genome.fa.s12.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  67  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18921189--18921271	28	3.0	28	81	0	85	31	14	20	33	1.93
18921263--18921519	28	9.2	28	77	5	214	20	15	24	39	1.91
18921263--18921528	56	4.7	56	83	2	273	20	15	23	39	1.91
18921217--18921481	112	2.4	112	84	3	320	22	16	24	36	1.94
18929715--18929810	51	1.9	49	85	4	129	37	13	13	35	1.84
18933885--18933941	3	19.0	3	100	0	114	66	0	0	33	0.92
18942110--18942275	81	2.1	80	95	1	296	15	19	21	43	1.88
18955667--18955733	34	2.0	34	96	0	125	38	22	5	32	1.78
18964480--18964779	52	5.8	51	88	3	408	32	23	13	30	1.93
18964431--18964771	104	3.3	103	84	5	417	33	24	13	28	1.93
18964480--18964779	154	1.9	155	89	4	462	32	23	13	30	1.93
18976573--18976611	17	2.4	17	87	12	55	15	17	15	51	1.77
18984657--18984955	52	5.8	52	89	0	411	31	25	13	29	1.94
19004039--19004086	26	1.9	25	84	16	64	16	8	6	68	1.35
19009671--19009714	20	2.2	20	87	4	61	15	13	2	68	1.31
19018647--19018678	14	2.1	16	88	11	50	62	0	37	0	0.95
19035914--19035959	18	2.6	18	86	6	58	30	30	21	17	1.96
19039640--19039664	11	2.3	11	100	0	50	8	16	0	76	1.02
19046506--19046542	17	2.2	17	90	0	56	18	18	8	54	1.68
19047129--19047165	18	2.0	20	89	10	60	78	0	18	2	0.87
19063009--19063054	24	2.0	23	86	4	65	47	8	15	28	1.74
19065634--19065684	14	3.6	15	75	22	56	0	29	1	68	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19065632--19065681	12	4.5	11	78	19	50	0	30	2	68	1.01
19076898--19076935	17	2.2	17	86	9	51	15	13	15	55	1.70
19089899--19089939	20	2.0	20	85	0	55	34	29	2	34	1.71
19092293--19092347	28	1.9	29	82	17	71	63	1	23	10	1.36
19092841--19092879	20	2.0	20	84	0	51	48	2	12	35	1.55
19099644--19099682	20	2.0	20	84	0	51	51	2	10	35	1.50
19115672--19115854	75	2.4	76	88	1	269	21	29	3	45	1.69
19116452--19116489	4	9.8	4	83	16	53	73	0	0	26	0.83
19116452--19116535	31	2.9	27	77	17	89	71	2	2	23	1.10
19118424--19118579	50	3.1	50	69	12	138	23	20	21	33	1.97
19118428--19119196	101	7.6	101	79	4	642	28	20	17	34	1.95
19118581--19118752	51	3.4	51	71	10	163	32	22	13	30	1.93
19118434--19119192	202	3.8	201	80	2	729	28	19	17	34	1.95
19118630--19118786	50	3.1	50	69	15	160	33	21	14	31	1.93
19118434--19119196	303	2.5	301	79	3	827	28	20	17	34	1.95
19118253--19119224	202	4.8	200	76	5	723	27	19	17	35	1.94
19124681--19124721	12	3.5	12	81	15	50	17	9	0	73	1.09
19136106--19136130	13	1.9	13	100	0	50	40	4	8	48	1.51
19139187--19139227	12	3.5	12	81	15	50	17	9	0	73	1.09
19142496--19142533	13	2.7	15	88	8	53	50	10	2	36	1.51
19165253--19165283	12	2.6	12	94	0	53	80	3	0	16	0.83
19165427--19165468	4	10.8	4	80	14	52	73	2	0	23	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19165427--19165505	31	2.7	30	84	11	101	68	6	3	21	1.28
19174051--19174088	17	2.2	17	86	9	51	26	2	0	71	1.00
19176011--19176074	13	4.9	13	81	7	76	37	20	6	35	1.78
19177090--19177483	41	9.4	41	71	11	235	25	25	26	21	2.00
19177092--19177500	82	4.9	82	73	14	271	25	25	26	22	2.00
19177215--19177314	52	1.9	52	85	0	137	24	25	31	20	1.98
19177173--19177354	93	1.9	94	83	7	237	25	27	28	18	1.98
19177133--19177378	134	1.8	134	83	5	327	25	28	27	18	1.98
19177369--19177500	42	3.2	40	78	11	142	25	21	26	25	2.00
19177593--19177657	26	2.6	25	90	7	96	29	49	4	16	1.66
19177593--19177669	25	3.0	25	78	14	77	25	46	6	20	1.75
19177684--19177802	44	2.7	44	83	3	125	14	46	10	28	1.78
19179619--19179659	20	2.0	22	85	9	59	63	0	0	36	0.95
19179666--19179958	8	34.3	9	64	26	83	47	0	4	47	1.23
19179640--19179740	48	2.1	49	80	9	118	49	0	2	46	1.23
