genome.fa.s12.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  120  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36681349--36681389	2	20.5	2	94	0	73	46	0	2	51	1.14
36683736--36683774	15	2.6	15	87	0	51	2	41	15	41	1.61
36688921--36688959	21	1.9	21	89	5	62	23	0	10	66	1.22
36693689--36693738	24	2.0	24	84	3	64	52	0	2	46	1.12
36694060--36694147	43	2.0	43	93	0	149	44	13	10	31	1.77
36697071--36697134	28	2.2	30	83	8	78	45	0	1	53	1.10
36711318--36711398	39	2.0	40	88	6	121	53	3	0	43	1.18
36711318--36711399	20	4.1	20	89	9	114	53	3	0	42	1.18
36711365--36711408	23	1.9	23	90	0	70	54	0	0	45	0.99
36711393--36711436	19	2.4	17	79	20	52	68	4	0	27	1.09
36716447--36716492	14	3.2	14	78	6	56	30	0	2	67	1.03
36717203--36717299	36	2.8	34	79	6	106	69	16	5	9	1.34
36717281--36717312	12	2.8	11	95	4	55	59	34	6	0	1.23
36722657--36722698	20	2.1	20	86	0	57	40	7	4	47	1.52
36727316--36727388	36	2.0	36	89	10	114	20	23	19	36	1.95
36740825--36740879	28	2.0	28	89	7	85	43	3	3	49	1.37
36747751--36747802	16	3.2	16	77	2	50	61	0	5	32	1.20
36770235--36770291	23	2.5	22	81	16	62	19	15	19	45	1.85
36772610--36772639	15	2.0	15	93	0	51	26	23	6	43	1.78
36790612--36790658	21	2.2	21	84	0	58	34	25	12	27	1.92
36791360--36791460	36	2.8	36	93	0	175	24	25	16	32	1.96
36801730--36801792	31	2.0	31	100	0	126	33	15	0	50	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36804984--36805082	23	4.2	23	78	14	112	12	24	23	40	1.88
36804983--36805072	48	1.9	47	86	8	130	13	26	22	37	1.91
36805069--36805184	46	2.5	46	81	8	135	12	23	20	43	1.85
36805070--36805184	23	4.9	23	80	9	117	12	23	20	44	1.85
36812410--36812625	23	9.4	24	79	12	147	12	23	24	40	1.88
36813996--36814037	6	7.0	6	94	0	75	16	19	50	14	1.79
36813996--36814044	12	4.1	12	91	0	71	18	18	48	14	1.80
36813996--36814044	18	2.7	18	90	0	80	18	18	48	14	1.80
36817484--36817679	109	1.8	108	83	3	259	48	7	10	32	1.66
36818650--36818685	18	1.9	19	88	5	56	38	0	2	58	1.13
36828028--36828217	104	1.8	105	88	4	294	41	5	8	45	1.57
36828511--36828575	30	2.1	32	83	13	82	20	0	12	67	1.22
36828545--36828720	23	7.4	24	69	16	102	27	0	9	63	1.26
36828552--36828739	50	3.7	50	87	5	247	28	0	9	62	1.26
36828561--36828648	29	3.3	28	66	28	75	26	0	12	61	1.31
36828732--36828801	21	3.4	21	67	11	63	20	2	14	62	1.43
36828727--36828808	22	3.9	22	67	10	64	19	4	13	62	1.49
36828797--36828960	51	3.1	51	83	9	211	27	13	5	53	1.61
36828842--36828968	57	2.2	59	87	8	190	26	10	4	58	1.51
36836233--36836271	20	2.0	20	90	10	62	35	2	0	61	1.10
36837438--36837500	31	2.0	31	84	9	83	46	7	12	33	1.71
36838777--36838835	14	4.1	14	74	10	57	28	0	5	66	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36840010--36840045	18	2.0	18	88	0	54	19	25	0	55	1.43
36855736--36855825	40	2.3	39	80	1	108	32	20	12	35	1.89
36859899--36859985	40	2.2	40	91	2	140	29	22	12	34	1.92
36859893--36859985	39	2.4	39	88	1	141	30	21	13	34	1.92
36861038--36861090	25	2.1	25	82	6	63	33	0	0	66	0.92
36861597--36861651	28	1.9	29	88	3	85	54	7	0	38	1.28
36861597--36861668	29	2.4	29	82	13	85	51	6	0	41	1.29
36866186--36866260	4	18.2	4	78	10	71	66	0	32	1	1.00
36866194--36866247	22	2.5	22	93	3	92	66	0	33	0	0.92
36866190--36866256	25	2.8	25	73	17	70	65	0	32	1	1.02
36866300--36866345	20	2.4	19	82	7	56	34	2	2	60	1.21
36869531--36869577	21	2.2	21	88	7	69	23	14	36	25	1.93
36869686--36869722	12	3.3	12	82	17	53	0	51	0	48	1.00
36871585--36871634	16	3.2	16	73	21	52	34	0	6	60	1.21
36871828--36872095	95	2.9	94	91	3	409	47	11	2	38	1.53
