genome.fa.s12.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  112  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33964954--33964991	20	1.9	20	88	0	58	42	13	18	26	1.87
33965406--33965449	22	2.0	22	90	0	70	29	15	20	34	1.94
33966218--33966929	39	18.4	39	71	7	448	22	19	33	25	1.97
33966204--33966929	117	6.2	117	74	7	503	22	19	33	24	1.97
33966670--33966929	116	2.2	117	89	0	387	19	21	35	23	1.96
33966830--33966948	39	3.1	38	73	21	111	20	26	32	21	1.97
33966787--33966948	77	2.1	77	86	2	227	20	24	33	21	1.97
33978469--33978755	30	9.7	30	82	4	253	39	1	24	35	1.64
33978469--33978709	59	4.1	59	81	7	242	39	1	24	34	1.64
33980302--33980349	23	2.1	23	88	0	69	20	4	18	56	1.58
33980353--33980432	33	2.4	32	83	8	97	56	5	1	37	1.29
33980356--33980432	34	2.3	33	88	2	109	58	5	1	35	1.29
33980356--33980432	17	4.6	17	80	3	93	58	5	1	35	1.29
33981881--33981910	15	2.0	15	93	0	51	43	6	0	50	1.28
33982543--33982584	19	2.2	20	91	4	68	38	42	0	19	1.51
33989162--33989205	22	2.0	23	86	4	63	52	4	4	38	1.42
33996047--33996117	19	3.7	19	71	0	70	26	5	2	64	1.29
33997226--33997258	17	1.9	17	100	0	66	6	21	6	66	1.35
33997587--33997648	29	2.1	29	81	0	70	35	3	6	54	1.42
33998429--33998462	17	1.9	18	94	5	61	29	2	26	41	1.70
34001673--34001713	17	2.6	16	88	11	59	4	21	7	65	1.37
34003151--34003195	17	2.6	17	82	0	63	71	2	0	26	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34010158--34010218	21	2.7	23	69	20	58	42	6	0	50	1.28
34031825--34031881	30	1.9	30	96	0	105	19	22	14	43	1.86
34033765--34033850	43	2.0	43	100	0	172	37	6	20	34	1.80
34046889--34046921	2	17.0	2	93	6	59	51	0	0	48	1.00
34051454--34051519	32	2.1	32	91	5	107	42	6	4	46	1.48
34052897--34052924	11	2.5	11	100	0	56	82	0	17	0	0.68
34055388--34055561	7	24.9	7	88	0	168	13	44	14	27	1.83
34055544--34055609	21	3.1	21	77	0	78	7	33	13	45	1.72
34055557--34055609	7	7.6	7	73	0	52	5	32	13	49	1.65
34055544--34055603	14	4.3	14	78	0	66	8	33	13	45	1.73
34059988--34060027	22	1.9	21	85	10	55	37	17	12	32	1.87
34060853--34061056	101	2.0	101	96	0	372	33	11	19	35	1.87
34063234--34063265	16	1.9	17	93	6	57	40	6	0	53	1.26
34065994--34066065	21	3.4	21	67	7	56	26	15	25	33	1.95
34067634--34067833	96	2.1	96	94	0	348	52	13	5	29	1.62
34071211--34071249	18	2.2	18	86	4	53	51	5	12	30	1.62
34071349--34071392	18	2.5	18	77	3	54	36	15	2	45	1.59
34073210--34073283	34	2.2	34	87	4	105	39	16	9	35	1.81
34076078--34076123	25	1.9	23	86	8	65	34	4	4	56	1.39
34076885--34076930	23	2.0	23	100	0	92	26	13	13	47	1.78
34080957--34081007	2	25.5	2	100	0	102	50	0	0	49	1.00
34085698--34085830	69	1.9	68	80	7	153	36	8	6	48	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34085828--34085875	25	1.9	25	91	0	78	45	8	0	45	1.33
34088839--34088866	6	4.7	6	100	0	56	35	0	14	50	1.43
34100904--34100934	3	10.3	3	100	0	62	67	0	0	32	0.91
34103691--34103715	12	2.1	12	100	0	50	36	24	8	32	1.84
34105833--34105985	74	2.1	73	83	3	191	47	16	16	20	1.83
34106892--34106916	13	1.9	13	100	0	50	32	16	8	44	1.76
34109662--34109723	32	1.9	32	96	0	115	29	9	22	38	1.86
34114552--34114621	30	2.3	29	81	13	79	55	10	0	34	1.33
34120463--34120545	2	41.5	2	80	0	94	44	4	4	45	1.46
34120463--34120545	20	4.2	20	88	0	112	44	4	4	45	1.46
34120545--34120587	6	7.2	6	84	10	52	0	6	46	46	1.30
34131891--34131977	17	4.3	19	71	23	70	48	0	0	51	1.00
34131891--34131947	10	6.0	10	71	17	50	43	0	0	56	0.99
34131894--34131959	27	2.5	26	85	9	98	50	0	0	50	1.00
34135466--34135508	21	2.0	23	90	9	72	53	0	0	46	1.00
34136654--34136687	11	2.9	12	91	8	61	8	17	23	50	1.74
