genome.fa.s12.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  30  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8190195--8190222	14	2.0	14	100	0	56	42	0	0	57	0.99
8191085--8191119	16	2.2	16	100	0	70	28	0	0	71	0.86
8197240--8197311	29	2.4	29	88	11	103	51	0	1	47	1.09
8197240--8197318	30	2.7	27	81	16	88	49	0	1	49	1.09
8203677--8203762	42	2.0	42	86	4	120	22	13	25	38	1.91
8205630--8205670	22	2.0	22	90	9	68	63	4	0	31	1.15
8208507--8208954	195	2.3	194	82	3	533	25	26	19	27	1.99
8210733--8210767	18	1.9	18	88	0	52	60	17	5	17	1.55
8213550--8213590	22	2.0	20	90	9	64	31	4	24	39	1.76
8213557--8213622	22	3.0	22	82	6	62	27	10	25	36	1.89
8213871--8214009	69	2.0	69	100	0	278	35	17	18	28	1.93
8220564--8220601	17	2.1	18	85	9	51	36	0	10	52	1.36
8221088--8221175	19	4.8	18	75	19	74	36	2	2	59	1.23
8221086--8221175	10	9.8	9	67	17	51	35	2	2	60	1.22
8228691--8228742	23	2.3	23	96	0	95	32	11	0	55	1.36
8238181--8238230	25	2.0	25	96	0	91	50	8	16	26	1.72
8238514--8238570	29	2.0	28	86	6	80	63	1	5	29	1.27
8238689--8238719	16	2.0	15	93	6	53	41	0	0	58	0.98
8241919--8241945	5	5.4	5	100	0	54	22	0	37	40	1.54
8244976--8245189	23	9.5	23	74	14	160	42	21	24	11	1.86
8245030--8245104	39	1.9	39	94	0	132	45	21	21	12	1.84
8245069--8245189	48	2.6	46	84	7	163	40	23	24	11	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8246215--8246280	33	1.9	36	84	9	93	9	31	6	53	1.57
8247151--8247182	17	1.9	17	93	6	57	21	6	37	34	1.79
8247186--8247223	19	2.0	19	85	10	51	5	2	34	57	1.35
8247779--8248270	78	6.3	77	83	4	476	25	18	30	25	1.98
8247744--8248202	39	11.8	39	66	5	144	24	18	31	26	1.97
8256223--8256407	51	3.6	51	88	1	255	28	23	14	33	1.94
8263451--8263678	51	4.5	51	89	1	332	30	21	13	34	1.92
8264859--8265007	39	3.8	39	74	5	140	21	19	36	22	1.95
8265344--8265558	49	4.4	48	77	4	160	15	29	16	37	1.90
8265394--8265556	49	3.3	49	77	6	168	15	30	17	37	1.90
8265295--8265613	99	3.3	98	78	6	267	16	30	15	37	1.90
8266574--8266635	28	2.3	27	86	5	88	0	22	0	77	0.77
8266577--8266646	9	7.4	9	76	9	59	1	18	0	80	0.80
8266575--8266635	19	3.3	19	78	13	65	0	21	0	78	0.75
8279485--8279532	24	1.9	26	87	8	73	20	0	4	75	0.97
8284969--8285014	25	1.9	23	86	8	65	34	4	6	54	1.46
8286039--8286331	155	1.9	156	85	3	412	23	13	18	43	1.86
8286372--8286423	23	2.3	21	79	20	61	17	5	1	75	1.10
8292882--8292919	20	1.9	20	88	0	58	65	2	13	18	1.37
8300934--8300969	2	18.0	2	100	0	72	50	0	50	0	1.00
8304910--8305341	59	7.4	59	92	0	697	36	5	27	31	1.78
8305438--8305913	161	2.9	162	92	2	780	46	12	15	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8307187--8307217	15	2.1	15	100	0	62	12	12	54	19	1.70
8307381--8307488	6	18.0	6	75	14	89	48	1	0	49	1.18
8307424--8307473	25	2.0	25	88	0	73	54	4	0	42	1.19
8307417--8307480	31	2.1	31	91	5	103	53	3	0	43	1.16
8307395--8307488	42	2.3	43	83	5	113	50	2	0	47	1.13
8307418--8307488	17	4.4	16	79	16	85	54	2	0	42	1.14
8307734--8307792	30	2.0	30	83	6	75	37	20	3	38	1.69
8307726--8307884	59	2.7	59	74	12	146	34	22	5	38	1.76
8308867--8308956	45	2.0	46	86	6	130	31	16	21	31	1.95
8308871--8308973	45	2.3	45	82	1	125	33	15	19	32	1.93
8311363--8311397	3	11.7	3	100	0	70	31	0	0	68	0.90
8319691--8319727	19	2.0	19	89	5	58	24	0	10	64	1.25
8319692--8319735	19	2.3	19	84	7	54	25	0	11	63	1.27
8319916--8320127	114	1.9	112	83	5	275	39	10	13	35	1.80
8327940--8328170	113	2.0	114	85	5	317	40	11	13	34	1.81
