genome.fa.s12.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  109  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33077925--33077958	12	2.8	12	86	0	50	26	8	23	41	1.83
33084491--33084526	17	2.1	17	89	0	54	19	27	0	52	1.46
33089816--33089863	24	2.0	24	91	0	78	20	33	0	45	1.52
33089836--33089877	17	2.4	17	92	4	66	23	26	0	50	1.50
33094946--33094982	17	2.2	18	90	9	60	43	10	0	45	1.39
33097623--33097648	4	6.5	4	100	0	52	50	0	0	50	1.00
33109571--33109670	22	4.8	21	74	15	91	4	6	24	66	1.32
33109686--33109761	40	1.9	39	86	2	107	11	3	19	64	1.42
33112215--33112288	27	2.8	24	75	13	67	66	6	0	27	1.17
33113224--33113283	22	2.9	21	78	7	61	73	3	1	21	1.07
33114220--33114275	9	6.1	9	80	12	51	35	1	3	58	1.26
33114406--33114453	25	1.9	25	95	0	87	68	6	4	20	1.28
33119943--33119976	16	2.1	16	94	0	59	61	0	0	38	0.96
33119943--33119982	16	2.7	14	88	7	53	57	0	0	42	0.98
33130002--33130109	6	18.0	6	75	14	89	49	0	1	48	1.18
33130006--33130070	17	4.1	15	81	15	78	43	0	3	53	1.16
33130010--33130073	31	2.1	31	91	5	103	43	0	3	53	1.16
33129992--33130072	11	7.5	11	72	19	64	41	0	3	54	1.18
33130002--33130109	42	2.6	41	80	7	110	49	0	1	48	1.18
33130187--33130225	12	2.9	14	81	14	55	38	28	17	15	1.91
33131989--33132196	30	6.9	30	85	2	240	36	22	3	37	1.71
33131989--33132165	90	2.0	90	93	2	302	37	21	3	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33131997--33132196	90	2.2	90	86	7	282	35	23	3	37	1.72
33132169--33132770	59	10.2	57	85	4	738	31	26	4	36	1.77
33132169--33132770	177	3.4	177	89	0	918	31	26	4	36	1.77
33132169--33132770	118	5.1	117	89	2	848	31	26	4	36	1.77
33136576--33136647	17	4.2	17	75	12	58	25	0	6	68	1.15
33136593--33136632	8	4.9	8	84	3	53	22	0	2	75	0.93
33136568--33136647	25	3.1	26	80	10	101	25	0	6	68	1.12
33136769--33136937	41	4.1	41	83	4	214	17	29	21	31	1.96
33138368--33138467	50	2.0	50	100	0	200	30	14	26	30	1.94
33139472--33139522	23	2.2	24	92	3	86	47	19	27	5	1.73
33139472--33139528	23	2.4	23	88	2	69	50	17	24	7	1.70
33148775--33148823	25	2.0	25	87	0	71	36	0	4	59	1.17
33161179--33161268	44	2.1	45	83	6	114	41	1	12	45	1.49
33162830--33162869	21	2.0	21	85	5	55	52	0	0	47	1.00
33163736--33163843	49	2.2	51	83	9	134	34	7	6	51	1.55
33168398--33168437	2	20.5	2	94	5	73	50	0	0	50	1.00
33170950--33171098	62	2.4	62	83	10	214	19	1	32	46	1.58
33173568--33173755	52	3.6	51	85	2	243	28	17	22	31	1.96
33186023--33186262	52	4.6	52	89	1	347	28	15	22	32	1.95
33186945--33186997	21	2.5	21	90	6	81	30	15	24	30	1.95
33189566--33189636	37	1.9	37	86	11	101	63	7	0	29	1.21
33192426--33192491	27	2.4	27	97	0	123	19	28	28	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33192815--33192848	17	2.0	17	94	0	59	44	0	2	52	1.16
33193537--33193599	31	2.1	31	85	8	85	47	4	0	47	1.23
33195943--33195983	6	6.8	6	83	10	57	17	2	14	65	1.37
33196057--33196132	26	2.8	26	78	4	71	56	10	1	31	1.41
33199118--33199142	5	5.0	5	100	0	50	40	0	0	60	0.97
33200689--33200730	21	2.0	21	85	0	57	2	54	0	42	1.13
33200724--33200766	18	2.4	18	88	0	59	9	13	6	69	1.35
33208860--33208924	34	1.9	33	90	9	105	46	12	3	38	1.57
33216737--33216774	17	2.2	18	86	13	53	55	0	2	42	1.14
33233107--33233157	24	2.1	24	96	0	93	21	11	9	56	1.63
33236802--33236853	25	2.1	25	92	0	86	23	11	7	57	1.59
33237342--33237372	7	4.6	7	96	4	55	41	0	0	58	0.98
33240526--33240567	22	1.9	22	85	9	59	47	4	0	47	1.23
33240560--33240596	19	2.0	18	89	5	56	59	2	0	37	1.12
33241084--33241140	29	1.9	30	82	3	71	64	1	3	29	1.20
33243740--33243839	50	2.0	50	84	11	134	31	17	5	47	1.69
