genome.fa.s12.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  122  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37367780--37367804	12	2.1	12	100	0	50	16	0	0	84	0.63
37367785--37367825	12	3.0	14	80	13	50	29	0	0	70	0.87
37367778--37367841	27	2.4	28	76	10	71	32	0	0	67	0.91
37371225--37371267	20	2.2	20	83	4	52	48	2	2	46	1.27
37403380--37403414	10	3.5	10	96	0	61	65	0	25	8	1.21
37404840--37404879	17	2.3	18	83	12	57	42	2	0	55	1.13
37409296--37409330	18	2.0	17	88	5	52	48	8	0	42	1.33
37409878--37409910	13	2.4	14	95	5	59	84	0	12	3	0.72
37409878--37409910	7	4.9	7	85	7	50	84	0	12	3	0.72
37421255--37421321	6	11.2	6	71	17	50	40	0	2	56	1.14
37421255--37421312	16	3.6	16	78	15	66	37	0	3	58	1.15
37421245--37421324	27	3.0	27	78	7	90	42	0	3	53	1.18
37421774--37421824	27	2.0	25	88	7	75	49	21	1	27	1.60
37422127--37422169	20	2.2	20	83	8	52	55	2	2	39	1.25
37422219--37422245	6	4.5	6	100	0	54	14	37	48	0	1.45
37422865--37423178	162	1.9	162	84	5	420	25	15	12	46	1.81
37422895--37423240	162	2.1	161	79	7	362	23	17	13	45	1.83
37423260--37423389	30	4.4	30	91	0	190	35	25	4	34	1.77
37423334--37423425	30	3.1	29	81	9	80	39	28	4	28	1.76
37423272--37423411	60	2.3	60	86	6	178	36	27	4	32	1.76
37423393--37423884	59	8.4	59	88	1	684	31	28	5	34	1.80
37436070--37436155	40	2.2	39	82	2	109	29	22	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37436112--37436691	68	8.5	68	96	0	1034	33	18	20	27	1.96
37436112--37436788	137	4.8	137	93	3	1079	33	18	20	27	1.96
37436112--37436691	205	2.8	205	97	0	1106	33	18	20	27	1.96
37436611--37436776	85	2.0	85	97	0	314	35	15	22	27	1.93
37436742--37436963	31	6.2	39	70	20	124	32	21	19	26	1.97
37436784--37437430	68	9.5	68	96	0	1141	34	18	19	27	1.96
37436784--37437430	137	4.7	136	96	0	1150	34	18	19	27	1.96
37436784--37437430	205	3.2	205	96	0	1188	34	18	19	27	1.96
37437696--37437738	17	2.6	17	81	3	52	34	0	4	60	1.17
37437686--37437747	12	5.5	11	75	9	54	38	0	4	56	1.21
37438185--37438235	27	2.0	25	88	7	75	49	21	1	27	1.60
37438538--37438580	20	2.2	20	83	8	52	55	2	2	39	1.25
37438630--37438656	6	4.5	6	100	0	54	14	37	48	0	1.45
37439274--37439587	162	1.9	162	85	5	429	25	15	12	46	1.81
37439304--37439649	162	2.1	161	79	7	371	23	16	13	45	1.83
37439669--37439828	30	5.4	30	85	6	184	35	25	3	35	1.74
37439831--37439934	30	3.5	29	69	10	84	30	25	6	36	1.82
37439802--37439996	59	3.3	58	87	4	259	31	27	5	35	1.79
37439861--37439961	29	3.5	29	73	9	98	30	25	4	38	1.77
37439830--37439998	29	5.8	27	67	16	88	30	28	5	35	1.81
37441425--37441459	16	2.2	16	94	0	61	20	0	22	57	1.41
37441686--37441755	29	2.4	30	73	7	72	27	12	4	55	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37445859--37445892	16	2.2	16	89	5	52	44	2	5	47	1.42
37446437--37446534	33	3.1	30	81	8	88	43	2	2	52	1.24
37450697--37450742	11	4.2	11	85	0	65	69	6	2	21	1.22
37451169--37451227	28	2.1	29	81	9	68	44	8	8	38	1.65
37465636--37465670	17	2.1	17	89	5	54	42	0	11	45	1.40
37476132--37476175	23	1.9	23	86	9	63	59	6	11	22	1.55
37476341--37476566	112	2.0	112	97	0	425	26	17	12	42	1.86
37477164--37477229	27	2.4	27	85	5	89	19	27	30	22	1.98
37480157--37480204	23	2.0	23	88	4	69	72	4	8	14	1.23
37481020--37481062	19	2.3	19	84	8	52	58	4	0	37	1.19
37483120--37483177	28	2.1	28	83	6	73	32	0	15	51	1.44
37483169--37483218	26	1.9	26	88	8	75	32	0	10	58	1.31
37486097--37486130	17	2.0	17	94	0	59	52	2	0	44	1.16
37486871--37486913	14	2.9	14	80	10	50	37	2	0	60	1.10
37490835--37490864	15	2.0	15	93	0	51	43	0	10	46	1.37
