genome.fa.s12.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  102  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31236983--31237059	40	1.9	41	83	2	102	79	0	12	7	0.94
31236976--31237040	29	2.3	29	94	2	114	83	0	10	6	0.82
31236976--31237039	6	11.2	6	74	15	64	82	0	10	6	0.82
31243970--31244016	15	2.9	18	70	23	50	38	0	0	61	0.96
31243969--31244017	16	3.0	17	80	17	59	38	0	0	61	0.96
31257526--31257571	20	2.4	19	89	10	67	28	2	4	65	1.23
31261395--31261434	20	2.0	20	100	0	80	25	0	15	60	1.35
31262220--31262252	16	2.1	16	88	5	50	33	0	42	24	1.55
31263343--31263469	53	2.4	54	81	5	141	48	1	28	21	1.59
31263453--31263511	20	2.9	20	76	14	66	37	5	28	28	1.78
31263453--31263510	21	2.8	21	77	12	66	37	5	29	27	1.78
31265530--31265686	79	2.0	79	100	0	314	42	8	13	35	1.76
31268334--31268380	24	2.0	24	83	4	60	27	6	19	46	1.74
31269810--31269856	24	2.0	24	95	0	85	23	4	34	38	1.74
31272367--31272405	17	2.2	18	86	4	53	30	0	15	53	1.42
31276528--31276748	43	5.1	43	76	8	184	31	22	18	28	1.97
31276778--31276868	43	2.1	43	89	0	137	30	27	18	23	1.98
31277133--31277276	66	2.2	66	75	3	146	15	24	18	41	1.89
31280229--31280451	41	5.4	41	91	1	313	25	24	10	39	1.87
31287441--31287621	40	4.4	41	86	3	240	24	25	11	38	1.88
31292426--31292457	6	5.3	6	100	0	64	31	0	15	53	1.43
31292547--31292582	8	4.5	8	85	0	54	58	2	0	38	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31292547--31292585	16	2.4	16	91	0	60	53	2	0	43	1.14
31292644--31292765	36	3.2	36	74	14	113	43	1	13	41	1.53
31292647--31292817	41	4.2	41	74	12	156	44	1	10	43	1.46
31292644--31292806	77	2.1	77	95	0	290	44	1	11	42	1.47
31292787--31292814	8	3.5	8	100	0	56	64	0	0	35	0.94
31292713--31292956	92	2.6	95	79	9	289	46	1	8	43	1.44
31293611--31293635	13	1.9	13	100	0	50	32	24	4	40	1.73
31295218--31295317	17	5.9	17	70	13	55	37	10	39	14	1.79
31295472--31295565	42	2.2	43	84	5	120	18	27	20	34	1.95
31297113--31297335	41	5.4	41	86	0	302	22	27	17	32	1.96
31297103--31297375	123	2.2	122	80	5	307	21	27	16	34	1.95
31297326--31297416	40	2.2	40	80	1	101	14	21	23	40	1.90
31299093--31299121	12	2.3	13	94	5	51	55	0	0	44	0.99
31302041--31302091	20	2.5	20	87	0	75	33	7	11	47	1.69
31303267--31303318	20	2.9	17	73	15	50	48	0	0	51	1.00
31304217--31304275	29	2.0	30	86	3	84	47	15	6	30	1.71
31305893--31305973	34	2.4	34	93	2	135	54	1	16	28	1.50
31308355--31308408	21	2.5	21	82	8	65	68	3	1	25	1.16
31308939--31308982	20	2.2	20	91	0	70	34	0	0	65	0.93
31321267--31321354	42	2.1	42	91	0	140	21	26	23	28	1.99
31322184--31322302	62	1.9	62	91	0	193	32	22	15	29	1.94
31322420--31322578	68	2.3	70	84	2	205	29	22	25	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31322416--31322540	35	3.6	35	75	6	121	31	23	23	22	1.99
31323892--31323924	15	2.2	15	100	0	66	57	24	6	12	1.57
31324056--31324114	24	2.5	24	88	0	91	49	8	13	28	1.71
31333889--31333939	21	2.4	21	81	18	61	35	0	1	62	1.06
31335537--31338869	334	10.0	335	90	3	5048	35	19	12	31	1.89
31335537--31338869	666	5.0	666	89	4	4964	35	19	12	31	1.89
31344827--31344860	14	2.4	14	90	0	50	38	14	0	47	1.45
31345454--31345518	24	2.7	24	92	0	103	50	7	13	27	1.69
31347432--31347496	24	2.7	24	92	0	103	52	9	12	26	1.68
31349997--31350148	73	2.1	74	96	1	279	35	16	14	33	1.89
31354008--31354082	39	1.9	39	88	0	114	12	22	22	42	1.86
31353934--31354121	23	8.4	22	73	18	138	12	24	21	42	1.87
31359754--31359796	4	10.5	4	83	14	52	74	4	2	18	1.10
31361224--31361257	14	2.5	14	90	4	52	61	0	0	38	0.96
31365253--31365297	23	2.0	23	86	0	63	33	4	4	57	1.38
31367241--31367273	15	2.1	17	88	11	52	63	0	0	36	0.95