36872059--36872101	21	2.1	21	86	4	61	58	13	2	25	1.48
36872449--36872495	7	7.1	7	79	13	55	0	42	0	57	0.98
36875722--36875781	22	2.7	22	69	23	54	48	6	0	45	1.29
36882527--36882571	21	2.1	21	83	0	54	11	11	20	57	1.63
36885769--36885806	19	2.0	19	100	0	76	52	5	0	42	1.24
36888891--36888946	28	2.0	28	92	0	94	53	7	5	33	1.51
36889838--36889905	10	7.6	9	75	16	61	69	0	1	29	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36889863--36889926	29	2.2	29	83	8	78	60	0	0	39	0.97
36890064--36890151	19	4.6	19	75	11	81	30	6	2	60	1.35
36890122--36890181	10	5.9	10	80	2	66	36	1	0	61	1.06
36890266--36890461	83	2.3	84	80	6	216	38	8	15	38	1.77
36890307--36890460	83	1.9	83	85	0	218	35	8	13	42	1.75
36896179--36896203	13	1.9	13	100	0	50	52	16	16	16	1.76
36902759--36902999	88	2.7	88	92	3	380	39	14	8	37	1.77
36903075--36903221	10	15.4	9	67	17	66	63	1	2	31	1.16
36903110--36903178	30	2.3	31	85	5	88	62	1	1	34	1.13
36903124--36903186	31	2.1	30	84	3	81	63	1	1	33	1.13
36903130--36903221	39	2.3	40	85	10	118	64	2	2	31	1.18
36903171--36903232	28	2.2	28	82	5	72	62	3	3	30	1.26
36903326--36903502	83	2.1	87	85	7	238	35	8	15	40	1.78
36907011--36907043	2	16.5	2	100	0	66	51	0	0	48	1.00
36910850--36910886	9	3.8	10	83	16	51	75	0	0	24	0.80
36910852--36910899	20	2.3	20	89	3	69	79	2	0	18	0.84
36912575--36912604	2	15.0	2	100	0	60	50	0	50	0	1.00
36926662--36926936	135	2.1	129	78	9	277	52	13	6	28	1.66
36950221--36950250	15	2.1	15	93	6	53	20	0	0	80	0.72
36950970--36951008	20	1.9	21	84	5	53	53	5	12	28	1.60
36953819--36953921	34	3.0	34	78	10	102	53	0	27	18	1.51
36953856--36953911	17	3.3	17	72	18	53	50	0	28	21	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36956509--36956602	34	2.8	34	80	3	109	19	30	1	48	1.55
36956497--36956599	17	6.2	17	68	14	54	20	32	0	46	1.57
36957843--36957867	6	4.2	6	100	0	50	16	16	52	16	1.76
36960358--36960404	22	2.1	22	84	7	60	44	0	8	46	1.33
36961444--36961512	27	2.5	26	79	11	75	49	23	4	23	1.68
36981197--36981260	29	2.2	30	80	8	69	40	1	6	51	1.36
36981611--36981643	2	17.0	2	93	6	59	48	0	0	51	1.00
36985773--36985848	21	3.6	21	87	3	107	47	10	21	21	1.80
36985775--36985841	22	3.1	22	86	4	100	47	8	22	20	1.78
36987250--36987304	29	1.9	28	88	3	83	58	3	7	30	1.43
36987992--36988092	27	3.4	27	68	26	80	36	11	5	45	1.65
36987968--36988095	63	2.0	63	100	0	256	34	13	6	46	1.68
36991063--36991138	22	3.5	22	75	17	77	6	5	19	68	1.32
36991168--36991237	12	5.8	12	78	6	70	10	2	15	71	1.25
36991685--36991730	21	2.2	20	92	7	74	54	10	21	13	1.69
36991685--36991730	20	2.2	20	92	3	74	54	10	21	13	1.69
36993914--36993943	2	15.0	2	100	0	60	50	0	0	50	1.00
36996303--36996327	2	12.5	2	100	0	50	52	0	0	48	1.00
37005211--37005251	19	2.2	18	86	4	55	41	0	9	48	1.36
37010752--37010804	26	2.0	27	92	3	90	43	13	16	26	1.85
37020096--37020133	19	2.0	20	94	5	69	84	0	5	10	0.77
37038134--37038173	7	5.7	7	100	0	80	25	30	0	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37043270--37043294	2	12.5	2	100	0	50	48	0	0	52	1.00
37044922--37044973	18	3.0	18	86	10	65	53	0	0	46	1.00
37046030--37046106	28	2.6	30	77	10	77	57	3	1	37	1.26
37047735--37047781	24	1.9	25	86	4	69	46	0	2	51	1.13
37052053--37052095	18	2.4	18	80	7	52	51	0	2	46	1.13
37052706--37052741	3	12.0	3	100	0	72	66	0	0	33	0.92
37054403--37054453	25	2.0	26	96	3	95	19	3	72	3	1.16
37054451--37054495	12	3.8	12	100	0	90	31	0	68	0	0.89
37054451--37054495	18	2.5	18	100	0	90	31	0	68	0	0.89
37054639--37054673	18	1.9	19	88	11	56	40	0	2	57	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132