genome.fa.s12.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  70  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20022905--20022957	22	2.4	22	93	6	90	45	26	5	22	1.74
20023748--20023772	12	2.1	12	100	0	50	52	24	0	24	1.48
20024910--20025484	288	2.0	287	98	0	1114	26	9	18	44	1.81
20026310--20026334	12	2.1	12	100	0	50	44	24	16	16	1.86
20031873--20031897	13	1.9	13	100	0	50	24	0	0	76	0.80
20037973--20037997	12	2.1	12	100	0	50	24	32	16	28	1.96
20052064--20052495	192	2.2	192	85	0	587	27	25	18	28	1.98
20059293--20059335	17	2.5	17	84	3	50	53	11	16	18	1.72
20066030--20066993	481	2.0	481	98	0	1883	29	18	20	30	1.97
20069375--20069673	148	2.0	148	98	0	571	24	27	14	33	1.95
20071109--20071543	192	2.3	192	86	0	618	26	25	18	29	1.98
20074199--20074247	23	2.0	23	88	7	71	69	0	0	30	0.89
20076679--20076731	2	26.5	2	96	0	97	50	0	0	49	1.00
20077152--20077366	37	5.7	35	75	12	164	14	16	31	38	1.88
20077249--20077319	21	3.4	21	90	0	106	11	16	33	38	1.85
20077155--20077326	79	2.3	73	81	7	193	12	16	33	37	1.87
20080267--20080312	15	3.0	15	84	12	58	2	21	0	76	0.90
20080894--20080937	18	2.3	19	84	7	54	52	15	18	13	1.75
20081036--20081083	24	2.1	23	81	11	55	6	29	8	56	1.53
20094417--20094537	37	3.3	37	84	2	145	15	16	27	40	1.89
20094519--20094558	21	1.9	21	94	0	71	12	20	30	37	1.89
20094433--20094605	95	1.8	95	82	5	224	15	17	28	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20097605--20097673	18	3.8	17	81	11	66	39	14	8	37	1.77
20100883--20100929	17	2.7	17	90	3	67	42	14	6	36	1.72
20102158--20102235	24	3.2	26	61	32	62	37	10	23	29	1.88
20102162--20102264	48	2.1	48	90	0	161	35	10	23	30	1.89
20106224--20106273	25	2.0	24	84	3	64	24	0	4	72	1.02
20109061--20109294	52	4.5	52	88	3	337	36	22	15	25	1.93
20116913--20116966	3	19.0	3	85	11	78	33	0	1	64	1.04
20125177--20125283	24	4.5	24	79	2	90	19	26	18	35	1.95
20132225--20132355	24	5.5	24	76	7	113	22	28	13	35	1.93
20132224--20132355	48	2.8	48	84	2	185	22	28	13	35	1.92
20141484--20141522	16	2.3	18	86	8	55	15	0	10	74	1.07
20146607--20146631	13	1.9	13	100	0	50	72	0	0	28	0.86
20147695--20147778	20	4.2	20	81	4	80	41	15	20	22	1.89
20147697--20147776	27	3.0	27	77	3	81	40	16	20	23	1.91
20147726--20147785	20	3.0	20	87	2	77	43	15	16	25	1.86
20148348--20148391	11	3.8	12	82	17	58	70	0	22	6	1.11
20148345--20148391	22	2.1	23	92	4	78	72	0	21	6	1.07
20157946--20158161	53	4.1	53	88	3	303	28	15	22	33	1.94
20192648--20192704	23	2.3	25	82	14	66	15	12	8	63	1.52
20221578--20221620	22	2.0	22	81	9	52	32	2	13	51	1.54
20246628--20246710	23	3.6	22	88	11	114	48	32	0	19	1.49
20250451--20250492	20	2.1	20	82	8	50	9	16	4	69	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20252292--20252327	15	2.4	15	90	0	54	58	0	38	2	1.13
20252742--20252778	18	2.1	18	89	0	56	18	10	10	59	1.59
20277787--20277842	18	3.1	18	82	5	60	23	19	26	30	1.98
20284948--20284974	14	1.9	14	100	0	54	29	18	7	44	1.77
20287296--20287334	14	2.7	14	88	4	51	12	17	0	69	1.19
20287317--20287356	21	2.0	20	85	5	53	22	7	5	65	1.38
20296302--20296488	52	3.6	52	83	5	252	35	22	14	26	1.93
20303079--20303248	52	3.0	60	81	14	207	31	23	15	29	1.95
20303145--20303272	52	2.5	52	97	0	238	35	25	14	25	1.93
20312167--20312417	24	10.5	24	92	0	403	31	23	19	25	1.98
20317409--20317485	19	3.9	19	76	6	82	49	2	5	42	1.39
20317424--20317546	40	3.1	39	78	4	138	46	4	7	41	1.53
20317414--20317529	20	5.9	19	70	9	81	47	5	6	40	1.53
20327898--20327930	6	5.7	6	92	7	59	15	0	0	84	0.61
20327897--20327930	11	3.0	11	91	8	59	17	0	0	82	0.67
20327897--20327938	12	3.6	12	81	15	52	21	0	0	78	0.75
