genome.fa.s12.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  44  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11921836--11922846	204	4.9	204	89	2	1422	35	18	23	22	1.96
11924977--11925169	29	6.6	28	78	9	147	38	25	4	31	1.76
11925016--11925169	58	2.7	58	83	10	190	38	27	3	31	1.73
11925037--11925169	59	2.3	58	89	3	196	39	27	2	30	1.69
11952700--11952762	24	2.6	24	84	0	90	49	11	14	25	1.76
11969380--11969424	18	2.3	18	85	14	54	60	26	2	11	1.42
11990027--11990071	18	2.3	18	85	14	54	60	26	2	11	1.42
12008672--12009065	29	13.6	29	70	18	205	34	3	28	33	1.75
12008692--12009054	59	6.2	58	79	8	348	34	3	28	33	1.73
12011411--12011529	47	2.5	48	82	6	134	23	26	15	34	1.94
12016455--12016527	29	2.5	31	80	13	91	34	4	23	38	1.74
12016455--12016863	59	7.1	58	79	9	367	35	2	27	33	1.72
12016455--12016848	117	3.4	118	80	8	427	35	2	27	34	1.72
12016822--12016902	30	2.8	30	80	12	82	35	4	19	39	1.74
12016543--12016892	117	3.0	116	76	8	275	36	2	27	34	1.71
12017970--12018043	3	24.7	3	84	0	85	35	2	4	58	1.31
12018202--12018269	29	2.4	28	87	7	93	55	1	1	41	1.18
12018224--12018263	17	2.4	17	87	8	55	57	2	0	40	1.12
12018218--12018249	11	2.8	12	95	4	57	59	0	0	40	0.97
12019224--12019566	173	2.0	172	88	1	517	30	16	15	37	1.90
12027380--12027451	20	3.5	20	69	16	67	31	8	12	47	1.71
12035072--12035127	6	9.7	6	76	7	62	39	0	3	57	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12035072--12035127	17	3.2	17	84	2	76	39	0	3	57	1.16
12035072--12035137	12	5.7	11	79	12	53	37	1	3	57	1.23
12036879--12037047	30	5.8	29	72	15	125	34	26	6	32	1.82
12036885--12037052	59	2.9	58	81	11	200	33	26	6	32	1.82
12037186--12037245	29	2.1	29	87	6	86	31	30	11	26	1.92
12062417--12062478	23	2.7	23	92	0	97	50	12	16	20	1.78
12062418--12062502	23	3.7	23	87	0	80	48	11	18	21	1.80
12069146--12069223	39	2.0	40	89	2	122	30	19	20	29	1.97
12071113--12071150	13	2.9	13	96	0	67	26	13	13	47	1.79
12074105--12074184	39	2.0	40	90	2	126	31	16	21	31	1.95
12088111--12088193	29	2.8	29	83	1	94	36	1	26	36	1.65
12090079--12090106	12	2.3	12	100	0	56	53	7	0	39	1.28
12094294--12094363	6	12.2	6	69	19	51	42	1	1	54	1.18
12094312--12094343	11	2.8	12	95	4	57	40	0	0	59	0.97
12094294--12094337	17	2.6	18	85	10	65	38	0	2	59	1.10
12094294--12094363	17	4.4	17	76	22	62	42	1	1	54	1.18
12094292--12094360	29	2.4	28	88	7	95	42	1	1	55	1.18
12095682--12095741	30	2.0	31	86	3	86	38	28	1	31	1.67
12095707--12096196	29	16.7	28	70	19	211	33	27	3	34	1.75
12095708--12096196	59	8.3	59	79	10	425	33	28	3	34	1.75
12095773--12096201	118	3.7	116	82	8	480	32	28	3	34	1.76
12100134--12100195	23	2.7	23	92	0	88	24	17	11	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12104835--12104914	30	2.7	30	86	1	99	38	26	3	31	1.74
12104831--12105265	29	14.9	29	69	13	177	35	27	2	34	1.72
12104831--12105296	59	8.0	58	77	9	364	34	27	3	34	1.74
12104929--12105296	118	3.1	117	82	5	447	34	27	3	35	1.74
12104929--12105316	29	13.2	29	69	19	166	34	27	4	34	1.76
12116378--12116507	29	4.4	30	70	7	88	36	5	22	36	1.77
12118157--12118212	6	9.7	6	78	7	62	57	3	0	39	1.16
12118153--12118213	29	2.1	28	90	3	95	60	3	0	36	1.13
12118143--12118208	17	3.8	16	82	11	69	56	3	1	39	1.24
12118157--12118212	17	3.2	17	84	2	76	57	3	0	39	1.16
12121818--12121859	21	2.0	21	100	0	84	42	4	14	38	1.66
12122796--12122827	11	2.8	12	95	4	57	40	0	0	59	0.97
12122778--12122821	17	2.6	18	85	10	65	38	0	2	59	1.10
12122806--12122848	17	2.5	17	84	3	50	44	2	0	53	1.13
12122776--12122843	29	2.4	28	87	7	93	41	1	1	55	1.18
12124036--12124101	30	2.2	29	86	2	87	39	21	4	34	1.74
