genome.fa.s12.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  41  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11085354--11085396	15	2.6	17	78	17	54	60	0	32	6	1.23
11087627--11087669	5	8.8	5	87	12	63	58	0	39	2	1.11
11096964--11097008	2	22.5	2	100	0	90	51	0	48	0	1.00
11103507--11103786	58	4.8	59	80	6	225	39	2	22	35	1.69
11103507--11103794	30	9.8	29	77	9	212	39	3	22	35	1.70
11104895--11104939	21	2.2	20	84	7	56	46	2	0	51	1.13
11105606--11105650	23	2.0	23	90	0	72	53	0	0	46	1.00
11105607--11105652	11	4.1	11	80	5	56	54	0	0	45	0.99
11105904--11106407	92	5.5	92	95	0	900	32	17	15	34	1.91
11116452--11116522	21	3.4	21	76	0	79	42	23	12	21	1.87
11122681--11122759	20	3.8	20	79	11	88	8	5	18	67	1.37
11122723--11122789	31	2.2	30	91	2	107	11	2	16	68	1.32
11122717--11122767	20	2.6	19	81	3	57	11	3	15	68	1.34
11122770--11122860	35	2.6	35	79	8	112	7	7	19	64	1.44
11122775--11122840	12	5.6	12	80	3	62	6	7	19	66	1.38
11122996--11123046	26	1.9	26	88	4	75	25	0	3	70	1.04
11123007--11123081	29	2.7	26	80	10	78	29	0	5	65	1.15
11123842--11123901	26	2.4	24	83	10	75	31	1	0	66	1.01
11129501--11129527	10	2.7	10	100	0	54	81	7	0	11	0.87
11130143--11130458	152	2.1	152	96	0	587	25	18	18	37	1.94
11136836--11136975	69	2.0	69	84	0	181	50	6	5	37	1.50
11138238--11138289	4	12.5	4	95	4	86	75	0	25	0	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11138340--11138383	20	2.2	20	84	8	54	36	2	0	61	1.09
11141259--11141339	28	2.9	28	81	0	81	20	3	28	46	1.68
11141900--11141931	15	2.1	16	88	11	50	18	28	28	25	1.98
11144176--11144220	21	2.2	21	92	4	74	60	13	0	26	1.34
11144295--11144372	23	3.3	22	71	20	59	65	8	1	24	1.29
11144602--11144635	4	9.0	4	87	12	54	0	26	0	73	0.83
11144592--11144643	22	2.3	23	83	6	72	1	30	0	67	1.02
11144607--11144635	14	2.1	14	100	0	58	0	27	0	72	0.85
11152252--11152330	33	2.5	33	82	15	89	39	0	0	60	0.97
11152717--11152755	16	2.4	16	86	0	60	43	5	20	30	1.73
11152788--11152890	44	2.5	41	82	9	120	31	3	24	40	1.73
11152768--11152876	44	2.5	44	92	0	182	31	2	25	40	1.70
11152975--11153102	56	2.2	56	81	10	134	51	3	0	44	1.22
11166131--11166299	83	2.0	83	95	0	302	35	14	16	33	1.90
11167184--11167353	58	2.9	59	82	7	202	42	1	3	52	1.29
11167433--11167595	73	2.2	73	96	1	299	36	25	1	36	1.67
11167471--11167583	16	6.5	16	71	16	82	37	24	1	36	1.66
11181168--11181212	16	2.6	17	82	6	56	28	6	0	64	1.19
11184088--11184112	6	4.2	6	100	0	50	16	32	0	52	1.44
11184900--11184935	3	12.3	3	88	5	56	66	2	0	30	1.06
11186108--11186173	21	3.1	21	91	2	105	22	0	33	43	1.54
11186543--11186605	23	2.6	23	80	14	65	68	0	25	6	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11191982--11192017	3	12.3	3	88	5	56	66	2	0	30	1.06
11193065--11193137	7	10.7	7	76	5	60	36	23	20	19	1.95
11193072--11193130	20	3.0	20	87	0	82	37	22	20	20	1.95
11193124--11193174	21	2.4	21	76	0	57	33	31	19	15	1.93
11193124--11193186	31	2.0	32	87	3	92	30	28	22	19	1.98
11193219--11193248	15	2.0	15	93	0	51	20	3	33	43	1.68
11193232--11193299	21	3.2	21	91	2	109	22	0	33	44	1.53
11208105--11208158	22	2.5	22	93	0	99	18	24	11	46	1.81
11208145--11208177	12	2.8	12	100	0	66	27	24	6	42	1.78
11214046--11214191	58	2.5	58	82	11	183	46	2	1	50	1.21
11214275--11214379	46	2.5	44	82	13	114	37	25	5	31	1.80
11214286--11214379	44	2.1	44	86	7	127	37	26	5	30	1.79
11214361--11214448	16	5.5	16	93	4	151	26	29	5	38	1.79
11217331--11217364	10	3.6	9	88	11	50	20	0	2	76	0.92
11217332--11217364	9	3.3	10	91	8	50	18	0	3	78	0.87
11237770--11237848	39	2.0	39	100	0	158	25	20	21	32	1.97
