genome.fa.s12.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  104  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31750464--31750506	6	7.0	6	84	5	59	18	13	46	20	1.83
31756661--31756728	26	2.6	27	77	13	70	66	4	23	5	1.32
31756664--31756728	25	2.6	24	76	9	76	67	4	21	6	1.31
31773068--31773174	52	2.1	52	100	0	214	44	21	5	28	1.74
31776814--31776939	58	2.2	58	98	0	243	44	14	19	21	1.86
31778027--31778072	24	2.0	22	83	8	56	28	2	2	67	1.14
31779228--31779272	18	2.5	18	92	0	72	51	17	4	26	1.65
31783394--31783424	6	5.2	6	100	0	62	64	0	19	16	1.29
31790435--31790469	16	2.2	16	94	0	61	45	0	0	54	0.99
31795526--31795772	29	8.3	30	78	10	215	36	1	25	37	1.66
31795714--31795784	30	2.3	30	78	7	72	36	1	25	36	1.65
31797988--31798624	39	16.4	39	75	11	438	23	18	32	25	1.97
31798025--31798505	194	2.5	192	83	4	599	23	18	33	24	1.97
31797967--31798624	117	5.6	117	79	5	659	23	18	32	25	1.97
31797990--31798526	155	3.5	153	77	11	373	22	18	33	25	1.97
31798106--31798624	271	1.9	269	80	7	602	23	18	32	25	1.97
31810667--31810870	30	6.9	29	73	13	137	36	3	25	34	1.75
31810628--31810870	59	4.1	57	73	13	177	37	3	24	34	1.72
31810650--31810871	29	7.4	30	70	15	122	37	3	24	34	1.73
31810627--31810871	30	8.2	29	70	15	135	37	3	24	34	1.72
31811616--31811656	21	1.9	21	85	5	55	14	4	4	75	1.14
31812093--31812158	24	2.8	23	68	22	57	21	10	15	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31815521--31815793	32	8.2	32	82	9	312	37	17	18	26	1.93
31815532--31815613	42	2.0	42	87	0	119	37	17	18	26	1.92
31815574--31815793	65	3.4	65	92	0	361	37	18	19	24	1.94
31815574--31815793	97	2.3	97	89	1	334	37	18	19	24	1.94
31815574--31815790	32	6.7	32	89	2	326	37	17	19	24	1.94
31823130--31823159	12	2.5	12	94	0	51	43	16	13	26	1.85
31825256--31825300	18	2.3	20	85	7	58	33	0	11	55	1.35
31826156--31826197	13	2.9	14	80	13	50	54	0	0	45	0.99
31826160--31826196	16	2.3	16	86	13	58	59	0	0	40	0.97
31826984--31827028	17	2.6	19	76	16	53	35	0	6	57	1.25
31828582--31828632	11	4.6	11	75	7	50	3	7	15	72	1.23
31838598--31838640	21	2.0	22	82	13	54	48	2	16	32	1.58
31840394--31840444	21	2.5	19	79	17	57	27	13	23	35	1.93
31844021--31844068	21	2.2	20	79	13	51	62	8	4	25	1.41
31844018--31844078	22	2.7	21	80	12	59	62	6	3	27	1.36
31844066--31844120	28	2.0	28	85	0	74	58	5	1	34	1.32
31844263--31844303	21	2.0	21	85	9	57	60	4	7	26	1.43
31844423--31844490	26	2.5	26	71	4	64	72	7	4	16	1.24
31844377--31844480	41	2.6	38	80	13	102	68	6	4	20	1.31
31844460--31844496	19	1.9	19	88	0	56	78	10	0	10	0.97
31844509--31844645	51	2.8	48	72	19	127	65	5	3	24	1.31
31844455--31844645	100	1.9	101	85	3	269	67	6	3	21	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31844575--31844644	13	5.5	13	76	19	60	70	7	0	22	1.12
31844560--31844644	25	3.3	25	76	15	68	69	5	1	23	1.17
31862370--31862395	13	2.0	13	100	0	52	15	0	38	46	1.46
31865710--31865791	39	2.1	39	95	0	146	62	7	6	24	1.44
31871225--31871359	30	4.7	29	75	9	116	36	20	2	41	1.64
31871221--31871417	59	3.4	58	73	10	143	36	19	3	41	1.67
31871336--31871483	30	5.0	29	75	8	118	35	20	4	38	1.74
31871323--31871488	30	5.6	29	71	13	97	34	21	4	38	1.75
31871323--31871497	60	2.9	59	80	5	167	35	21	5	37	1.76
31871569--31871610	18	2.3	18	88	8	59	11	14	2	71	1.24
31875639--31875681	18	2.4	18	80	7	52	51	0	0	48	1.00
31879475--31879530	18	3.1	18	78	14	62	60	0	1	37	1.07
31886928--31886971	23	1.9	23	86	9	63	68	20	4	6	1.31
31886927--31886977	23	2.2	23	79	6	59	66	17	9	5	1.40
31889260--31889363	23	4.5	23	90	1	154	45	19	8	26	1.79
