genome.fa.s12.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  66  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18470693--18471073	124	3.1	123	85	1	469	22	21	17	39	1.93
18475761--18476633	435	2.0	434	93	0	1478	27	20	22	29	1.98
18483543--18483667	48	2.6	48	91	1	189	24	24	15	36	1.93
18483705--18483811	48	2.2	49	88	1	153	23	20	13	42	1.87
18483920--18483973	21	2.6	20	75	18	56	25	25	7	40	1.82
18484040--18484395	49	7.3	48	71	6	216	19	24	18	37	1.94
18484107--18484366	99	2.7	98	80	4	256	18	25	18	38	1.93
18486063--18486225	82	2.0	84	92	2	276	9	20	9	60	1.55
18486232--18486269	18	2.1	18	90	9	60	0	15	0	84	0.63
18486063--18486260	82	2.4	81	85	9	256	8	21	8	62	1.50
18486231--18486269	15	2.6	14	88	11	60	0	17	0	82	0.68
18486231--18486276	16	3.0	16	84	9	60	0	21	0	78	0.76
18486235--18486278	18	2.4	18	82	14	54	0	20	0	79	0.73
18490975--18491113	30	4.6	30	86	1	172	39	2	20	36	1.68
18494001--18494032	15	2.0	17	88	11	50	37	0	0	62	0.95
18501384--18501421	18	2.2	18	86	13	53	57	0	0	42	0.98
18501778--18501832	22	2.6	21	80	5	65	49	12	14	23	1.78
18513528--18513618	2	45.5	2	100	0	182	0	50	0	49	1.00
18520980--18521270	43	6.8	43	87	3	342	29	23	9	37	1.86
18521767--18521805	19	2.1	19	100	0	78	35	5	20	38	1.75
18522496--18522598	40	2.8	35	73	13	107	33	24	19	23	1.97
18523577--18523611	7	5.1	7	89	3	54	31	25	0	42	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18530823--18530947	57	2.2	57	97	0	232	56	13	2	28	1.50
18532862--18532894	16	2.0	17	88	5	50	57	15	6	21	1.59
18545230--18545259	15	1.9	15	93	6	51	86	0	13	0	0.57
18545230--18545262	9	3.8	9	88	4	50	87	0	12	0	0.53
18549834--18549873	20	1.9	22	85	10	57	35	15	5	45	1.68
18550908--18550975	31	2.3	29	84	5	82	58	7	17	16	1.59
18550908--18550978	15	4.7	15	81	6	90	56	7	18	18	1.63
18552750--18552795	14	3.3	14	77	16	51	47	10	2	39	1.51
18554314--18554352	21	1.9	21	89	5	62	58	10	10	20	1.59
18557459--18557498	20	2.0	20	85	9	55	70	5	2	22	1.19
18575013--18575232	106	2.1	106	90	0	341	42	8	8	40	1.65
18575163--18575405	123	1.9	126	87	4	359	44	7	9	38	1.65
18579532--18579607	21	3.6	21	82	3	82	40	28	17	13	1.87
18579532--18579632	21	4.8	21	80	3	80	39	29	17	12	1.87
18600988--18601045	27	2.1	27	93	0	98	39	10	20	29	1.86
18603854--18603912	30	2.0	30	89	0	91	59	1	13	25	1.44
18605754--18605878	50	2.5	50	79	5	128	20	24	19	36	1.95
18605804--18606370	49	11.6	49	78	2	530	21	26	15	35	1.94
18605870--18606370	195	2.6	195	86	1	655	21	26	14	36	1.93
18605814--18606370	146	3.8	147	81	1	600	21	26	15	35	1.94
18619722--18619790	33	2.1	33	94	0	120	36	10	23	30	1.88
18626300--18626360	30	2.0	30	84	6	79	19	27	34	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18627452--18627493	20	2.2	20	86	4	59	28	0	2	69	1.01
18627793--18627818	11	2.4	11	100	0	52	76	7	0	15	0.99
18627826--18627925	7	14.4	7	83	13	75	16	5	3	76	1.09
18627861--18627925	21	3.2	21	84	4	89	13	6	1	78	1.01
18627826--18627927	6	16.0	6	89	4	105	16	4	2	75	1.10
18635285--18635523	40	6.0	40	79	2	248	28	18	26	25	1.98
18635290--18635525	80	3.0	80	84	1	294	28	19	26	26	1.98
18637971--18638083	43	2.6	43	95	1	199	30	7	19	42	1.80
18658696--18658751	16	3.3	18	72	20	50	35	0	1	62	1.06
18658757--18658813	24	2.4	25	77	14	66	50	0	3	45	1.18
18662522--18662575	21	2.6	21	78	0	54	33	25	22	18	1.97
18666034--18666077	14	2.8	16	80	16	56	52	0	0	47	1.00
18666113--18666163	27	1.9	27	92	4	86	5	15	3	74	1.16
18667528--18667592	29	2.2	29	81	5	78	52	23	13	10	1.72
18669538--18669757	79	2.8	78	94	1	368	30	27	20	22	1.98
18674236--18674932	138	5.1	138	92	1	1130	46	5	7	40	1.57