11239375--11239476	45	2.3	45	84	0	132	27	23	9	39	1.86
11246965--11247113	23	6.4	23	77	12	126	44	20	23	11	1.84
11247015--11247113	25	4.1	25	71	21	86	44	21	23	11	1.84
11246965--11247113	71	2.1	69	86	7	203	44	20	23	11	1.84
11249796--11249892	44	2.2	46	85	7	128	40	20	5	34	1.75
11249880--11249917	16	2.4	16	86	0	58	31	28	0	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11251957--11251981	13	1.9	13	100	0	50	52	0	0	48	1.00
11263693--11263988	37	8.0	37	84	4	364	31	31	21	15	1.95
11266618--11266642	3	8.3	3	100	0	50	64	0	0	36	0.94
11268784--11269369	79	7.4	78	82	3	546	25	17	28	29	1.97
11268784--11269369	198	3.0	197	85	3	730	25	17	28	29	1.97
11268779--11269365	119	4.9	120	81	4	580	25	17	27	29	1.97
11269498--11269746	99	2.5	99	84	1	329	16	29	17	36	1.92
11269503--11269742	49	4.9	49	71	5	169	17	30	17	35	1.93
11269503--11269746	50	4.9	50	73	6	199	16	29	17	36	1.92
11270697--11270733	16	2.2	17	95	4	67	0	13	0	86	0.57
11273808--11273833	13	2.0	13	100	0	52	38	23	23	15	1.92
11276749--11276896	67	2.3	65	84	5	199	54	4	6	34	1.48
11280012--11280115	37	2.7	38	76	5	93	31	26	19	22	1.97
11280218--11280254	18	2.1	18	89	0	56	24	27	0	48	1.51
11280550--11280585	18	2.1	18	89	5	56	33	25	0	41	1.55
11285952--11286019	35	1.9	35	96	0	127	33	20	22	23	1.97
11300034--11300064	16	1.9	16	93	0	53	16	25	12	45	1.83
11302099--11302142	23	1.9	23	90	0	70	15	4	11	68	1.36
11303157--11303396	115	2.1	113	83	6	299	16	23	14	46	1.83
11307623--11308000	116	3.3	114	82	5	447	16	26	13	43	1.85
11308778--11308819	5	8.4	5	100	0	84	38	21	0	40	1.53
11309583--11310057	49	9.7	49	74	10	315	17	30	16	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11309557--11310057	148	3.4	148	77	7	407	17	30	16	35	1.92
11309582--11310057	197	2.4	197	83	3	548	17	31	15	35	1.92
11313714--11313808	29	3.2	29	84	4	118	31	1	27	40	1.63
11313674--11313805	30	4.4	30	80	5	126	37	0	24	37	1.61
11317786--11317847	19	3.3	19	95	4	108	35	19	25	19	1.95
11317837--11317946	41	2.7	41	84	6	152	39	18	21	20	1.93
11319665--11319807	41	3.5	41	83	4	164	36	13	25	24	1.92
11322752--11322830	22	3.7	22	80	8	83	40	2	0	56	1.12
11322775--11322834	16	3.7	16	84	6	68	36	1	0	61	1.06
11322775--11322832	4	14.0	4	80	7	53	34	1	0	63	1.04
11322848--11322883	8	4.5	8	92	0	63	36	0	2	61	1.11
11322792--11323077	56	5.6	54	74	19	263	45	6	1	46	1.40
11322909--11323004	42	2.3	41	90	3	147	45	7	2	44	1.43
11322856--11323102	98	2.5	98	98	0	476	45	7	2	44	1.45
11323007--11323233	42	5.3	41	76	10	206	46	7	2	42	1.47
11323071--11323128	26	2.2	26	93	0	98	51	10	1	36	1.46
11322973--11323233	131	2.0	129	89	6	399	46	8	2	42	1.47
11323030--11323194	90	1.8	89	87	3	242	47	7	2	42	1.45
11323134--11323210	8	9.5	8	73	8	57	40	5	3	50	1.43
11323097--11323294	105	1.9	106	89	1	308	45	8	1	43	1.43
11323236--11323274	8	4.9	8	83	0	51	38	2	0	58	1.12
11323142--11323255	41	2.8	39	89	6	149	43	7	2	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11323183--11323367	64	2.8	64	85	4	226	45	6	1	46	1.36
11323186--11323274	16	5.6	16	68	10	56	41	6	1	50	1.36
11323292--11323330	18	2.2	18	86	9	53	41	2	0	56	1.13
11341181--11341264	42	2.0	42	83	4	107	35	0	19	45	1.50
11341205--11341341	58	2.4	58	93	2	231	33	0	18	47	1.49
11341555--11341580	9	2.9	9	100	0	52	42	23	11	23	1.86
11351948--11352023	21	3.6	21	82	3	82	30	13	27	28	1.94
11352339--11352410	30	2.4	30	86	4	101	22	29	19	29	1.98
11354039--11354091	27	2.0	27	88	0	79	28	16	1	52	1.54
11357692--11357725	17	2.0	17	94	0	59	35	20	8	35	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132