genome.fa.s12.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  84  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24998053--24998119	17	3.9	17	84	5	91	47	10	22	19	1.79
24998054--24998119	6	11.7	6	72	16	52	46	10	22	19	1.80
24998052--24998119	34	2.0	34	88	5	102	48	10	22	19	1.78
24999257--24999303	21	2.2	21	84	0	58	10	14	31	42	1.80
24999272--24999312	21	2.0	21	90	0	64	9	12	31	46	1.74
25001726--25001832	26	4.1	26	74	9	92	31	22	19	26	1.98
25005067--25005101	11	3.3	11	96	4	63	20	0	25	54	1.45
25005703--25006136	3	144.7	3	83	0	499	61	7	1	29	1.31
25012511--25012538	14	2.0	14	100	0	56	50	0	7	42	1.30
25012511--25012553	14	3.0	15	86	6	54	44	2	4	48	1.36
25016491--25016607	34	3.4	34	86	1	162	45	14	8	31	1.75
25022098--25022158	29	2.1	29	84	0	77	50	1	6	40	1.38
25022261--25022317	17	3.4	17	76	9	55	56	1	8	33	1.41
25028082--25028159	38	2.1	38	95	0	138	46	28	8	16	1.77
25042724--25042772	24	2.1	23	88	3	71	4	24	8	63	1.40
25079881--25079918	17	2.2	18	85	4	51	10	34	2	52	1.50
25080411--25080445	14	2.4	15	90	4	54	48	31	5	14	1.67
25080488--25080558	13	5.3	14	80	8	76	16	19	23	39	1.92
25080488--25080558	7	10.6	7	75	13	69	16	19	23	39	1.92
25080492--25080560	20	3.5	20	87	0	102	15	18	23	42	1.89
25081620--25081664	3	14.7	3	86	4	63	33	2	0	64	1.06
25089594--25089624	12	2.6	12	94	0	53	45	0	41	12	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25090057--25090095	17	2.4	17	87	12	55	15	17	15	51	1.77
25090674--25090713	20	2.0	20	85	9	55	77	0	20	2	0.88
25092212--25092240	14	2.1	14	93	6	51	24	17	6	51	1.69
25095439--25095482	21	2.1	21	100	0	88	27	27	4	40	1.75
25095895--25095929	18	1.9	18	88	0	52	40	31	14	14	1.86
25101402--25101532	63	2.1	64	94	2	230	35	18	23	22	1.95
25102467--25102516	24	2.0	24	84	3	64	58	10	28	4	1.49
25123453--25123816	79	4.6	79	89	1	514	23	20	25	30	1.98
25128693--25128890	79	2.5	79	86	1	272	23	19	26	30	1.98
25130909--25130942	16	2.1	16	94	0	59	32	0	5	61	1.20
25146235--25146600	79	4.6	79	85	1	491	22	19	27	29	1.98
25155073--25155111	17	2.3	17	90	0	60	17	17	12	51	1.76
25162827--25162879	26	2.0	26	85	10	72	45	0	1	52	1.11
25164733--25164765	16	2.0	17	88	5	50	54	15	9	21	1.68
25167982--25168015	12	3.0	11	87	8	50	70	0	5	23	1.09
25169688--25169740	26	2.0	26	85	10	72	45	0	1	52	1.11
25181691--25181735	18	2.5	18	85	7	56	28	24	22	24	1.99
25187884--25187924	22	1.9	22	85	14	59	60	0	36	2	1.10
25217274--25217313	20	2.0	20	90	0	62	67	7	25	0	1.16
25218218--25218279	17	3.6	17	77	2	61	22	19	9	48	1.78
25218841--25218874	14	2.4	14	95	0	59	85	0	14	0	0.60
25219318--25219393	26	2.9	26	84	0	98	30	15	22	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25220169--25220211	22	2.0	22	90	0	68	20	32	18	27	1.96
25236207--25236376	25	6.8	25	82	2	180	47	21	15	15	1.82
25236208--25236376	75	2.3	75	88	3	243	47	20	15	15	1.82
25242297--25242558	25	10.5	25	79	5	235	45	23	15	15	1.84
25242298--25242558	75	3.5	73	78	6	267	45	23	15	15	1.84
25255938--25255962	13	1.9	13	100	0	50	32	16	0	52	1.44
25260059--25260088	14	2.2	14	94	5	53	30	23	10	36	1.87
25260100--25260127	14	2.0	14	100	0	56	35	14	14	35	1.86
25260101--25260135	14	2.5	14	90	0	52	37	17	8	37	1.80
25262956--25263293	51	6.6	51	90	0	489	34	15	21	28	1.95
25275682--25275736	24	2.3	24	100	0	110	32	0	32	34	1.58
25276529--25276574	24	1.9	24	90	0	74	52	6	17	23	1.68
25285914--25286031	56	2.1	56	98	0	227	43	16	6	33	1.74
25294250--25294283	12	2.9	11	87	12	50	73	0	14	11	1.10
25302570--25302628	24	2.5	24	83	10	68	37	3	0	59	1.14
25302593--25302757	58	2.8	59	81	7	194	41	1	2	53	1.24