20329065--20329125	26	2.4	25	83	8	77	37	18	3	40	1.67
20332778--20332834	16	3.6	16	72	9	62	50	5	15	28	1.65
20332772--20332833	32	1.9	32	96	0	115	51	3	16	29	1.59
20341246--20341274	12	2.4	12	100	0	58	48	6	10	34	1.64
20351560--20351600	19	2.4	16	84	15	55	2	17	0	80	0.82
20352148--20352213	34	1.9	34	81	6	80	46	13	18	21	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20370413--20370519	24	4.5	24	92	0	178	31	24	19	24	1.98
20372288--20372340	26	2.0	26	81	0	61	30	20	18	30	1.97
20378189--20378283	38	2.5	38	76	8	104	31	25	13	29	1.94
20381658--20381698	16	2.5	16	88	11	57	75	4	19	0	0.98
20381658--20381698	5	7.6	5	89	10	55	75	4	19	0	0.98
20382207--20382280	38	2.0	37	83	2	94	35	22	8	33	1.84
20382284--20382337	26	2.1	26	85	0	72	25	18	25	29	1.98
20383993--20384023	16	1.9	16	93	0	53	22	16	0	61	1.34
20382730--20384503	884	2.0	884	88	1	2637	28	17	17	37	1.92
20387265--20387335	37	1.9	37	91	0	115	26	29	19	23	1.98
20387288--20387374	37	2.4	37	82	0	93	31	32	18	18	1.95
20387440--20387498	26	2.3	26	91	2	93	30	16	23	28	1.97
20388280--20388310	16	1.9	16	93	0	53	22	16	0	61	1.34
20389205--20389235	16	1.9	16	93	0	53	22	16	0	61	1.34
20392836--20392916	32	2.5	32	95	4	144	38	23	23	14	1.92
20407310--20407365	16	3.5	16	73	9	60	50	3	19	26	1.64
20407305--20407366	32	1.9	32	96	0	115	50	3	20	25	1.64
20410227--20410267	17	2.3	18	91	4	66	53	7	19	19	1.68
20413462--20413540	38	2.1	37	88	2	113	30	12	25	31	1.93
20413556--20413639	37	2.3	37	91	0	132	25	20	30	23	1.98
20414657--20414723	17	3.9	17	84	0	80	50	13	19	16	1.77
20414657--20414723	34	2.0	34	87	0	98	50	13	19	16	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20417911--20417982	37	1.9	37	88	0	108	20	15	29	34	1.93
20420259--20420334	11	6.8	11	68	24	52	42	1	2	53	1.23
20421023--20421088	30	2.2	30	91	0	105	36	25	21	16	1.94
20421155--20421280	61	2.1	61	83	3	155	34	24	19	21	1.96
20421286--20421401	30	3.9	30	87	0	151	44	23	12	19	1.84
20428305--20428346	15	2.8	16	85	7	52	38	11	21	28	1.89
20442856--20442895	10	3.6	11	83	12	55	75	0	25	0	0.81
20442858--20442894	13	2.9	13	88	11	51	72	0	27	0	0.84
20444178--20444212	16	2.2	16	100	0	70	20	5	45	28	1.73
20445647--20445696	23	2.1	24	88	3	75	18	2	30	50	1.58
20446244--20446286	21	2.0	23	90	9	72	53	0	0	46	1.00
20466358--20466406	21	2.3	21	83	13	57	63	0	34	2	1.06
20467464--20467509	15	3.0	15	84	12	58	76	0	21	2	0.90
20469034--20469063	14	2.2	14	94	5	53	30	23	10	36	1.87
20475052--20475093	17	2.7	16	85	10	52	80	0	19	0	0.70
20476915--20476959	24	1.9	23	86	4	63	6	48	0	44	1.29
20477099--20477158	30	2.0	31	84	15	81	10	16	0	73	1.09
20478352--20478821	158	3.0	155	82	4	561	30	24	23	22	1.99
20493265--20493295	16	1.9	16	93	0	53	70	9	3	16	1.26
20503105--20503276	89	1.9	89	91	0	281	37	11	12	38	1.79
20503512--20503567	20	2.9	19	86	2	67	48	12	5	33	1.64
20503518--20503567	19	2.5	20	87	3	66	50	12	4	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20517790--20518560	277	2.8	277	89	2	1199	27	21	16	34	1.94
20524383--20524455	23	3.4	23	67	21	77	61	8	2	27	1.38
20524377--20524472	40	2.4	41	96	3	185	57	6	2	34	1.36
20525678--20525871	97	2.0	97	94	0	343	31	15	15	36	1.90
20535754--20535799	22	2.1	21	84	4	56	43	0	10	45	1.39
20535846--20536450	302	2.0	302	99	0	1201	30	8	22	38	1.83
20536666--20536723	28	2.1	28	90	3	91	22	13	15	48	1.80
20565560--20565612	21	2.5	23	76	17	60	56	0	35	7	1.28
20568474--20568610	36	3.8	36	82	3	168	36	23	16	24	1.94
20568475--20568616	72	2.0	72	87	0	203	37	22	16	23	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132