genome.fa.s12.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  57  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15894134--15894163	16	1.9	16	93	6	53	43	13	0	43	1.43
15908009--15908056	20	2.4	20	85	0	69	25	37	10	27	1.88
15909832--15910546	370	1.9	368	86	1	1018	27	10	21	40	1.86
15911308--15911369	29	2.1	30	90	3	99	30	11	19	38	1.87
15911312--15911377	29	2.2	30	86	2	89	31	12	13	42	1.81
15911601--15911653	24	2.2	24	82	0	61	54	5	3	35	1.42
15913274--15913312	20	2.0	20	89	0	60	48	2	7	41	1.45
15914949--15915144	71	2.8	71	98	0	374	25	8	31	34	1.86
15916406--15916458	24	2.2	24	86	0	70	54	7	3	33	1.46
15925594--15925647	21	2.6	21	88	5	74	29	12	27	29	1.94
15931183--15931218	18	2.0	18	100	0	72	33	5	5	55	1.46
15936395--15936440	24	1.9	23	86	8	65	56	6	4	32	1.45
15936508--15936541	13	2.6	13	85	0	50	58	11	0	29	1.33
15937472--15937511	16	2.6	16	92	4	64	0	20	0	80	0.72
15938479--15938527	5	8.8	5	81	16	53	75	2	2	20	1.00
15938476--15938516	11	3.7	11	87	12	57	75	2	0	21	0.92
15938479--15938527	17	2.9	16	87	9	62	75	2	2	20	1.00
15938479--15938527	22	2.2	23	92	3	82	75	2	2	20	1.00
15938480--15938527	12	4.2	12	84	15	57	77	2	2	18	0.97
15941385--15941445	19	3.3	18	82	8	70	73	0	8	18	1.07
15941410--15941462	16	3.4	15	82	12	63	75	0	1	22	0.90
15941382--15941462	17	5.0	16	80	14	69	75	0	6	18	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15942639--15942672	13	2.6	13	85	0	50	58	11	0	29	1.33
15943099--15943142	17	2.8	15	80	12	52	54	0	2	43	1.12
15944228--15944341	48	2.4	47	85	7	149	50	6	1	41	1.37
15945303--15945383	23	3.5	23	88	5	119	25	3	7	62	1.38
15945300--15945405	46	2.3	48	79	9	121	24	2	6	66	1.30
15945561--15945592	17	1.9	16	93	6	55	21	0	12	65	1.25
15945563--15945600	17	2.2	17	86	9	51	23	0	13	63	1.30
15945574--15945641	35	1.9	35	85	5	93	25	1	5	67	1.21
15948869--15948914	16	2.9	16	84	12	67	86	4	6	2	0.75
15949823--15949893	28	2.4	30	79	13	94	77	1	19	1	0.92
15949824--15949890	10	6.9	10	74	16	61	77	1	19	1	0.92
15949823--15949892	7	9.7	7	71	17	54	78	1	18	1	0.90
15950203--15950406	112	1.8	113	86	1	302	27	20	11	40	1.87
15950814--15950972	49	3.2	49	76	7	135	35	14	25	24	1.93
15950943--15951055	49	2.3	49	89	0	172	39	12	23	23	1.89
15953237--15953311	24	3.1	24	84	3	98	22	10	9	57	1.61
15955248--15955298	24	2.1	24	92	0	84	23	11	9	54	1.66
15955256--15955310	24	2.3	24	87	0	74	27	14	10	47	1.78
15962883--15963020	72	1.9	72	81	0	168	19	23	21	35	1.96
15969530--15969694	55	3.0	55	89	1	242	47	15	9	26	1.76
15969938--15969984	6	8.0	6	85	4	51	19	25	0	55	1.43
15969950--15969986	17	2.2	17	90	0	56	21	21	0	56	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15969944--15969988	23	2.0	22	86	4	63	22	22	0	55	1.44
15970971--15971024	25	2.1	25	82	6	63	53	9	12	24	1.68
15972808--15972907	30	3.3	30	74	4	92	58	8	8	26	1.54
15977350--15978039	199	3.5	199	90	1	1049	37	14	12	35	1.83
15980672--15980767	48	2.0	49	89	2	149	23	20	23	31	1.98
15980668--15980767	24	4.1	24	84	2	119	25	21	23	31	1.98
15982412--15982503	44	2.1	44	85	0	121	34	20	17	27	1.95
15983675--15983712	18	2.1	18	85	9	51	26	10	13	50	1.73
15984191--15984240	23	2.2	22	86	10	66	38	4	0	58	1.17
15984197--15984247	23	2.2	23	80	10	59	33	5	0	60	1.21
15984288--15984323	16	2.2	16	100	0	72	30	5	30	33	1.81
15984556--15984596	19	2.2	19	86	4	57	41	2	0	56	1.13
15985396--15985434	20	2.0	19	85	14	53	53	0	5	41	1.23
15986369--15986413	24	1.9	23	86	4	63	24	2	11	62	1.40
15986365--15986420	23	2.4	24	78	3	69	28	1	8	60	1.37
16002938--16002998	18	3.4	17	76	14	59	37	1	3	57	1.25