31889244--31889363	46	2.6	47	85	6	156	44	19	8	28	1.79
31889466--31889501	12	3.0	12	83	0	54	44	19	16	19	1.87
31922340--31922858	50	10.6	49	70	10	249	37	18	24	18	1.93
31922339--31922857	97	5.3	98	77	9	468	37	18	24	18	1.93
31922404--31922858	49	9.3	50	73	9	316	38	18	23	19	1.93
31922463--31922872	149	2.8	147	79	4	454	38	18	23	19	1.93
31939292--31939356	30	2.2	30	91	0	103	58	12	3	26	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31940669--31940705	18	2.1	18	95	5	67	21	16	18	43	1.88
31942879--31942960	28	2.8	28	76	9	76	60	1	3	34	1.22
31946334--31946384	22	2.3	22	76	6	59	41	0	3	54	1.19
31949705--31949772	6	12.0	6	72	12	54	38	2	1	57	1.23
31949705--31949771	21	3.6	18	81	15	82	37	2	1	58	1.23
31949759--31949798	20	2.0	20	85	0	53	55	2	2	40	1.27
31950506--31950551	4	11.5	4	78	17	51	71	2	0	26	0.97
31950502--31950539	20	1.9	20	94	0	67	68	2	0	28	1.03
31951595--31951699	29	3.6	29	85	3	156	38	28	1	31	1.68
31951753--31951869	59	2.0	59	81	6	139	25	19	11	42	1.86
31952181--31952365	97	1.9	98	83	5	241	30	16	14	39	1.87
31957550--31957607	12	4.7	12	83	12	73	84	3	12	0	0.74
31957557--31957607	6	8.5	6	81	14	52	86	1	11	0	0.66
31957567--31957607	19	2.2	19	90	0	64	87	2	9	0	0.62
31958795--31958958	51	3.3	50	70	6	143	39	18	25	15	1.91
31958784--31959084	100	3.0	99	82	2	381	39	20	24	15	1.91
31959528--31959595	6	12.0	6	72	12	54	38	4	1	55	1.29
31959528--31959594	21	3.6	18	83	13	91	37	4	1	56	1.29
31961430--31961647	30	7.4	30	79	7	189	37	24	2	35	1.68
31961430--31961716	59	4.9	58	78	7	258	36	25	2	35	1.70
31961673--31961833	59	2.8	60	80	4	186	32	22	6	38	1.79
31974235--31974271	15	2.5	15	86	0	56	35	0	8	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31974318--31974386	22	2.9	23	76	10	68	50	0	1	47	1.09
31975338--31975371	18	1.9	17	94	5	59	41	2	0	55	1.15
31978031--31978064	18	1.9	18	88	5	52	29	0	5	64	1.17
31979052--31979111	30	2.0	30	86	0	84	31	0	6	61	1.22
31986034--31986077	21	2.1	21	83	8	54	63	6	13	15	1.49
31989888--31989937	16	3.2	16	69	8	50	36	0	40	24	1.55
31990230--31990266	18	2.0	20	89	10	60	48	0	8	43	1.32
31992242--31992285	17	2.5	18	85	10	56	43	2	2	52	1.26
31996011--31996040	2	15.0	2	100	0	60	50	0	0	50	1.00
31997520--31997544	2	12.5	2	100	0	50	52	0	0	48	1.00
31997664--31997706	19	2.3	19	95	0	77	48	11	6	32	1.66
31999273--31999353	41	2.0	41	95	0	144	35	16	22	25	1.94
32008882--32009037	78	2.0	78	96	0	285	39	8	17	34	1.81
32017434--32017460	3	9.0	3	100	0	54	66	0	0	33	0.92
32017935--32017977	20	2.1	20	83	12	52	32	2	20	44	1.65
32019929--32019970	2	21.5	2	95	4	77	52	0	0	47	1.00
32023706--32023833	62	2.1	62	93	0	220	47	9	9	33	1.68
32023902--32023950	23	2.2	22	79	10	55	38	2	28	30	1.68
32023917--32023962	23	2.0	23	91	0	74	43	0	26	30	1.55
32024126--32024191	31	2.1	32	83	10	84	19	21	27	31	1.97
32026832--32026871	17	2.3	17	82	4	53	35	32	2	30	1.71
32027034--32027068	18	2.0	18	88	5	54	34	2	14	48	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32036989--32037089	38	2.6	40	71	10	100	21	19	28	29	1.98
32043706--32043994	101	2.9	100	92	3	483	23	18	21	36	1.95
32049977--32050031	22	2.4	23	82	17	71	47	0	1	50	1.11
32054477--32054516	11	3.6	11	82	0	53	50	0	2	47	1.14
32054984--32055013	4	7.5	4	100	0	60	26	0	0	73	0.84
32058544--32058658	57	2.0	56	93	1	194	28	14	9	46	1.76
32059276--32059782	253	2.0	253	88	1	757	31	16	21	29	1.95
32064606--32064651	2	23.0	2	100	0	92	50	0	0	50	1.00
32065635--32065692	27	2.1	28	83	3	73	55	6	17	20	1.65
32066185--32066233	23	2.1	24	88	3	73	48	4	0	46	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132