8331516--8331566	23	2.2	23	82	6	59	11	25	13	49	1.76
8334928--8334986	25	2.3	26	80	16	70	28	25	18	27	1.98
8334928--8334988	26	2.4	25	81	8	70	27	27	18	26	1.98
8339753--8339803	20	2.7	19	82	8	68	72	0	23	3	1.01
8340137--8340180	20	2.2	20	88	4	63	43	2	4	50	1.35
8340177--8340226	26	2.0	25	84	4	64	54	2	2	42	1.23
8340776--8340811	2	18.5	2	94	5	65	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8345133--8345455	162	2.0	162	95	0	574	23	13	21	40	1.89
8349397--8349558	81	2.0	80	96	1	297	54	1	13	30	1.50
8359981--8360016	18	2.1	17	94	5	63	38	16	0	44	1.48
8370313--8370369	29	1.9	29	85	3	78	38	8	7	45	1.62
8370695--8370738	20	2.2	20	92	8	72	52	6	4	36	1.49
8372860--8372993	19	7.2	19	78	5	139	32	18	24	24	1.97
8372860--8372993	37	3.6	36	85	4	160	32	18	24	24	1.97
8372860--8372993	56	2.4	56	83	5	164	32	18	24	24	1.97
8373701--8373758	21	2.8	21	81	0	62	31	13	20	34	1.92
8379038--8379116	29	2.7	29	88	0	113	22	40	21	15	1.90
8383066--8383109	23	1.9	23	85	0	61	25	11	11	52	1.70
8383428--8383478	17	3.0	17	88	0	66	52	1	1	43	1.23
8383421--8383478	28	2.1	28	83	0	71	51	1	3	43	1.28
8383550--8383605	29	1.9	29	82	7	69	32	1	12	53	1.49
8385126--8385167	22	1.9	22	85	9	59	66	7	2	23	1.28
8386945--8387115	92	1.8	92	83	2	218	34	15	22	26	1.95
8388479--8388517	16	2.4	16	86	0	60	38	7	28	25	1.83
8388696--8388806	57	1.9	58	89	5	172	51	1	0	46	1.11
8390084--8390126	7	6.1	7	88	0	68	41	39	0	18	1.51
8390067--8390123	21	2.7	21	83	5	71	42	36	1	19	1.62
8390493--8390529	18	2.1	18	89	0	56	51	0	0	48	1.00
8397101--8397464	122	3.0	121	88	4	545	39	10	6	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8398740--8398797	29	2.0	29	93	3	100	17	13	13	55	1.70
8398969--8398998	5	6.2	5	92	7	53	23	0	0	76	0.78
8399137--8399235	33	3.4	28	72	15	92	23	19	13	44	1.85
8399153--8399253	33	3.2	32	72	11	100	21	17	12	47	1.81
8399107--8399295	60	3.2	60	87	4	258	23	16	13	46	1.82
8399446--8399639	91	2.1	90	81	5	212	46	14	14	24	1.82
8425136--8425170	17	2.1	17	89	10	54	31	5	0	62	1.18
8429115--8429142	7	4.0	7	100	0	56	42	0	0	57	0.99
8433031--8433064	15	2.3	15	89	0	50	29	26	0	44	1.55
8434892--8434944	23	2.3	23	75	9	56	41	7	9	41	1.66
8435959--8435992	16	2.1	17	88	5	52	14	8	11	64	1.49
8439356--8439394	17	2.3	17	86	0	51	17	12	23	46	1.83
8440956--8441016	32	2.0	32	90	6	99	42	3	3	50	1.34
8441311--8441367	24	2.5	24	82	5	64	38	3	0	57	1.16
8441697--8441738	17	2.4	17	88	4	57	21	21	2	54	1.56
8445742--8445795	26	2.1	25	96	3	99	33	27	7	31	1.84
8450198--8450251	26	2.1	25	93	3	90	35	27	5	31	1.80
8457871--8457927	27	2.1	27	86	0	78	29	21	38	10	1.87
8458110--8458148	4	9.5	4	88	5	60	76	0	23	0	0.78
8458140--8458174	7	5.0	7	96	0	61	60	0	40	0	0.97
8458111--8458172	14	4.4	14	78	11	63	69	0	30	0	0.89
8458530--8458572	21	2.1	21	86	4	61	25	2	13	58	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8458536--8458806	95	2.9	95	91	4	415	36	1	12	48	1.52
8460338--8460422	43	2.0	43	83	4	109	30	12	10	45	1.76
8464362--8464431	4	17.5	4	88	5	106	0	30	0	70	0.88
8464803--8464839	15	2.5	15	100	0	74	21	40	10	27	1.86
8465620--8465682	18	3.6	18	70	16	51	39	0	0	60	0.97
8465764--8465803	18	2.2	18	95	0	71	50	7	5	37	1.53
8467941--8467978	18	2.1	19	85	14	53	18	0	10	71	1.14
8470713--8470745	8	4.2	8	96	3	59	12	0	0	87	0.53
8471314--8471347	17	2.0	17	88	0	50	64	0	0	35	0.94
8486982--8487045	18	3.4	17	74	19	56	20	59	1	18	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132