genome.fa.s12.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  126  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38909084--38909121	17	2.2	17	86	9	51	42	0	0	57	0.98
38911954--38912031	38	2.1	38	95	0	138	32	12	11	43	1.79
38914644--38914708	32	2.0	32	93	0	112	23	16	10	49	1.77
38916302--38916329	3	9.3	3	100	0	56	67	0	0	32	0.91
38920893--38920931	21	1.9	20	89	5	60	25	0	0	74	0.82
38920897--38921082	67	2.8	66	84	10	234	43	0	2	53	1.19
38926114--38926167	6	9.0	6	80	15	67	81	0	18	0	0.69
38926092--38926167	16	4.7	15	76	11	71	81	0	14	3	0.83
38926114--38926167	20	2.6	20	85	5	72	81	0	18	0	0.69
38926114--38926163	14	3.6	14	80	15	59	82	0	18	0	0.68
38927089--38927252	50	3.3	50	79	6	172	37	17	21	23	1.93
38927438--38927563	44	3.0	42	72	18	125	31	21	20	26	1.98
38927318--38927607	80	3.6	80	90	4	454	32	23	18	25	1.97
38929241--38929362	23	5.4	22	82	4	127	11	22	23	41	1.86
38929241--38929359	45	2.6	46	79	9	138	11	23	24	40	1.88
38930210--38930902	80	8.7	80	92	0	1131	32	22	18	26	1.97
38930891--38931025	50	2.7	50	91	0	216	41	17	17	23	1.90
38931485--38931638	67	2.4	64	89	8	231	39	0	2	57	1.17
38931487--38931655	67	2.6	66	85	7	202	43	1	2	52	1.21
38933847--38933882	18	1.9	19	94	5	65	61	8	0	30	1.26
38934218--38934256	15	2.6	15	95	0	69	61	0	15	23	1.33
38936756--38936802	22	2.1	23	84	7	62	27	12	8	51	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38953023--38953090	27	2.8	23	71	16	64	10	7	14	67	1.40
38953037--38953134	27	3.6	26	69	16	81	9	6	17	67	1.39
38953023--38953092	24	2.8	24	80	4	77	10	7	15	67	1.41
38953174--38953217	11	4.1	11	88	5	54	29	4	2	63	1.26
38953173--38953215	21	2.0	21	86	0	59	27	4	2	65	1.25
38974775--38974865	46	2.0	45	84	2	119	57	12	4	26	1.54
38997485--38997659	90	2.0	85	93	5	296	21	21	17	40	1.92
39003219--39003244	13	2.0	13	100	0	52	53	0	0	46	1.00
39003813--39003867	24	2.2	24	75	9	58	45	18	10	25	1.82
39003891--39003969	39	2.0	39	100	0	158	44	15	10	30	1.79
39007838--39007904	33	2.0	33	88	5	100	38	11	14	34	1.84
39015346--39015393	21	2.3	21	89	3	71	68	2	10	18	1.28
39028749--39028794	21	2.1	22	88	11	69	52	26	0	21	1.47
39031901--39031948	21	2.3	21	89	3	71	18	10	2	68	1.28
39034041--39034190	76	2.0	76	97	0	282	30	12	28	30	1.92
39051162--39051195	13	2.6	13	90	9	52	41	2	5	50	1.42
39051362--39051463	32	3.2	32	84	5	127	46	11	3	38	1.59
39051362--39051482	32	3.8	31	78	12	122	46	9	3	40	1.54
39063343--39063368	12	2.2	12	100	0	52	92	0	7	0	0.39
39064208--39064253	19	2.3	21	82	17	62	36	0	8	54	1.32
39072430--39072690	133	2.0	134	87	2	382	32	14	14	37	1.88
39083364--39083388	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39085137--39085171	19	1.9	19	88	11	56	40	25	0	34	1.56
39094378--39094442	30	2.1	30	83	11	78	35	7	4	52	1.51
39098398--39098432	19	1.9	19	88	11	56	40	25	0	34	1.56
39099794--39099863	18	3.7	19	78	12	74	58	5	0	35	1.22
39100801--39100836	15	2.5	14	86	8	54	63	2	0	33	1.08
39104232--39104316	31	2.7	31	90	1	143	47	14	15	23	1.82
39104659--39104823	47	3.5	46	79	10	136	20	3	16	59	1.52
39104682--39104823	49	3.0	48	79	14	134	20	3	16	59	1.52
39104763--39104823	24	2.6	23	71	7	59	19	1	14	63	1.38
39110823--39110864	18	2.3	19	88	8	61	64	9	0	26	1.24
39110823--39110871	17	2.9	16	84	9	53	65	8	0	26	1.20
39110850--39110899	21	2.5	21	83	6	68	72	4	0	24	1.02
39110850--39110894	19	2.2	20	88	7	65	75	4	0	20	0.97
39112068--39112109	14	2.9	15	76	23	54	71	0	2	26	0.98
39112068--39112121	28	1.9	28	85	7	74	72	0	5	22	1.05
39120594--39120634	20	2.0	21	85	4	57	53	9	7	29	1.60