25306190--25306227	18	2.1	19	85	5	51	21	26	23	28	1.99
25308423--25308934	258	2.0	257	97	0	970	32	22	14	30	1.94
25320740--25320873	31	4.5	31	73	9	120	47	8	16	27	1.75
25320734--25320873	59	2.4	58	83	4	192	49	7	15	27	1.72
25323281--25323423	56	2.6	56	83	0	187	32	20	23	23	1.98
25325301--25325363	17	3.6	17	72	4	54	38	17	22	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25335415--25335546	28	4.7	28	77	0	129	26	20	18	34	1.96
25335416--25335523	56	1.9	56	86	0	153	26	20	17	35	1.95
25338486--25338544	22	2.7	22	94	0	100	40	11	8	38	1.72
25342463--25342491	15	1.9	15	100	0	58	20	20	34	24	1.97
25352643--25352746	41	2.6	41	82	1	111	24	16	25	34	1.95
25355501--25355542	21	2.0	22	85	4	59	11	21	2	64	1.38
25360694--25360742	14	3.7	13	86	5	55	69	14	8	8	1.36
25360712--25360743	7	4.4	7	96	4	55	71	12	3	12	1.25
25364020--25364060	21	2.0	21	90	4	66	70	4	2	21	1.18
25382880--25383123	41	5.9	40	86	4	308	36	11	27	24	1.90
25382880--25383123	81	3.0	81	88	2	326	36	11	27	24	1.90
25382880--25383123	122	2.0	125	84	4	325	36	11	27	24	1.90
25400227--25400260	16	2.1	16	88	0	50	5	32	0	61	1.20
25411776--25411833	24	2.4	24	97	0	107	44	12	24	18	1.84
25420189--25420232	10	4.4	10	83	11	54	68	2	9	20	1.28
25437269--25437320	20	2.3	23	81	15	65	44	7	0	48	1.31
25441109--25441183	21	3.6	21	83	7	98	48	10	18	22	1.79
25442456--25442527	30	2.4	29	95	4	135	25	34	15	25	1.94
25445725--25446053	29	11.3	29	77	11	169	33	4	26	35	1.76
25445776--25446173	29	13.6	30	81	9	375	34	3	25	36	1.72
25446185--25446220	7	5.1	7	93	0	63	41	41	0	16	1.48
25447305--25447382	17	4.5	17	79	3	84	56	5	2	35	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25447903--25448110	86	2.4	86	88	0	308	25	24	16	34	1.96
25447695--25448319	295	2.1	295	87	0	892	22	24	17	34	1.96
25447990--25449008	209	4.9	209	93	0	1669	23	23	18	35	1.96
25457567--25457668	29	3.5	30	78	9	95	33	2	26	37	1.72
25457597--25457808	29	7.5	29	74	12	131	35	3	25	34	1.74
25457735--25457876	30	4.7	30	82	9	164	37	1	23	38	1.64
25457732--25457911	60	3.0	58	83	12	206	36	2	24	36	1.70
25457735--25457911	30	5.9	30	78	10	159	36	2	23	36	1.70
25461058--25461095	13	2.8	13	81	18	51	2	15	0	81	0.80
25461061--25461095	18	1.9	18	88	11	54	2	14	0	82	0.77
25461686--25461729	17	2.6	16	79	10	52	43	13	20	22	1.87
25469631--25469737	23	4.5	23	77	10	101	42	21	22	13	1.87
25473636--25473680	18	2.6	18	79	6	58	62	0	0	37	0.96
25474026--25474100	21	3.6	21	77	13	73	50	10	16	22	1.75
25476115--25476142	3	9.3	3	100	0	56	67	0	32	0	0.91
25477063--25477101	13	2.9	13	88	11	53	35	2	0	61	1.10
25477279--25477332	16	3.2	16	77	10	54	46	1	7	44	1.42
25483386--25483421	17	2.2	16	90	5	54	75	5	0	19	1.00
25483506--25483598	30	3.1	30	77	7	100	22	26	30	20	1.98
25486035--25486099	22	2.9	23	81	4	78	29	15	24	30	1.96
25486463--25486500	18	2.2	18	85	4	51	36	0	2	60	1.11
25487399--25487432	17	2.1	17	88	5	52	70	8	0	20	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25496383--25496421	17	2.3	17	86	8	53	5	20	0	74	1.01
25496654--25496737	41	2.0	41	97	0	159	35	14	15	34	1.88
25498625--25498656	12	2.4	14	90	10	50	59	0	21	18	1.38
25503871--25503907	18	2.1	18	89	0	56	29	24	18	27	1.98
25507906--25507954	21	2.3	21	92	0	80	28	12	20	38	1.89
25511298--25511336	21	1.9	19	90	10	60	71	2	0	25	0.98
25514062--25514209	28	5.3	28	79	8	149	38	22	16	22	1.93
25514081--25514209	55	2.3	56	85	1	170	37	24	15	22	1.93
25522106--25522163	21	2.8	21	82	10	66	17	13	25	43	1.86
25541580--25541617	19	2.0	19	94	0	67	42	39	0	18	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132