519315	19	2.5	20	82	3	53	0	20	0	79	0.74
19519755--19519925	81	2.1	81	94	1	299	28	15	16	39	1.90
19530051--19530080	16	1.9	15	93	6	51	40	13	20	26	1.89
19530445--19530510	34	1.9	34	82	11	82	22	19	10	46	1.80
19530443--19530515	17	4.3	17	79	5	67	21	23	9	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19530799--19530840	10	4.3	10	81	6	59	23	0	21	54	1.44
19530799--19530836	19	2.0	19	89	0	58	23	0	23	52	1.47
19550310--19550343	16	2.1	17	94	5	61	52	23	5	17	1.66
19551447--19551602	30	5.2	30	80	3	143	36	19	7	37	1.79
19551410--19551593	30	6.2	31	76	9	118	35	18	6	39	1.77
19551417--19551602	60	3.1	60	75	9	173	36	18	6	38	1.78
19563492--19563725	40	6.0	38	76	11	170	33	24	17	24	1.96
19563449--19563679	79	2.9	78	80	5	241	34	23	16	25	1.95
19563878--19564060	101	1.8	101	84	2	251	33	18	20	27	1.96
19565453--19565660	30	6.9	30	74	6	136	36	22	6	34	1.80
19565461--19565672	89	2.4	89	83	5	248	36	23	6	33	1.81
19572203--19572565	184	2.0	184	91	0	591	29	19	17	33	1.95
19578135--19578171	8	4.3	9	80	13	51	29	2	0	67	1.04
19578117--19578167	16	3.3	15	84	10	59	29	3	0	66	1.09
19578117--19578167	8	6.7	7	76	24	50	29	3	0	66	1.09
19582332--19582394	26	2.4	27	73	7	67	25	25	22	26	2.00
19582968--19582992	13	1.9	13	100	0	50	40	4	8	48	1.51
19583965--19584033	21	3.3	21	76	11	70	30	28	15	24	1.96
19590552--19590598	18	2.6	18	86	0	67	14	25	6	53	1.65
19596606--19596656	18	2.8	18	87	0	75	7	27	11	52	1.65
19605762--19605810	25	1.9	25	87	4	71	63	4	0	32	1.13
19605773--19605809	9	4.3	9	80	13	51	67	2	0	29	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19613624--19613686	33	1.9	33	96	0	117	25	9	36	28	1.87
19624124--19624154	16	1.9	16	93	0	53	61	0	16	22	1.34
19641895--19642067	30	5.7	30	76	13	158	38	3	23	34	1.72
19641897--19642042	62	2.4	62	77	11	149	41	4	21	33	1.72
19642182--19642248	34	1.9	34	82	8	82	62	1	13	22	1.39
19643461--19643571	46	2.4	46	84	1	143	21	18	25	35	1.95
19643494--19644424	78	11.7	78	76	10	700	25	16	25	32	1.96
19643494--19644424	40	23.4	39	75	11	675	25	16	25	32	1.96
19643494--19644432	120	7.9	118	78	9	793	24	16	25	33	1.96
19643921--19644432	233	2.2	236	85	5	689	24	17	23	34	1.96
19644663--19645340	50	13.7	50	76	4	600	18	31	16	33	1.93
19644656--19645343	99	6.9	99	83	3	767	18	31	16	33	1.93
19644658--19645343	149	4.6	149	82	2	772	18	31	16	33	1.93
19645758--19645970	110	1.9	114	86	4	308	38	12	20	28	1.89
19646273--19646316	18	2.4	18	82	14	54	4	18	0	77	0.94
19646266--19646332	31	2.2	31	81	5	73	2	23	0	73	0.97
19647065--19647111	17	2.8	16	84	12	58	0	19	0	80	0.70
19647069--19647112	10	4.7	9	80	8	52	0	18	0	81	0.68
19648987--19649019	17	1.9	17	93	0	57	78	0	18	3	0.87
19656036--19656074	15	2.6	15	91	0	60	17	15	28	38	1.91
19664028--19664058	16	1.9	16	93	0	53	48	16	12	22	1.80
19676910--19676945	17	2.2	17	90	5	56	19	13	11	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19691613--19691689	26	2.9	26	78	1	82	28	19	20	31	1.97
19693941--19694405	161	2.9	158	80	5	501	36	15	13	33	1.88
19696364--19696412	17	2.7	18	81	9	64	26	2	2	69	1.10
19697685--19697796	57	2.0	57	84	10	149	33	14	3	49	1.60
19697688--19697832	58	2.5	57	80	6	161	31	13	5	48	1.65
19697792--19697858	31	2.2	31	86	0	89	28	8	7	55	1.58
19698044--19698112	29	2.3	31	82	5	88	57	13	2	26	1.49
19700023--19700065	18	2.4	18	88	7	61	46	0	0	53	1.00
19703080--19703113	9	3.7	9	88	4	50	47	0	2	50	1.16
19703402--19703459	30	1.9	31	86	10	84	24	12	0	63	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132