genome.fa.s12.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  98  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30066786--30066833	24	2.0	24	91	0	78	58	0	14	27	1.37
30066920--30067013	39	2.4	40	85	3	120	36	5	23	35	1.78
30071765--30071812	2	24.0	2	93	0	78	45	2	2	50	1.25
30071816--30071846	16	2.0	16	93	6	55	22	6	0	70	1.09
30072587--30072821	30	7.9	30	71	11	162	33	25	7	33	1.84
30072598--30072779	89	2.0	89	82	4	215	35	25	7	31	1.84
30072601--30072822	59	3.7	59	76	5	198	32	26	7	33	1.85
30080764--30080965	39	5.1	39	78	9	169	27	28	16	26	1.97
30080820--30080981	39	4.1	39	79	8	175	25	30	16	27	1.97
30080820--30080981	78	2.1	79	83	4	202	25	30	16	27	1.97
30081169--30081324	85	1.8	85	84	2	215	37	15	23	23	1.93
30080983--30082004	208	5.0	207	86	2	1298	38	16	21	23	1.93
30081365--30081525	85	1.9	85	85	2	225	34	12	24	27	1.92
30081781--30081884	36	2.9	36	82	1	127	34	17	23	25	1.96
30081978--30082032	28	2.0	28	85	7	76	34	18	16	30	1.93
30083622--30083824	29	6.9	30	74	9	150	35	28	5	30	1.81
30083620--30083814	88	2.2	88	80	3	223	36	28	6	29	1.81
30087080--30087122	8	5.1	8	84	15	52	53	0	0	46	1.00
30092423--30092536	36	3.2	35	83	6	156	39	12	23	24	1.89
30108805--30108856	6	8.5	6	75	12	52	38	1	0	59	1.08
30108796--30108856	17	3.3	18	90	9	97	39	1	0	59	1.08
30108796--30108873	37	2.1	36	88	6	113	38	2	1	57	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30108805--30108873	17	3.8	17	83	12	84	37	2	1	57	1.22
30110713--30110910	30	6.6	30	79	6	197	35	18	3	41	1.68
30110714--30110910	60	3.3	59	87	3	263	35	18	3	42	1.68
30110892--30111083	29	6.6	28	70	22	105	32	29	3	35	1.73
30110892--30111083	58	3.3	57	84	7	228	32	29	3	35	1.73
30119411--30119863	101	4.5	100	88	4	671	37	22	26	13	1.91
30119411--30119862	201	2.2	199	92	2	771	37	22	26	13	1.91
30120069--30120108	17	2.3	18	86	4	55	40	2	2	55	1.27
30120344--30120391	25	1.9	25	83	8	62	18	52	8	20	1.71
30121050--30121191	30	4.7	30	84	5	162	36	18	2	42	1.65
30121040--30121191	60	2.6	59	84	2	180	36	19	3	40	1.68
30121115--30121306	29	6.6	29	75	12	83	34	24	2	39	1.67
30121173--30121366	58	3.4	57	80	7	207	32	27	3	36	1.74
30121260--30121360	29	3.5	29	72	17	93	37	26	1	33	1.68
30128584--30128644	18	3.4	18	84	6	79	65	1	32	0	1.02
30128584--30128644	6	10.7	6	77	13	58	65	1	32	0	1.02
30132770--30132808	21	1.9	21	89	5	62	41	5	12	41	1.65
30134089--30134160	28	2.5	29	84	4	101	33	4	15	47	1.64
30134473--30134498	2	13.0	2	100	0	52	50	0	0	50	1.00
30135777--30135841	16	3.8	16	73	25	60	9	21	32	36	1.85
30135793--30135883	21	4.6	21	76	18	95	6	21	31	39	1.79
30135775--30135862	37	2.4	37	94	0	149	9	22	30	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30135793--30135913	58	2.1	58	95	0	215	9	21	30	38	1.84
30135851--30135975	37	3.4	37	87	0	178	10	20	32	36	1.87
30135778--30135950	95	1.8	95	89	0	274	9	20	31	38	1.84
30138854--30138919	34	1.9	34	87	6	98	27	12	21	39	1.88
30145081--30145129	15	3.3	15	94	0	80	4	38	12	44	1.61
30148041--30148637	297	2.0	296	94	0	1052	30	22	14	32	1.93
30162962--30163010	20	2.4	21	90	6	75	61	6	2	30	1.32
30169046--30169199	78	2.0	78	97	0	290	38	24	20	17	1.93
30179805--30179878	37	2.0	37	97	0	139	31	9	10	48	1.70
30182971--30183071	36	2.8	36	89	1	139	36	13	27	21	1.92
30183735--30183780	21	2.2	21	84	0	56	21	13	21	43	1.86
30198332--30198365	14	2.4	14	95	0	59	58	14	8	17	1.61
30199130--30199179	16	3.2	15	78	15	57	58	4	6	32	1.41
30200318--30200359	19	2.2	19	91	0	66	38	2	11	47	1.53
30206625--30206916	37	7.9	37	89	2	435	38	32	19	9	1.85