33243739--33243845	51	2.1	50	83	10	137	29	18	4	46	1.69
33247717--33247752	16	2.2	16	90	9	56	19	0	8	72	1.10
33248097--33248134	19	2.0	19	85	10	51	31	0	0	68	0.90
33254907--33254941	18	1.9	18	88	0	52	2	28	0	68	1.04
33255883--33255929	25	1.9	25	91	4	78	63	10	0	25	1.26
33255880--33255974	28	3.6	28	77	11	76	60	8	4	27	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33256162--33256238	31	2.6	30	79	6	75	36	9	11	42	1.73
33257093--33257129	18	2.0	18	89	5	56	27	2	0	70	1.01
33257393--33257428	18	2.1	17	89	5	54	63	0	0	36	0.94
33258094--33258124	1	31.0	1	100	0	62	0	0	100	0	0.00
33276072--33276102	6	5.2	6	92	0	53	54	0	0	45	0.99
33276201--33276250	14	3.6	14	78	2	57	38	28	14	20	1.91
33277601--33277939	162	2.1	162	94	1	590	25	16	12	45	1.82
33278040--33278230	29	6.5	30	72	14	132	31	26	5	36	1.79
33278040--33278238	59	3.4	59	88	3	296	30	27	6	35	1.81
33278041--33278275	117	2.0	118	83	7	300	29	28	6	35	1.82
33289230--33289290	26	2.3	28	72	16	67	50	0	3	45	1.17
33290608--33290644	2	18.5	2	100	0	74	0	48	0	51	1.00
33292921--33293108	41	4.5	41	83	6	200	37	10	26	25	1.89
33292921--33293108	82	2.2	85	83	3	238	37	10	26	25	1.89
33294990--33295015	2	13.0	2	100	0	52	50	0	0	50	1.00
33295978--33296023	14	3.2	15	74	20	53	23	2	6	67	1.25
33297254--33297282	10	3.0	10	95	5	51	37	0	0	62	0.96
33306872--33306911	15	2.7	16	85	14	59	77	5	17	0	0.94
33309911--33309980	23	3.0	24	72	2	61	35	15	14	34	1.88
33329879--33330050	59	2.9	58	82	5	197	26	8	10	54	1.63
33330209--33330331	31	4.1	30	68	12	83	47	12	14	25	1.79
33330771--33330809	20	2.0	20	84	0	51	64	5	2	28	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33330785--33330832	23	2.0	23	84	4	60	72	0	2	25	0.95
33331257--33331322	31	2.1	31	86	5	89	39	13	9	37	1.77
33334937--33335093	84	1.9	84	80	5	183	40	17	22	19	1.91
33335036--33335349	84	3.7	82	80	8	301	42	16	20	20	1.89
33335032--33335378	168	2.1	168	80	4	387	41	16	21	21	1.90
33335371--33335707	81	4.2	81	93	1	550	36	21	20	21	1.96
33339811--33339843	17	1.9	17	93	0	57	15	0	3	81	0.80
33340481--33340572	30	3.1	30	73	9	89	40	13	9	36	1.77
33340532--33340614	30	2.8	29	76	15	87	38	13	12	36	1.82
33344123--33344349	30	7.6	31	76	11	163	40	1	21	37	1.62
33344199--33344353	59	2.6	58	80	8	161	42	0	19	37	1.56
33344276--33344363	29	3.0	28	76	17	90	46	0	18	35	1.49
33344702--33344726	13	1.9	13	100	0	50	64	12	0	24	1.27
33346000--33346213	23	9.5	23	71	14	142	41	21	25	12	1.87
33346054--33346128	39	1.9	39	91	0	123	45	20	22	12	1.83
33346093--33346213	48	2.6	44	83	10	152	39	22	25	12	1.89
33349316--33349340	9	2.8	9	100	0	50	12	0	0	88	0.53
33349699--33349849	74	2.0	74	100	0	302	31	2	10	54	1.48
33349812--33349861	16	3.2	16	73	21	52	34	0	6	60	1.21
33350037--33350105	25	2.7	25	93	4	111	42	2	0	55	1.15
33350040--33350114	30	2.6	30	86	14	97	38	2	0	58	1.12
33354576--33354650	36	2.1	36	100	0	150	33	22	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33358884--33358920	19	1.9	19	88	0	56	54	0	0	45	1.00
33359554--33359631	29	2.9	27	81	11	88	28	6	8	56	1.55
33359554--33359638	28	3.1	28	80	9	86	30	7	8	54	1.57
33360296--33360366	30	2.4	30	85	4	90	46	5	1	46	1.35
33365690--33365849	41	3.9	41	86	4	216	31	18	28	21	1.96
33365683--33365905	41	5.6	41	79	7	210	31	17	28	22	1.96
33375479--33375604	63	2.0	63	98	0	243	17	24	12	45	1.83
33381454--33381524	19	3.7	18	75	9	70	35	2	7	54	1.42
33381644--33381684	7	5.9	7	100	0	82	43	29	12	14	1.82
33388066--33388120	24	2.3	24	81	6	67	30	9	12	47	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132