34136778--34136863	23	3.8	22	84	6	100	27	11	20	39	1.88
34136777--34136864	46	1.9	46	86	4	124	27	11	20	40	1.86
34136829--34136875	23	2.0	23	84	8	60	38	10	17	34	1.84
34139531--34139570	4	10.0	4	100	0	80	50	25	0	25	1.50
34141198--34141226	2	14.5	2	100	0	58	48	0	0	51	1.00
34142529--34142568	19	2.0	20	85	9	55	42	5	0	52	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34143264--34143315	27	1.9	27	92	0	86	25	32	25	17	1.97
34143641--34143674	17	2.0	17	94	0	59	44	0	2	52	1.16
34144070--34144150	32	2.5	32	80	11	85	50	2	4	41	1.37
34144095--34144162	33	2.1	32	83	2	82	52	0	4	42	1.21
34145677--34145752	26	2.8	26	78	4	71	56	10	1	31	1.41
34149111--34149185	27	2.8	27	93	0	123	20	33	30	16	1.94
34149809--34149901	7	13.1	7	72	15	75	55	2	3	38	1.28
34149809--34149901	20	4.4	21	74	14	75	55	2	3	38	1.28
34149845--34149926	27	3.1	27	66	16	82	56	3	4	35	1.39
34149857--34149935	24	3.2	24	70	22	81	54	3	5	36	1.41
34149823--34149942	51	2.4	51	97	2	226	55	3	3	37	1.33
34149856--34149937	27	3.1	27	65	28	77	54	3	4	36	1.39
34150484--34150742	137	2.0	127	83	10	326	33	24	11	30	1.90
34151635--34151684	6	8.3	6	100	0	100	52	0	32	16	1.44
34154292--34154537	90	2.8	90	84	3	302	41	15	22	20	1.90
34158181--34158313	70	1.9	67	84	4	176	43	12	11	32	1.78
34165984--34166043	30	1.9	32	90	6	97	43	3	5	48	1.41
34172895--34172970	11	6.8	11	77	8	82	43	2	1	52	1.23
34172895--34172986	17	5.5	16	76	14	80	44	2	1	52	1.20
34172898--34172969	6	12.7	6	75	16	64	41	2	1	54	1.23
34174983--34175312	30	11.0	30	82	4	319	36	22	3	36	1.72
34175268--34175503	59	4.0	56	76	8	197	31	29	3	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34186903--34187587	76	9.1	76	86	5	935	32	15	19	32	1.93
34187899--34187951	11	4.8	11	75	9	54	43	3	0	52	1.19
34187902--34187964	28	2.2	28	81	10	67	41	3	0	55	1.16
34189975--34190301	30	10.9	30	81	4	297	37	23	2	36	1.69
34189975--34190301	60	5.5	60	80	3	329	37	23	2	36	1.69
34189963--34190282	119	2.7	120	82	7	384	38	22	3	36	1.70
34190274--34190470	59	3.4	58	75	2	207	29	29	4	36	1.76
34191757--34191811	17	3.4	16	76	11	58	38	0	1	60	1.08
34192336--34192368	14	2.4	14	90	10	50	78	0	0	21	0.75
34200723--34200773	23	2.1	25	82	7	61	58	1	3	35	1.28
34201027--34201065	6	6.3	6	90	3	51	33	12	0	53	1.39
34209193--34209282	41	2.2	41	84	4	110	30	16	23	30	1.96
34210660--34210732	17	4.1	18	81	12	80	34	2	6	56	1.40
34210684--34210742	23	2.6	22	83	5	64	42	0	5	52	1.23
34210684--34210740	6	9.8	6	79	7	55	43	0	5	50	1.24
34210685--34210740	17	3.2	17	82	9	69	44	0	5	50	1.25
34211825--34211867	17	2.6	16	79	13	50	72	2	20	4	1.14
34212502--34212616	30	3.8	30	83	5	126	40	22	4	32	1.74
34214477--34214619	72	2.0	72	98	0	277	24	26	20	27	1.99
34218097--34218145	24	2.0	26	88	8	75	44	0	0	55	0.99
34222190--34222247	25	2.4	24	75	18	57	8	39	1	50	1.43
34242133--34242173	18	2.3	18	87	4	57	34	9	4	51	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34242964--34243116	56	2.7	57	82	7	193	45	1	1	51	1.20
34257659--34257685	13	2.1	13	100	0	54	33	14	14	37	1.88
34262393--34262553	80	2.0	80	92	0	268	35	26	22	15	1.94
34272063--34272102	19	2.0	20	85	4	55	35	7	2	55	1.42
34273413--34273500	6	15.8	6	73	17	66	40	2	2	54	1.25
34273413--34273500	17	5.3	16	78	9	88	40	2	2	54	1.25
34273419--34273498	27	2.9	28	85	12	105	40	2	2	55	1.27
34275519--34276086	30	19.0	30	84	5	634	38	22	3	35	1.71
34287809--34288587	68	11.4	68	93	0	1281	34	14	20	30	1.93
34288985--34289138	6	25.8	6	71	18	108	40	2	0	56	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132