18674471--18674685	71	3.1	71	60	23	157	47	5	9	37	1.59
18674236--18674932	275	2.5	275	92	2	1139	46	5	7	40	1.57
18674908--18675056	80	1.9	80	94	0	262	30	13	8	46	1.73
18678687--18679121	41	10.6	41	81	3	509	25	23	12	38	1.89
18690307--18690331	3	8.3	3	100	0	50	0	32	0	68	0.90
18694758--18695012	41	6.2	41	87	1	323	25	25	9	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18695561--18695636	38	2.0	38	97	0	143	38	11	15	34	1.84
18695854--18695895	22	2.0	22	90	4	68	35	11	0	52	1.38
18703377--18703599	41	5.4	41	88	0	266	25	25	8	39	1.85
18721514--18721633	53	2.3	53	88	0	168	35	13	15	36	1.86
18728105--18728256	53	2.9	53	88	2	225	31	12	21	34	1.91
18736898--18736934	17	2.2	17	90	9	58	27	0	5	67	1.12
18739011--18739036	1	26.0	1	100	0	52	0	0	100	0	0.00
18743341--18743394	15	3.6	15	82	0	63	16	33	14	35	1.90
18743357--18743398	15	2.8	15	88	0	66	19	33	14	33	1.91
18743532--18743651	50	2.4	50	87	1	161	38	20	20	20	1.94
18745657--18745697	10	4.3	10	78	9	50	9	9	0	80	0.91
18746628--18746685	16	3.5	17	79	9	57	75	5	1	17	1.06
18746629--18746696	17	4.1	17	81	11	77	73	4	2	19	1.13
18747038--18747246	41	5.1	41	78	6	181	23	26	27	22	1.99
18747124--18747207	42	2.0	43	83	2	107	23	27	28	20	1.99
18747269--18747312	21	2.0	22	86	4	63	25	4	6	63	1.38
18747763--18747822	21	2.9	21	76	0	66	31	25	18	25	1.97
18748556--18748735	52	3.5	52	90	1	281	33	22	17	26	1.96
18752238--18752304	35	1.9	35	87	0	98	41	16	19	22	1.90
18765761--18765795	12	2.9	12	91	0	52	80	0	2	17	0.84
18765761--18765795	17	2.1	17	94	0	61	80	0	2	17	0.84
18776921--18776963	23	2.0	21	81	9	50	20	18	6	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18798618--18798652	18	1.9	18	88	0	52	51	8	34	5	1.56
18802752--18802803	21	2.5	21	78	6	52	28	13	25	32	1.93
18805079--18805117	16	2.3	17	86	8	53	48	12	7	30	1.69
18806377--18806425	13	3.8	13	79	17	50	48	12	0	38	1.41
18806377--18806425	25	2.0	25	87	0	71	48	12	0	38	1.41
18806419--18806467	25	1.9	25	84	12	64	38	0	6	55	1.25
18811615--18811764	77	1.9	77	91	0	246	26	20	28	25	1.99
18816745--18816788	13	3.5	13	79	17	56	47	11	0	40	1.39
18816740--18816788	25	2.0	25	87	0	71	51	10	0	38	1.36
18821683--18821708	7	3.7	7	100	0	52	42	11	15	30	1.82
18830537--18830669	57	2.3	57	81	0	149	30	11	15	42	1.82
18832437--18832575	20	6.9	20	79	6	120	15	30	23	31	1.95
18835371--18835423	21	2.6	19	80	16	61	30	15	22	32	1.94
18838677--18838748	29	2.5	29	93	0	117	18	26	5	50	1.68
18845069--18845140	28	2.5	28	86	4	108	15	30	5	48	1.67
18846100--18846198	36	2.8	36	77	0	99	23	19	16	41	1.90
18846174--18846293	46	2.6	47	88	4	163	35	18	18	28	1.94
18855992--18856054	12	5.1	12	74	24	51	49	1	1	47	1.20
18855995--18856076	38	2.2	38	80	8	96	52	2	1	43	1.22
18856118--18856162	17	2.6	17	80	13	56	55	2	0	42	1.12
18858888--18858926	15	2.6	15	83	0	51	30	28	28	12	1.93
18863567--18863957	183	2.1	181	81	6	450	37	18	6	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18865954--18866003	24	2.1	25	88	7	77	14	8	0	78	0.97
18866673--18866706	3	11.7	3	87	6	52	64	0	2	32	1.08
18868393--18868426	14	2.4	14	90	0	50	8	17	20	52	1.71
18884230--18884269	17	2.6	15	88	11	55	30	0	5	65	1.14
18888026--18888113	28	3.1	28	77	9	83	27	11	21	39	1.87
18888062--18888281	28	7.9	28	71	11	101	22	15	23	38	1.92
18888107--18888284	56	3.2	56	82	0	221	19	15	25	38	1.92
18888261--18888317	28	2.0	28	86	6	80	24	10	26	38	1.88
18900973--18902589	547	3.0	547	99	0	3155	38	19	14	26	1.91
18905177--18905230	27	2.0	27	100	0	108	37	29	14	18	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132