16003922--16003956	15	2.2	16	90	5	54	60	0	34	5	1.21
16003927--16003960	16	2.1	17	89	10	54	55	0	41	2	1.15
16003932--16003969	16	2.4	16	86	8	51	63	0	31	5	1.17
16005440--16005471	15	2.1	16	94	5	57	40	0	28	31	1.57
16007514--16007991	158	3.0	157	91	2	744	29	24	23	23	1.99
16008979--16009091	55	2.1	55	100	0	226	21	25	12	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16009840--16009882	3	14.3	3	100	0	86	67	0	0	32	0.91
16015951--16016015	18	3.6	18	66	12	51	60	9	9	21	1.55
16028903--16028929	5	5.4	5	100	0	54	22	0	0	77	0.76
16029242--16029311	35	2.0	36	91	2	115	58	1	2	37	1.22
16029551--16029588	16	2.4	16	90	0	58	28	18	5	47	1.70
16031313--16031365	23	2.3	23	96	0	97	32	13	20	33	1.91
16031636--16031675	19	2.0	20	85	4	55	27	32	0	40	1.57
16036479--16036577	23	4.4	23	84	6	123	34	19	24	22	1.96
16036479--16036577	47	2.2	43	82	7	117	34	19	24	22	1.96
16039859--16039905	16	2.9	16	72	15	51	68	2	0	29	1.02
16039829--16039893	28	2.4	27	73	12	62	61	3	1	33	1.21
16041494--16041539	25	1.9	25	86	8	69	34	4	6	54	1.46
16047939--16049390	718	2.0	719	84	3	1906	38	13	26	22	1.91
16060492--16060699	28	7.7	27	70	16	130	16	30	19	33	1.94
16060493--16060698	80	2.6	80	85	4	265	16	30	18	33	1.94
16060603--16060751	52	2.9	52	85	6	187	17	29	16	36	1.91
16066975--16067321	52	6.7	52	87	2	475	28	14	23	33	1.94
16070388--16070447	17	3.4	18	75	11	54	23	20	8	48	1.76
16071005--16071043	5	7.6	5	86	13	53	82	0	17	0	0.68
16071005--16071036	17	1.9	16	93	6	55	81	0	18	0	0.70
16073484--16073654	23	7.4	23	84	3	227	32	18	23	25	1.97
16073484--16073650	47	3.6	46	89	3	246	32	18	23	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16076695--16076954	21	13.8	20	63	28	67	36	30	16	16	1.91
16076670--16076858	37	5.2	37	86	5	278	35	29	16	18	1.93
16076843--16076915	37	2.0	37	94	0	128	36	28	19	15	1.92
16076670--16076852	74	2.5	74	99	0	359	36	29	16	17	1.92
16076790--16076907	53	2.2	53	90	0	182	36	29	17	16	1.92
16076845--16076927	37	2.2	37	89	0	121	39	31	15	13	1.86
16076753--16076927	90	1.9	90	86	2	244	37	30	17	14	1.90
16078621--16078674	21	2.6	21	82	5	65	33	25	12	27	1.93
16080437--16080483	22	2.1	23	84	11	62	38	8	2	51	1.45
16098733--16098766	2	17.0	2	100	0	68	50	0	0	50	1.00
16112868--16113051	91	2.0	91	100	0	368	27	17	23	31	1.97
16117628--16117662	18	1.9	18	100	0	70	34	11	22	31	1.90
16127584--16127621	11	3.2	12	81	11	51	28	13	15	42	1.85
16127581--16127638	23	2.5	25	75	16	61	29	13	17	39	1.88
16129269--16129309	18	2.3	18	95	4	75	43	0	0	56	0.99
16129277--16129321	17	2.6	17	85	3	54	46	0	2	51	1.13
16130955--16131614	162	4.1	162	89	1	966	26	17	13	43	1.85
16131688--16131906	29	7.5	28	69	25	134	33	30	2	34	1.70
16131685--16131897	30	7.2	30	66	23	103	34	30	2	32	1.71
16131680--16131913	59	4.0	59	92	0	378	32	31	2	33	1.70
16131962--16132020	28	2.1	28	90	3	93	32	30	10	27	1.89
16143879--16144493	76	8.1	76	95	0	1061	34	15	17	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16144762--16144843	17	4.5	17	75	15	74	48	0	1	50	1.08
16144814--16144847	12	2.8	12	86	13	52	58	0	0	41	0.98
16145874--16145908	16	2.1	16	94	5	61	17	22	17	42	1.88
16146465--16147124	162	4.1	162	91	1	1022	26	17	12	44	1.84
16146465--16147124	323	2.0	323	90	2	1022	26	17	12	44	1.84
16147198--16147307	29	3.8	29	73	17	102	32	31	3	31	1.75
16147190--16147317	59	2.2	59	92	0	211	32	32	3	32	1.76
16147281--16147356	39	2.0	38	81	2	89	28	27	6	36	1.82
16148764--16148833	28	2.5	29	73	15	76	37	12	8	41	1.74
16149557--16149596	19	2.0	21	85	9	57	42	7	2	47	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132