31371126--31371192	35	1.9	35	84	6	91	32	14	2	49	1.59
31371125--31371181	7	8.1	7	75	7	53	31	14	1	52	1.51
31373296--31373876	241	2.4	240	93	0	1004	39	10	5	44	1.62
31376638--31376681	20	2.2	20	84	8	54	31	0	0	68	0.90
31387141--31387177	17	2.2	17	90	0	56	51	0	29	18	1.47
31388026--31388095	18	3.7	18	73	14	59	41	0	5	52	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31388045--31388095	22	2.2	22	86	6	66	43	0	5	50	1.26
31389462--31389978	92	5.6	92	92	0	818	35	16	16	31	1.92
31389626--31389872	40	5.6	40	68	24	149	34	17	15	31	1.92
31408316--31408599	138	2.1	138	97	0	532	33	17	15	33	1.92
31411235--31411274	11	3.7	11	83	3	55	50	0	0	50	1.00
31411300--31411371	36	2.1	34	89	5	108	59	0	1	38	1.06
31411345--31411383	20	1.9	21	84	5	53	64	0	0	35	0.94
31411722--31411809	10	9.3	10	70	9	51	28	5	1	64	1.23
31411715--31411797	27	3.0	27	79	8	105	33	4	1	60	1.26
31411675--31411796	55	2.2	58	86	4	169	31	7	1	59	1.35
31411722--31411798	18	4.2	18	69	9	57	29	5	1	63	1.24
31411783--31411821	20	1.9	21	89	5	62	25	2	0	71	0.98
31412922--31412977	6	9.5	6	73	11	53	21	1	0	76	0.87
31413398--31413433	17	2.1	17	90	10	56	27	0	2	69	1.02
31416240--31416317	4	19.8	4	90	2	104	44	25	2	26	1.67
31422834--31422883	18	2.9	17	80	11	57	36	0	0	64	0.94
31422842--31422889	20	2.5	19	83	13	62	33	0	0	66	0.92
31423223--31423289	30	2.3	29	85	10	91	61	1	2	34	1.20
31424245--31424286	19	2.3	18	87	4	57	71	2	2	23	1.10
31424240--31424286	18	2.6	18	80	9	60	70	2	2	25	1.10
31424817--31425020	60	3.4	59	76	10	207	41	23	0	35	1.55
31424813--31425020	30	6.9	30	74	5	177	41	23	0	34	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31425956--31426021	32	2.1	32	91	0	105	28	13	12	45	1.80
31427671--31428170	169	3.0	169	97	0	934	30	13	23	33	1.93
31429458--31429496	15	2.6	15	80	15	53	76	0	23	0	0.78
31430630--31430941	112	2.8	110	81	5	373	29	20	10	39	1.85
31431657--31432845	39	30.3	39	67	15	341	28	29	17	25	1.98
31431650--31432818	78	14.9	78	84	3	1212	28	29	17	24	1.98
31432506--31432824	120	2.7	118	80	10	330	29	28	17	25	1.97
31432510--31432845	81	4.2	80	82	8	309	29	28	16	25	1.96
31434475--31434680	30	6.9	29	73	14	143	38	21	2	37	1.67
31434475--31434642	59	2.8	59	82	8	198	39	22	2	35	1.69
31435891--31435928	20	2.0	20	89	5	60	55	5	2	36	1.37
31435956--31435989	16	2.1	17	88	5	52	38	0	2	58	1.13
31441257--31441323	27	2.5	27	95	0	116	43	7	14	34	1.74
31442329--31442384	20	2.9	18	77	12	58	66	3	3	26	1.25
31445025--31445059	2	17.5	2	93	0	61	0	45	0	54	0.99
31445618--31445652	2	17.5	2	100	0	70	48	0	0	51	1.00
31445696--31445724	2	14.5	2	100	0	58	0	0	48	51	1.00
31447021--31447265	121	2.0	121	97	0	463	35	17	11	36	1.85
31448261--31448314	21	2.5	21	85	11	74	61	5	1	31	1.30
31451485--31451551	33	2.0	33	100	0	134	29	5	20	43	1.76
31455086--31455117	5	6.8	5	92	7	50	81	0	0	18	0.70
31455094--31455196	29	3.6	27	69	19	66	62	2	8	26	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31456329--31456353	13	1.9	13	100	0	50	48	0	0	52	1.00
31457281--31457343	31	2.0	31	90	0	99	39	4	14	41	1.67
31460735--31460761	2	13.5	2	100	0	54	51	0	0	48	1.00
31463335--31463371	5	7.6	5	96	3	67	59	0	0	40	0.97
31466708--31466746	17	2.3	17	90	0	60	15	12	25	46	1.81
31470212--31470275	32	2.0	32	93	0	110	21	12	20	45	1.84
31475605--31475657	24	2.2	25	83	9	67	20	9	15	54	1.68
31485603--31485640	20	1.9	20	84	10	51	47	10	23	18	1.79
31490242--31490281	18	2.2	18	90	0	62	30	22	22	25	1.99
31492644--31492690	24	2.0	24	91	0	76	23	2	25	48	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132