39121833--39121871	9	4.4	9	81	18	55	38	2	0	58	1.12
39121840--39121879	17	2.4	17	91	0	62	37	2	0	60	1.11
39123138--39123165	2	14.0	2	100	0	56	50	0	0	50	1.00
39124255--39124311	29	1.9	30	85	3	80	33	8	10	47	1.69
39124591--39124626	3	12.0	3	100	0	72	66	0	0	33	0.92
39127311--39127606	164	1.8	160	89	5	461	33	9	18	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39127476--39127738	132	2.0	132	87	1	384	33	11	16	38	1.84
39127318--39127897	296	2.0	292	87	3	851	33	10	18	37	1.85
39127606--39127938	164	2.0	164	85	2	445	34	11	17	36	1.86
39128026--39128086	31	2.0	31	87	6	88	63	4	1	29	1.24
39131974--39132034	20	2.9	21	81	18	58	62	0	0	37	0.96
39132845--39133125	149	1.9	149	81	0	337	32	9	21	36	1.85
39134192--39134261	24	2.9	24	78	0	77	47	0	0	52	1.00
39136941--39137177	41	5.8	41	81	2	271	30	19	29	19	1.97
39136942--39137177	82	2.9	82	89	3	359	30	19	30	19	1.97
39138489--39138517	15	1.9	15	100	0	58	34	0	3	62	1.12
39139466--39139605	42	3.3	42	80	2	174	23	18	26	31	1.97
39141277--39141307	15	2.1	14	94	5	53	35	0	19	45	1.51
39143943--39144110	56	3.1	53	81	6	203	32	17	16	33	1.92
39144118--39144250	59	2.3	57	76	8	133	28	15	15	39	1.89
39144459--39144505	23	2.0	24	87	4	69	59	0	12	27	1.34
39145008--39145099	30	3.1	30	82	3	87	27	2	4	66	1.22
39145048--39145115	30	2.2	31	86	5	93	25	4	2	67	1.23
39145690--39145803	31	3.6	31	76	6	131	37	21	14	27	1.91
39145722--39145818	32	3.1	32	73	8	117	35	19	15	29	1.93
39145691--39145818	63	2.0	63	100	0	256	35	20	14	28	1.92
39145991--39146185	59	3.3	59	78	8	175	44	15	15	24	1.85
39147896--39147920	11	2.3	11	100	0	50	48	0	8	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39151551--39151581	15	2.1	15	93	0	53	51	19	9	19	1.74
39155013--39155073	28	2.2	27	94	2	104	24	0	24	50	1.49
39155957--39155990	11	3.0	11	86	4	50	52	0	2	44	1.16
39160964--39161007	3	14.7	3	95	0	79	63	2	34	0	1.07
39161042--39161078	7	5.3	7	96	0	56	32	0	13	54	1.40
39161915--39161985	31	2.3	31	83	11	85	21	11	19	47	1.80
39166460--39166492	17	1.9	17	93	0	57	63	3	0	33	1.10
39175993--39176055	27	2.3	27	89	5	101	20	34	15	28	1.94
39179681--39179804	53	2.3	53	86	2	169	31	13	8	45	1.74
39181931--39181987	30	1.9	30	92	7	98	33	24	21	21	1.97
39182594--39182625	2	16.0	2	100	0	64	0	50	0	50	1.00
39197552--39197608	28	2.0	28	100	0	114	26	17	21	35	1.95
39203377--39203460	42	2.0	42	86	4	116	46	21	0	32	1.52
39205481--39205523	15	2.5	18	85	14	56	55	2	0	41	1.12
39205481--39205533	19	3.2	16	78	17	54	52	3	0	43	1.19
39208321--39208363	19	2.3	19	84	8	52	48	2	6	41	1.43
39210878--39210902	9	2.8	9	100	0	50	12	0	0	88	0.53
39212553--39212615	24	2.6	25	80	12	69	55	0	14	30	1.39
39215035--39215068	18	1.9	17	88	5	50	26	11	14	47	1.79
39218537--39218569	16	2.1	16	94	0	57	60	12	0	27	1.32
39224192--39224234	18	2.4	18	88	7	61	53	0	0	46	1.00
39226684--39226743	31	2.0	30	93	3	102	43	11	11	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39228285--39228352	29	2.4	28	85	7	84	41	2	5	50	1.42
39231187--39231228	21	2.0	21	86	9	59	38	0	2	59	1.10
39232978--39233054	9	8.3	10	72	20	53	37	2	0	59	1.11
39232968--39233025	21	2.8	21	76	5	64	39	5	0	55	1.22
39233334--39233382	24	2.0	24	88	7	73	22	30	0	46	1.52
39238609--39238780	29	5.8	29	78	6	148	33	1	25	39	1.64
39238608--39238810	89	2.3	89	80	4	223	34	0	24	40	1.62
39240514--39240626	39	2.8	40	93	2	192	26	22	26	24	2.00
39243160--39243194	17	1.9	19	88	11	56	34	0	25	40	1.56
39245350--39245407	28	2.0	27	83	9	71	34	12	1	51	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132