19179692--19180108	31	13.2	30	67	15	180	48	0	5	46	1.27
19179722--19180105	49	7.9	49	92	3	634	48	0	5	45	1.27
19179722--19180105	146	2.6	145	93	2	637	48	0	5	45	1.27
19180059--19180114	18	3.2	17	75	12	51	51	0	1	46	1.11
19179722--19180105	97	3.9	98	91	4	634	48	0	5	45	1.27
19185630--19185786	66	2.4	66	85	2	217	43	15	24	15	1.86
19185772--19185824	21	2.5	21	90	0	79	32	20	45	1	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19186126--19186221	43	2.3	42	85	3	138	27	26	27	19	1.99
19188162--19188215	22	2.6	21	80	13	58	40	5	0	53	1.24
19188294--19188375	38	2.2	38	100	0	164	46	2	9	41	1.50
19190580--19190621	20	2.1	20	100	0	84	50	14	11	23	1.76
19190662--19190695	17	1.9	18	88	5	52	32	8	0	58	1.29
19192537--19192599	30	2.1	30	96	0	117	38	7	28	25	1.84
19210113--19210202	40	2.2	40	84	0	108	35	27	17	18	1.94
19212399--19212489	44	2.1	44	100	0	182	45	8	25	20	1.80
19218184--19218236	21	2.5	21	93	0	88	28	30	13	28	1.94
19228672--19228753	31	2.7	29	81	12	94	51	8	3	36	1.50
19228672--19228753	30	2.7	32	83	12	102	51	8	3	36	1.50
19229894--19229938	17	2.7	18	80	13	60	40	2	0	57	1.11
19231749--19231781	15	2.1	16	88	5	50	48	9	0	42	1.35
19232795--19232827	11	3.0	11	90	0	57	33	0	3	63	1.10
19232818--19232847	14	2.1	14	93	0	51	20	6	3	70	1.25
19236655--19236689	18	1.9	18	88	11	54	62	0	0	37	0.95
19242477--19242507	4	8.0	4	92	7	55	0	0	25	74	0.82
19249075--19249249	82	2.1	82	95	0	314	21	17	29	30	1.96
19252408--19252446	6	6.8	6	82	11	55	30	0	2	66	1.05
19252409--19252446	11	3.4	11	88	3	58	31	0	2	65	1.06
19252408--19252446	17	2.3	17	86	8	53	30	0	2	66	1.05
19256311--19256352	20	2.2	20	95	4	77	69	9	11	9	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19257837--19257875	21	1.9	21	89	5	62	41	15	17	25	1.89
19270988--19271016	14	2.0	15	93	6	51	0	48	0	51	1.00
19291559--19291693	52	2.6	52	89	0	207	34	25	14	25	1.94
19302798--19302847	21	2.4	21	96	0	91	38	28	10	24	1.87
19303401--19303611	52	3.8	59	83	9	175	33	23	14	29	1.94
19303464--19303650	52	3.6	52	88	0	266	35	26	13	24	1.93
19306302--19306326	13	1.9	13	100	0	50	64	8	20	8	1.46
19316370--19316417	17	2.8	17	80	0	60	18	18	14	47	1.82
19322272--19322434	83	2.0	83	91	0	263	38	13	21	26	1.90
19364702--19364747	17	2.6	18	76	13	51	52	6	8	32	1.58
19367510--19367550	16	2.6	16	88	0	55	70	0	14	14	1.16
19367516--19367551	16	2.4	16	90	9	58	66	0	13	19	1.24
19374675--19374735	29	2.1	29	96	0	113	44	18	11	26	1.83
19374784--19374816	13	2.5	13	95	0	57	0	18	0	81	0.68
19388978--19389016	21	1.9	21	89	5	62	12	12	7	66	1.43
19395541--19395719	62	2.9	62	81	5	218	34	21	12	30	1.91
19395668--19395854	52	3.6	52	94	0	338	34	24	14	26	1.94
19398558--19398583	7	3.7	7	100	0	52	0	26	0	73	0.84
19400244--19400295	20	2.6	19	82	11	68	25	13	28	32	1.93
19405797--19405829	7	4.7	7	100	0	66	0	27	0	72	0.85
19407505--19407557	21	2.6	19	80	16	61	33	13	20	32	1.91
19417748--19417815	30	2.3	30	87	5	93	45	0	1	52	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19418291--19418333	22	2.0	22	90	9	70	27	6	4	60	1.43
19418526--19418654	29	4.5	28	76	14	120	56	3	3	35	1.36
19418526--19418654	56	2.2	58	84	4	163	56	3	3	35	1.36
19418597--19418647	22	2.3	22	80	6	59	58	3	3	33	1.35
19418622--19418691	24	2.9	24	77	10	61	52	0	4	42	1.20
19421404--19421430	12	2.2	12	100	0	54	37	7	40	14	1.74
19422013--19422072	30	2.0	30	83	6	77	46	1	5	46	1.34
19423422--19423464	16	2.5	18	81	11	54	46	0	4	48	1.22
19425199--19425235	19	1.9	19	89	10	58	18	2	2	75	1.04
19425214--19425290	36	2.1	38	83	9	97	28	6	2	62	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132