30206625--30206722	16	5.5	16	65	21	52	38	30	20	10	1.86
30206789--30206894	21	5.5	21	63	28	65	36	35	20	6	1.79
30220248--30220277	13	2.4	12	94	5	51	76	0	3	20	0.92
30223141--30223195	26	2.0	29	86	10	80	72	10	3	12	1.24
30227577--30227628	25	2.1	25	96	0	95	36	17	7	38	1.78
30229497--30229569	31	2.4	29	80	13	83	43	6	15	34	1.73
30230291--30230322	3	10.7	3	100	0	64	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30236272--30236304	16	2.0	17	88	5	50	9	12	3	75	1.14
30237888--30237939	6	8.1	7	95	4	53	65	1	0	32	1.04
30237898--30237939	3	14.0	3	100	0	84	66	0	0	33	0.92
30238622--30238655	16	2.1	17	88	5	52	61	0	0	38	0.96
30239063--30239127	2	32.5	2	100	0	130	50	0	0	49	1.00
30251501--30251529	6	4.8	6	100	0	58	13	34	0	51	1.42
30251790--30251825	16	2.1	16	90	10	54	44	0	0	55	0.99
30252107--30252175	28	2.4	27	81	11	75	33	8	4	53	1.51
30256320--30256413	37	2.4	39	82	7	111	53	4	3	39	1.37
30256396--30256444	20	2.7	18	77	22	57	51	2	2	44	1.24
30256514--30256553	20	2.0	20	85	0	53	15	10	57	17	1.64
30256538--30256567	15	2.0	15	93	0	51	6	3	73	16	1.18
30257441--30257478	16	2.4	16	83	12	51	18	0	7	73	1.06
30258786--30260217	330	4.3	337	84	6	1834	30	8	9	51	1.64
30269629--30269677	21	2.3	21	96	0	89	34	8	26	30	1.86
30275457--30275491	17	2.1	17	89	5	54	31	8	5	54	1.54
30277695--30277734	16	2.4	17	87	4	55	50	15	15	20	1.79
30277857--30277885	14	2.0	15	93	6	51	0	41	0	58	0.98
30287901--30287962	21	2.9	22	78	4	65	37	24	14	24	1.93
30294463--30294522	25	2.4	24	86	8	84	33	3	1	61	1.22
30295394--30295483	18	5.0	18	83	0	108	48	7	27	15	1.72
30303535--30303599	12	5.1	12	74	18	51	63	0	35	1	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30304646--30304685	5	7.8	5	88	5	62	77	2	20	0	0.88
30305022--30305046	13	1.9	13	100	0	50	24	16	12	48	1.79
30312595--30312646	21	2.5	21	78	9	63	65	7	3	23	1.35
30313164--30313365	20	9.1	21	66	20	65	69	19	3	6	1.27
30313163--30313277	44	2.6	41	77	13	106	68	20	3	7	1.29
30313234--30313268	12	2.9	12	86	0	52	71	17	5	5	1.25
30313258--30313361	18	5.2	18	70	22	66	71	19	4	4	1.23
30313208--30313339	39	3.1	43	75	15	116	70	18	3	6	1.25
30313264--30313361	21	4.8	20	77	11	92	72	18	4	5	1.19
30313177--30313327	12	13.3	11	65	18	51	71	18	3	6	1.22
30315253--30315386	15	8.9	15	82	3	126	27	21	22	28	1.99
30315253--30315386	30	4.5	30	81	0	142	27	21	22	28	1.99
30318445--30318596	15	10.1	15	82	2	162	27	23	21	27	1.99
30318928--30318963	11	3.2	11	92	4	54	52	0	0	47	1.00
30318932--30318971	12	3.4	12	89	3	55	57	0	0	42	0.98
30320645--30320726	30	2.9	29	84	10	100	20	34	15	29	1.94
30328593--30328635	10	4.3	9	83	16	50	0	18	0	81	0.69
30328642--30328680	20	2.0	20	85	10	53	2	10	5	82	0.93
30338416--30338450	17	2.1	17	89	5	54	31	8	5	54	1.54
30339930--30340364	59	7.4	60	82	8	423	35	2	29	31	1.73
30339962--30340055	30	3.2	30	68	24	90	30	3	35	30	1.74
30340115--30340335	30	7.4	31	65	23	109	36	2	28	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30339933--30340336	177	2.3	177	84	5	525	35	2	29	31	1.72
30339933--30340364	118	3.7	117	83	7	493	36	2	29	31	1.72
30342232--30342323	17	5.7	16	83	12	116	57	0	1	41	1.06
30342243--30342335	6	15.8	6	73	16	79	56	1	1	40	1.13
30342243--30342335	11	7.9	11	72	15	71	56	1	1	40	1.13
30342244--30342323	17	4.9	17	86	9	121	58	0	1	40	1.06
30344330--30344376	17	2.8	17	87	3	60	48	17	14	19	1.81
30345186--30345246	6	10.7	6	72	10	56	42	0	3	54	1.17
30345184--30345246	17	3.7	17	75	12	58	42	0	3	53	1.16
30345227--30345266	21	2.0	20	90	5	62	40	0	7	52	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132