12124127--12124601	59	8.3	58	76	11	371	33	27	3	35	1.74
12124116--12124278	29	5.6	29	69	15	95	33	28	5	32	1.80
12124244--12124344	49	2.1	49	88	3	150	34	27	4	32	1.78
12124322--12124537	30	7.5	29	69	20	100	34	26	1	37	1.67
12124290--12124538	29	8.6	28	70	18	138	34	27	2	36	1.70
12124127--12124460	167	2.0	166	84	4	440	33	27	4	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12124489--12124536	25	1.9	25	87	8	71	37	27	0	35	1.57
12128531--12128592	23	2.7	23	94	0	106	22	17	12	46	1.82
12137440--12137485	18	2.6	18	82	0	65	41	0	2	56	1.11
12139427--12139830	30	13.8	30	69	14	141	36	26	3	33	1.74
12139521--12139835	29	10.8	28	67	18	101	34	27	3	34	1.73
12139521--12139835	59	5.4	57	80	6	269	34	27	3	34	1.73
12139523--12139826	118	2.6	116	79	9	330	35	26	3	33	1.73
12162331--12162365	6	6.0	6	86	6	54	88	0	0	11	0.51
12162335--12162365	11	2.7	11	95	5	53	90	0	0	9	0.46
12175446--12175492	24	2.0	24	95	0	85	25	14	6	53	1.65
12175446--12175507	24	2.6	24	86	0	70	29	14	8	48	1.72
12205203--12205393	29	6.7	29	69	19	123	35	28	2	34	1.69
12205281--12205328	26	1.9	24	83	8	60	37	29	0	33	1.58
12209142--12209203	23	2.7	23	92	5	99	22	19	12	45	1.84
12214961--12215623	209	3.2	208	86	2	871	36	17	22	22	1.94
12215553--12215721	49	3.5	49	89	2	234	33	14	26	25	1.95
12216037--12216084	6	8.0	6	85	0	60	41	0	0	58	0.98
12218013--12218069	29	2.0	29	85	0	78	40	24	5	29	1.77
12218097--12218542	59	7.6	59	79	6	451	35	27	2	33	1.71
12218098--12218580	117	4.1	118	81	4	528	35	27	3	34	1.73
12218121--12218581	29	15.7	29	67	17	202	34	27	3	34	1.73
12218097--12218580	176	2.8	174	80	7	532	35	27	3	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12231658--12232320	209	3.2	208	86	2	871	36	17	22	22	1.94
12232250--12232418	49	3.5	49	89	2	234	33	14	26	25	1.95
12232734--12232781	6	8.0	6	85	0	60	41	0	0	58	0.98
12234710--12234766	29	2.0	29	85	0	78	40	24	5	29	1.77
12234794--12235239	59	7.6	59	79	6	451	35	27	2	33	1.71
12234795--12235277	117	4.1	118	81	4	528	35	27	3	34	1.73
12234818--12235278	29	15.7	29	67	17	202	34	27	3	34	1.73
12234794--12235277	176	2.8	174	80	7	532	35	27	3	34	1.73
12240099--12240617	258	2.0	258	93	0	876	30	20	15	32	1.94
12275326--12275391	29	2.3	29	81	5	80	27	9	28	34	1.87
12275344--12275400	30	1.9	29	82	3	69	31	7	29	31	1.84
12275353--12275509	59	2.7	59	78	7	167	33	7	27	31	1.84
12275344--12275448	29	3.6	29	74	14	90	34	8	25	31	1.86
12275345--12275569	58	3.9	56	78	10	177	33	5	27	33	1.81
12275439--12275603	29	5.8	29	77	9	142	31	3	27	37	1.74
12275439--12275628	29	6.6	28	76	8	134	32	5	24	37	1.78
12277282--12277327	23	2.0	24	86	4	67	54	4	2	39	1.32
12277299--12277342	17	2.6	18	86	13	67	59	4	0	36	1.18
12278067--12278356	134	2.2	133	95	0	517	25	26	15	32	1.96
12278200--12278628	201	2.2	194	87	2	615	23	24	18	33	1.97
12278985--12279125	49	2.9	48	72	8	131	14	25	19	39	1.90
12285139--12285200	29	2.1	29	82	11	74	29	9	24	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12285042--12285408	199	1.8	200	98	0	718	42	7	20	28	1.80
12285467--12285550	29	2.9	29	77	8	73	35	5	23	34	1.80
12287445--12287478	11	3.0	11	87	8	50	58	2	0	38	1.13
12287439--12287477	6	6.7	6	82	5	53	56	2	0	41	1.13
12287432--12287466	18	2.0	18	88	5	54	54	2	0	42	1.15
12288564--12288633	6	12.2	6	69	19	51	42	1	1	54	1.18
12288582--12288613	11	2.8	12	95	4	57	40	0	0	59	0.97
12288564--12288607	17	2.6	18	85	10	65	38	0	2	59	1.10
12288564--12288633	17	4.4	17	76	22	62	42	1	1	54	1.18
12288562--12288630	29	2.4	28	88	7	95	42	1	1	55	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132