37492952--37493008	28	2.2	25	81	12	62	36	15	1	45	1.57
37508843--37508903	29	2.1	29	84	3	79	22	4	11	60	1.50
37508983--37509020	17	2.3	17	86	4	51	73	0	2	23	0.95
37515702--37515759	26	2.2	26	81	6	64	67	0	0	32	0.91
37526522--37526552	2	15.5	2	100	0	62	48	0	0	51	1.00
37529741--37529771	15	2.0	16	93	6	55	61	12	0	25	1.32
37537176--37537207	3	10.7	3	100	0	64	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37537640--37537664	13	1.9	13	100	0	50	24	4	0	72	1.02
37537847--37537882	13	2.5	15	91	8	58	33	0	0	66	0.92
37537847--37537894	15	3.3	15	86	11	57	35	2	0	62	1.07
37538306--37538334	10	2.9	10	100	0	58	0	51	6	41	1.28
37541723--37541768	24	1.9	23	86	8	65	54	6	4	34	1.46
37545794--37545833	21	1.9	21	85	10	55	30	15	20	35	1.93
37553192--37553289	49	2.0	49	100	0	196	38	28	18	14	1.90
37566611--37566636	7	3.7	7	100	0	52	53	0	0	46	1.00
37575069--37575115	17	2.7	18	78	12	53	68	4	4	23	1.26
37575080--37575115	19	1.9	18	88	5	54	69	5	2	22	1.22
37576101--37576126	13	2.0	13	100	0	52	46	0	0	53	1.00
37576343--37576431	23	3.7	23	72	11	72	42	16	11	29	1.83
37576400--37576442	13	3.4	13	77	6	52	41	16	9	32	1.80
37576880--37576933	28	2.0	27	88	3	81	59	7	12	20	1.58
37582463--37582520	31	1.9	30	86	6	82	43	8	10	37	1.70
37583655--37583693	16	2.4	17	86	4	53	46	12	0	41	1.42
37585866--37586058	51	3.8	51	90	0	296	33	13	23	30	1.93
37589901--37589947	25	1.9	24	82	4	58	38	4	4	53	1.40
37591584--37591621	20	1.9	19	89	5	58	57	5	5	31	1.43
37595299--37595339	16	2.6	16	75	24	50	36	0	0	63	0.95
37595329--37595389	30	2.0	31	81	6	72	40	0	8	50	1.32
37597000--37597033	13	2.6	13	90	0	50	35	0	8	55	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37604482--37604689	69	3.0	68	84	6	278	23	28	12	35	1.91
37621300--37621340	19	2.0	21	86	9	59	19	2	26	51	1.59
37634160--37634199	19	2.1	19	86	9	55	70	2	2	25	1.13
37646991--37647080	34	2.9	31	73	20	89	45	1	0	53	1.07
37648298--37649186	77	11.2	77	81	9	977	29	17	16	37	1.91
37648582--37648609	14	2.0	14	100	0	56	14	28	14	42	1.84
37648803--37649186	76	5.0	77	91	5	625	28	17	16	37	1.91
37649131--37649242	56	2.0	56	96	0	206	25	19	17	37	1.94
37649280--37649307	14	2.0	14	100	0	56	14	28	14	42	1.84
37649294--37649604	77	4.2	77	86	9	448	27	18	15	37	1.91
37649336--37649604	142	1.9	142	96	0	493	28	18	15	37	1.91
37650543--37650800	29	8.9	30	73	13	93	30	6	26	36	1.82
37650550--37650800	58	4.3	57	79	10	215	30	6	25	37	1.81
37650604--37650800	29	6.8	29	80	9	152	30	6	26	36	1.81
37650601--37650800	87	2.3	85	83	7	233	30	6	26	37	1.80
37651889--37651940	9	5.8	9	77	22	56	42	0	1	55	1.10
37651892--37651940	15	3.5	15	73	21	52	42	0	2	55	1.11
37651889--37651940	27	1.9	27	92	7	88	42	0	1	55	1.10
37652793--37652837	17	2.6	18	82	13	58	55	6	0	37	1.26
37654109--37654167	24	2.6	22	82	15	68	57	0	0	42	0.98
37663066--37663098	7	4.7	7	85	14	50	84	0	15	0	0.61
37663066--37663097	13	2.4	14	94	5	57	84	0	15	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37675840--37675877	18	2.2	18	90	9	62	36	0	0	63	0.95
37675871--37675939	20	3.3	20	72	11	59	37	1	5	55	1.33
37675889--37675944	11	5.3	11	77	12	55	44	1	5	48	1.36
37678906--37678935	12	2.6	11	90	10	51	26	0	0	73	0.84
37682781--37682946	58	2.9	58	83	8	205	43	1	1	53	1.19
37683026--37683119	46	2.1	44	84	11	120	37	26	4	31	1.76
37683101--37683152	16	3.2	16	86	0	68	28	26	3	40	1.74
37694513--37694563	3	17.0	3	83	0	57	37	3	1	56	1.29
37696662--37696736	29	2.6	28	83	8	96	48	8	10	33	1.67
37699434--37699480	24	2.0	24	84	8	62	38	0	2	59	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132